BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004115
         (1476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    82   3e-28
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    99   4e-18
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    92   3e-16
emb|CAN69820.1| hypothetical protein VITISV_025709 [Vitis vinifera]    87   5e-16
emb|CAN63771.1| hypothetical protein VITISV_010879 [Vitis vinifera]    86   1e-15

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 82.4 bits (202), Expect(2) = 3e-28
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 7/201 (3%)
 Frame = +3

Query: 762  WKQRNKWLFEGKKITLSQCKCQMRSHIQN-SFWMTTGYMNRGAHDSQILKKWGLPDKLGR 938
            W + N   F+G +  +S     + + +   SF +          D ++ + + +P K  R
Sbjct: 177  WLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNR 236

Query: 939  APIFKDCKWYPPDGDVIKMNVDGASQGNPGPSGYGVVFRDSRCHFVAVVCGHIDFATNYI 1118
                ++  W PP G  +K+N DG+  G+P     GV+FR S+  F      +I +AT   
Sbjct: 237  VNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALE 296

Query: 1119 VECLAILEGVEYAVQRNWKKLWVESDSEAAVHAFG-SSQLPWGMKQRWDKCKEKLEYCK- 1292
             E  A +  +E A + +   +W+E+DS   + AF  ++ +PW M  RW  C   L +C+ 
Sbjct: 297  AEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNC---LLFCRS 353

Query: 1293 ----ITPTWRECNFSADKVAK 1343
                 T   RE N  AD +AK
Sbjct: 354  IRSLCTHVNREGNLVADALAK 374



 Score = 70.9 bits (172), Expect(2) = 3e-28
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 5/173 (2%)
 Frame = +1

Query: 220 KVSHIIINGEWAIP--FNLWQLMLYAGYNMNQLPTIVGEDYGIWKPDMKGIFSVKSAFET 393
           KV++ ++NGEW +   F      L    +   LP     D  IW   + G  S K AF  
Sbjct: 2   KVANYLVNGEWILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSF 61

Query: 394 IRRKNATIWWSKKVWCKWIHPKIAGTGWKLVRNCAATDEGLQKRGFSIASRCYRGC-EVS 570
           +     T+ W+K +W  +  P  A   W+ + N   TD+ L+KRG  I S C   C + +
Sbjct: 62  LPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQA 121

Query: 571 DTLQHILWECKDSKLLWEWTASQFGFNTSFNNMPDALRVNRG--HSPLIKQLW 723
           +T  HI  +C  +  LW+W       +  F+++ +  R+ +   +S ++  +W
Sbjct: 122 ETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSILNISRMVQHVMNSAIVHIMW 174


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
            gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
            protein ccsA [Medicago truncatula]
          Length = 666

 Score = 98.6 bits (244), Expect = 4e-18
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 3/217 (1%)
 Frame = +3

Query: 762  WKQRNKWLFEGKKITLSQCKCQMRSHIQNSFWMTTGYMNRGAHDSQILKKWGLPDKLGRA 941
            W +RN+  F  K   ++     + + ++ SF +     N    D ++ K + +P K+ R 
Sbjct: 149  WIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQDYKVAKLFNIPFKVKRV 208

Query: 942  PIFKDCKWYPPDGDVIKMNVDGASQGNPGPSGYGVVFRDSRCHFVAVVCGHIDFATNYIV 1121
                D  W PP GD++K+N DG+S G       G+V RDS  HF+  +  +I  AT    
Sbjct: 209  TPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEA 268

Query: 1122 ECLAILEGVEYAVQRNWKKLWVESDSEAAVHAFGSS-QLPWGMKQRWDKCKEKLE--YCK 1292
            E  A +  +E A +     + +E+DS   V+AF     +PW M+ RW  C +  +   C 
Sbjct: 269  EFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCS 328

Query: 1293 ITPTWRECNFSADKVAKYAADLQTNEQLVFDVKPPWI 1403
                 RE N  AD +AK+   L      ++   PP+I
Sbjct: 329  CVHILREGNMVADALAKHGQGLSLYYTQLWTSPPPFI 365



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 28/82 (34%), Positives = 44/82 (53%)
 Frame = +1

Query: 382 AFETIRRKNATIWWSKKVWCKWIHPKIAGTGWKLVRNCAATDEGLQKRGFSIASRCYRGC 561
           A++ I      + W K +W  +I P  +   W+L+ N   TDE L+KRG  I S C    
Sbjct: 23  AYKFINETGNHVLWDKFLWNSYIPPSRSFITWRLLHNKLPTDENLRKRGCLIVSICCFCM 82

Query: 562 EVSDTLQHILWECKDSKLLWEW 627
           + +++ QHI +EC  +  LW+W
Sbjct: 83  KSAESSQHIFFECHVTSRLWDW 104


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 92.4 bits (228), Expect = 3e-16
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 3/193 (1%)
 Frame = +3

