BLASTX nr result
ID: Coptis21_contig00004090
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00004090
(1819 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI26110.3| unnamed protein product [Vitis vinifera] 220 4e-74
ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding prote... 220 4e-74
emb|CBI34243.3| unnamed protein product [Vitis vinifera] 195 7e-66
ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding prote... 191 1e-64
ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus c... 185 1e-63
>emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 220 bits (561), Expect(2) = 4e-74
Identities = 161/443 (36%), Positives = 214/443 (48%), Gaps = 9/443 (2%)
Frame = +1
Query: 184 PVFHCTVEIARWSFTGEPXXXXXXXXXXXXXXXWSTLKELPHLQXXXXXLPKLEVERKDE 363
PVF CTV+IA+ SFTGEP WS LK L P LE DE
Sbjct: 117 PVFFCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSAP-LESGGNDE 175
Query: 364 QEQVVVARALAKLCPPDMKKSTIQNDRHSVRQRSAPVHRDMKPARSGMHLYPVPYPSWPY 543
EQV VAR LA L PP+ KS ++ + Q S P RD+ P + + LY + W
Sbjct: 176 LEQVTVARYLASLQPPEANKSAQRDGL--LGQGSTPCRRDLMPNDNAISLYSMHCRDWS- 232
Query: 544 LHCTPEMTM-YQLWQPEQVSQQQNRIITLPVAQSP-PVPQILPFVHSIFQPDHGQYIIAR 717
H P + + +Q W E+ SQQQN ++ LP A + P PQ+ P + SIFQPDHG + R
Sbjct: 233 -HSAPLIQLAHQSWPKERASQQQNHLLALPSAPTTLPRPQMSPIIRSIFQPDHGPCFLPR 291
Query: 718 DQKSITGGIPMA-GPGPSNLFSNCTMPIQVRSRSQVTIQEIHEERPKGEDDWLRGDTNSN 894
+Q+ P++ G GP FSN +MP+ V + SQVTIQEI EE+PK E +WL D NS
Sbjct: 292 EQEPA----PLSPGIGPFLYFSNGSMPVPVSNLSQVTIQEI-EEKPKVEQEWLNVDANSG 346
Query: 895 CHKVEVQSNSSVLPQFEVQNLSASNKSSPEPL---LQNEPHEDQKSGKLNIGHSELEGTQ 1065
C K+ SN S L E+ S S EP+ LQ + E+ +G ++++
Sbjct: 347 CWKINFPSNLSGLSLVEIPKCPISPNSHSEPIQEALQGKEEENSAGNSAQLGTNQIQRLA 406
Query: 1066 SELSKWPSQSPMDTASRSEATSPGRTDIFLGSSGGFDYSRSKLPQHPSRPSSLGVAKYCS 1245
W S DT RS A + +++L + DY +S + + ++ +
Sbjct: 407 -----WTSPRFADT--RSSAGASDEANLWLQNQQFLDYLQSNIRSQNAPMATYPGSSRVY 459
Query: 1246 QSSNAAXXXXXXXXXXXXXXXXXESLNPWVPASATFRTAAPACSARPRL---MKIGATAS 1416
+AA S + +V A R AAP S RP L G
Sbjct: 460 TRPSAAPVTIRSSDASSIRKPRPMSSSLFVSAPPPTRYAAPTWSTRPTLEGAKYTGVRPC 519
Query: 1417 HHFMAPAVQIRSVVPVCSAPPAK 1485
FMAPAV IRSVVPVCSAPPAK
Sbjct: 520 SRFMAPAVNIRSVVPVCSAPPAK 542
Score = 86.3 bits (212), Expect(2) = 4e-74
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +2
Query: 2 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFHCTV 124
DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH+PVF CTV
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFFCTV 123
>ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 220 bits (561), Expect(2) = 4e-74
Identities = 161/443 (36%), Positives = 214/443 (48%), Gaps = 9/443 (2%)
Frame = +1
Query: 184 PVFHCTVEIARWSFTGEPXXXXXXXXXXXXXXXWSTLKELPHLQXXXXXLPKLEVERKDE 363
PVF CTV+IA+ SFTGEP WS LK L P LE DE
Sbjct: 117 PVFFCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSAP-LESGGNDE 175
Query: 364 QEQVVVARALAKLCPPDMKKSTIQNDRHSVRQRSAPVHRDMKPARSGMHLYPVPYPSWPY 543
EQV VAR LA L PP+ KS ++ + Q S P RD+ P + + LY + W
Sbjct: 176 LEQVTVARYLASLQPPEANKSAQRDGL--LGQGSTPCRRDLMPNDNAISLYSMHCRDWS- 232
Query: 544 LHCTPEMTM-YQLWQPEQVSQQQNRIITLPVAQSP-PVPQILPFVHSIFQPDHGQYIIAR 717
H P + + +Q W E+ SQQQN ++ LP A + P PQ+ P + SIFQPDHG + R
Sbjct: 233 -HSAPLIQLAHQSWPKERASQQQNHLLALPSAPTTLPRPQMSPIIRSIFQPDHGPCFLPR 291
Query: 718 DQKSITGGIPMA-GPGPSNLFSNCTMPIQVRSRSQVTIQEIHEERPKGEDDWLRGDTNSN 894
+Q+ P++ G GP FSN +MP+ V + SQVTIQEI EE+PK E +WL D NS
Sbjct: 292 EQEPA----PLSPGIGPFLYFSNGSMPVPVSNLSQVTIQEI-EEKPKVEQEWLNVDANSG 346
Query: 895 CHKVEVQSNSSVLPQFEVQNLSASNKSSPEPL---LQNEPHEDQKSGKLNIGHSELEGTQ 1065
C K+ SN S L E+ S S EP+ LQ + E+ +G ++++
Sbjct: 347 CWKINFPSNLSGLSLVEIPKCPISPNSHSEPIQEALQGKEEENSAGNSAQLGTNQIQRLA 406
Query: 1066 SELSKWPSQSPMDTASRSEATSPGRTDIFLGSSGGFDYSRSKLPQHPSRPSSLGVAKYCS 1245
W S DT RS A + +++L + DY +S + + ++ +
Sbjct: 407 -----WTSPRFADT--RSSAGASDEANLWLQNQQFLDYLQSNIRSQNAPMATYPGSSRVY 459
Query: 1246 QSSNAAXXXXXXXXXXXXXXXXXESLNPWVPASATFRTAAPACSARPRL---MKIGATAS 1416
+AA S + +V A R AAP S RP L G
Sbjct: 460 TRPSAAPVTIRSSDASSIRKPRPMSSSLFVSAPPPTRYAAPTWSTRPTLEGAKYTGVRPC 519
Query: 1417 HHFMAPAVQIRSVVPVCSAPPAK 1485
FMAPAV IRSVVPVCSAPPAK
Sbjct: 520 SRFMAPAVNIRSVVPVCSAPPAK 542
Score = 86.3 bits (212), Expect(2) = 4e-74
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +2
Query: 2 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFHCTV 124
DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH+PVF CTV
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFFCTV 123
>emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 195 bits (495), Expect(2) = 7e-66
Identities = 163/455 (35%), Positives = 210/455 (46%), Gaps = 9/455 (1%)
Frame = +1
Query: 184 PVFHCTVEIARWSFTGEPXXXXXXXXXXXXXXXWSTLKELPHLQXXXXXLPKLEVERKDE 363
PVF CTVEIA SFTGE WS L++L Q P +E E +E
Sbjct: 117 PVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKLS--QRGSPSSPSVESECNEE 174