Query: 834  SHIQNSFWMTTGYMNRGAHDSQILKKWGLPDKLGRAPIFKDCKWYPPDGDVIKMNVDGAS 1013
            + ++ SF +     N    D ++ K + +P K+ R     D  W PP GD++K+N DG+S
Sbjct: 10   AEVKMSFSLCMIKGNSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSS 69

Query: 1014 QGNPGPSGYGVVFRDSRCHFVAVVCGHIDFATNYIVECLAILEGVEYAVQRNWKKLWVES 1193
             G       G+V RDS  HF+  +  +I  AT    E  A +  +E A +     + +E+
Sbjct: 70   VGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLET 129

Query: 1194 DSEAAVHAFGSS-QLPWGMKQRWDKCKEKLE--YCKITPTWRECNFSADKVAKYAADLQT 1364
            DS   V+AF     +PW M+ RW  C +  +   C      RE N  AD +AK+   L  
Sbjct: 130  DSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSL 189

Query: 1365 NEQLVFDVKPPWI 1403
                ++   PP+I
Sbjct: 190  YYTQLWTSPPPFI 202


>emb|CAN69820.1| hypothetical protein VITISV_025709 [Vitis vinifera]
          Length = 779

 Score = 87.0 bits (214), Expect(2) = 5e-16
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 11/191 (5%)
 Frame = +1

Query: 112  LGTGDRVDLWRDVWIGEQSIXXXXXXXXXXXXGCRSKVSHI---IING-EW----AIPFN 267
            LG G RV  W+D W G++ +               + VS +   + +G +W    A  FN
Sbjct: 435  LGNGQRVKFWKDKWCGDEPLCESFPSLFSISMSKNAWVSDVWNPVGDGIDWTPLFARAFN 494

Query: 268  LWQLMLYAGYNMNQLPTIVG---EDYGIWKPDMKGIFSVKSAFETIRRKNATIWWSKKVW 438
             W+++L            V    ED  IW     G+FSV+S +  +      ++ S+++W
Sbjct: 495  DWEIILLEXLLQKIQXFRVQREEEDRVIWTASKDGVFSVRSLYSMLEPGGLPLFPSERIW 554

Query: 439  CKWIHPKIAGTGWKLVRNCAATDEGLQKRGFSIASRCYRGCEVSDTLQHILWECKDSKLL 618
               + PK+A   W+       T E LQ+RGFS+A+RC+      +T+ H+L  C  +++L
Sbjct: 555  RARVPPKVAFFAWEASWGKVLTQEQLQRRGFSLANRCFLCLSEEETVDHLLLHCIKTRVL 614

Query: 619  WEWTASQFGFN 651
            W    S FG +
Sbjct: 615  WNLLFSLFGIS 625



 Score = 25.0 bits (53), Expect(2) = 5e-16
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 723 AWEAAVLVGMVINWKQRNKWLFEGKKITLSQCK 821
           AW+ A L      WK+RN+  F  + ++L + K
Sbjct: 651 AWQMAPLCIFWTVWKERNRLAFGDEDLSLQRLK 683


>emb|CAN63771.1| hypothetical protein VITISV_010879 [Vitis vinifera]
          Length = 957

 Score = 85.5 bits (210), Expect(2) = 1e-15
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 11/195 (5%)
 Frame = +1

Query: 94  SNSRWLLGTGDRVDLWRDVWIGEQSIXXXXXXXXXXXXGCRSKVSHII----INGEWAIP 261
           S+SR+ +G G RV  W+D+W   QS+               S V+       + G WA  
Sbjct: 124 SHSRFFVGDGTRVKFWKDLWCENQSLEEAFPTLFNLSVNKDSWVAEAWEEDGVGGSWAPR 183

Query: 262 FNL----WQLMLYAGYNMNQLPTIVGE---DYGIWKPDMKGIFSVKSAFETIRRKNATIW 420
           FN     W++          LP  +     D   WK +  G FSVKS + ++ R   T +
Sbjct: 184 FNRHLNDWEVGKVGSLLGKLLPMTIRRGVNDSLRWKENKNGTFSVKSFYSSLSRGIKTPF 243

Query: 421 WSKKVWCKWIHPKIAGTGWKLVRNCAATDEGLQKRGFSIASRCYRGCEVSDTLQHILWEC 600
            ++ +W  W+  + +  GW+   +   T + L++ G+SI +RC+   +  +T+ H+L  C
Sbjct: 244 LARTIWTPWVPIRASFFGWEAAWSRLLTTDRLKRFGWSIPNRCFLCKKEEETIDHLLLFC 303

Query: 601 KDSKLLWEWTASQFG 645
           + +++LW    S FG
Sbjct: 304 EKTRMLWLLILSLFG 318



 Score = 25.0 bits (53), Expect(2) = 1e-15
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 723 AWEAAVLVGMVINWKQRNKWLFE 791
           AW AA L  M   WK+RN+  F+
Sbjct: 346 AWRAAPLCLMWTIWKERNRRAFD 368