Query: 364 QEQVVVARALAKLCPPDMKKSTIQNDRHSVRQRSAPVHRD---MKPARSGMHLYPVPYPS 534
QEQV++AR LA L P K + QNDR +QRS + RD P M PS
Sbjct: 175 QEQVIIARVLASLRPS--KSNNKQNDRQHGQQRSGSICRDSTPQTPISCSMQYQSTVDPS 232
Query: 535 WPYLHCTPEMTMYQLWQPEQVSQQQNRIITLPVAQSP-PVPQILPFVHSIFQPDHGQYII 711
+ PEM MYQ+WQ EQ++Q QNR++ LPV +P P P PF+ S+F+PDH Y
Sbjct: 233 F-----FPEMAMYQMWQQEQLAQLQNRLLALPVPLAPQPSPHFFPFMQSMFRPDHCLYFP 287
Query: 712 ARDQKSITGG--IPMAGPGPSNLFSNCTMPIQVRSRSQVTIQEIHEERPKGEDDWLRGDT 885
Q+ IT G +A G S SN +P +R RS VTIQEI E + +
Sbjct: 288 TEVQQPITMGPRFSIAASGSSFYLSNHLVPEPMRGRSMVTIQEIEE----------KTEE 337
Query: 886 NSNCHKVEVQSNSSVLPQFEVQNLSASNKSSPEPLLQNEPHEDQKSGKLNIGHSELEGTQ 1065
S EV SV P N A N+ EP+ ++ ++ G +LE Q
Sbjct: 338 RSEFSPSEV----SVSPALGDNNTEAINQ---EPIQEDNKQNTEELGGKIATSVQLERNQ 390
Query: 1066 SELSKWPSQSPMDTASRSEATSPGRTDIFLGSSGGFDYSRSK-LPQHPSRPSSLGVAKYC 1242
W T+ RS + G + L GFD S+S P HP SS ++
Sbjct: 391 PGQFGW-------TSRRSVDSRLGPIEFQLQRPHGFDSSQSNPRPYHPPGLSSYRSSR-- 441
Query: 1243 SQSSNAAXXXXXXXXXXXXXXXXXESLNPWVPASATFRTAAPACSARPRLMKIG-ATASH 1419
S+ AA ++L +PA RT P S RPR ++
Sbjct: 442 PPSTVAAPVMTRTGDPVSSVGLRPQNLANQMPAPPRMRTGIPPYSFRPRPERMDFGRGPP 501
Query: 1420 HFMAPAVQIRSVVPVCSAPPA-KLPESSQKVLHSI 1521
MAPAVQIR+VVPVCSAPPA K+P S K + SI
Sbjct: 502 RAMAPAVQIRTVVPVCSAPPARKIPRPSSKEMTSI 536
Score = 84.3 bits (207), Expect(2) = 7e-66
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +2
Query: 2 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFHCTV 124
DETGVYKNLLQETAHRAGL LPVYTT+RSGPGHVPVF CTV
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTV 123
>ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 191 bits (484), Expect(2) = 1e-64
Identities = 162/452 (35%), Positives = 207/452 (45%), Gaps = 9/452 (1%)
Frame = +1
Query: 184 PVFHCTVEIARWSFTGEPXXXXXXXXXXXXXXXWSTLKELPHLQXXXXXLPKLEVERKDE 363
PVF CTVEIA SFTGE WS L+ KLE E +E
Sbjct: 117 PVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALR-------------KLESECNEE 163
Query: 364 QEQVVVARALAKLCPPDMKKSTIQNDRHSVRQRSAPVHRD---MKPARSGMHLYPVPYPS 534
QEQV++AR LA L P K + QNDR +QRS + RD P M PS
Sbjct: 164 QEQVIIARVLASLRPS--KSNNKQNDRQHGQQRSGSICRDSTPQTPISCSMQYQSTVDPS 221
Query: 535 WPYLHCTPEMTMYQLWQPEQVSQQQNRIITLPVAQSP-PVPQILPFVHSIFQPDHGQYII 711
+ PEM MYQ+WQ EQ++Q QNR++ LPV +P P P PF+ S+F+PDH Y
Sbjct: 222 F-----FPEMAMYQMWQQEQLAQLQNRLLALPVPLAPQPSPHFFPFMQSMFRPDHCLYFP 276
Query: 712 ARDQKSITGG--IPMAGPGPSNLFSNCTMPIQVRSRSQVTIQEIHEERPKGEDDWLRGDT 885
Q+ IT G +A G S SN +P +R RS VTIQEI E + +
Sbjct: 277 TEVQQPITMGPRFSIAASGSSFYLSNHLVPEPMRGRSMVTIQEIEE----------KTEE 326
Query: 886 NSNCHKVEVQSNSSVLPQFEVQNLSASNKSSPEPLLQNEPHEDQKSGKLNIGHSELEGTQ 1065
S EV SV P N A N+ EP+ ++ ++ G +LE Q
Sbjct: 327 RSEFSPSEV----SVSPALGDNNTEAINQ---EPIQEDNKQNTEELGGKIATSVQLERNQ 379
Query: 1066 SELSKWPSQSPMDTASRSEATSPGRTDIFLGSSGGFDYSRSK-LPQHPSRPSSLGVAKYC 1242
W T+ RS + G + L GFD S+S P HP SS ++
Sbjct: 380 PGQFGW-------TSRRSVDSRLGPIEFQLQRPHGFDSSQSNPRPYHPPGLSSYRSSR-- 430
Query: 1243 SQSSNAAXXXXXXXXXXXXXXXXXESLNPWVPASATFRTAAPACSARPRLMKIG-ATASH 1419
S+ AA ++L +PA RT P S RPR ++
Sbjct: 431 PPSTVAAPVMTRTGDPVSSVGLRPQNLANQMPAPPRMRTGIPPYSFRPRPERMDFGRGPP 490
Query: 1420 HFMAPAVQIRSVVPVCSAPPA-KLPESSQKVL 1512
MAPAVQIR+VVPVCSAPPA K+P SSQ+ L
Sbjct: 491 RAMAPAVQIRTVVPVCSAPPARKIPSSSQEGL 522
Score = 84.3 bits (207), Expect(2) = 1e-64
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +2
Query: 2 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFHCTV 124
DETGVYKNLLQETAHRAGL LPVYTT+RSGPGHVPVF CTV
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTV 123
>ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein
RCOM_1429110 [Ricinus communis]
Length = 568
Score = 185 bits (470), Expect(2) = 1e-63
Identities = 155/484 (32%), Positives = 224/484 (46%), Gaps = 16/484 (3%)
Frame = +1
Query: 184 PVFHCTVEIARWSFTGEPXXXXXXXXXXXXXXXWSTLKEL-PHLQXXXXXLPKLEVERK- 357
PVF CTVE+A SFTGEP WS LK L H L VE +
Sbjct: 117 PVFSCTVELAGMSFTGEPARTKKQAQKNAAMAAWSALKRLVQHGSSSSSSLSSSLVENRK 176
Query: 358 --DEQEQVVVARALAKLCPPDMKKSTIQNDRHSVRQRSAPVHRDMKPARSGMHLYPVPYP 531
+EQEQVV+AR LA + P ++K + QND + +R PV +D+ P LYP+
Sbjct: 177 GSEEQEQVVIARFLASVQPSELKINK-QNDCQTGHERFIPVCKDLTPPTPS--LYPMQSQ 233
Query: 532 SWPYLHCTPEMTMYQLWQPEQVSQQQNRIITLPVAQSPP-VPQILPFVHSIFQPDHGQYI 708
+W Y +PE+ +YQ+WQ EQ+ Q NR++TL V +PP P +LP++ S+ P+ +
Sbjct: 234 NWAYPSFSPEIAIYQMWQQEQLLQLHNRLLTLQVPPAPPPAPPMLPYMQSVLPPNSHLFF 293
Query: 709 IARDQKSITGG--IPMAGPGPSNLFSNCTMPIQVRSRSQVTIQEIHEERPKGEDDWLRGD 882
R Q+++ G I +A GP S+ VR +S VTIQEI+EE+P+ D
Sbjct: 294 PLRKQETVPVGPRITIASSGPLLCLSDNVDSDSVRGKSAVTIQEINEEKPEDLSDC---- 349
Query: 883 TNSNCHKVEVQSNSSVLPQFEVQNLSASNKSSPEPLLQNEPHEDQKSGKLNIGHSELEGT 1062
S S + + NLSA + E H+D K+ N S++E
Sbjct: 350 -----------SPSIISDPPVLGNLSAEARFK-------ESHDDDKN---NAVESKVENV 388
Query: 1063 QSELSKWPSQSPMDTASRSEAT-----SPGRTDIFLGSSGGFDYSRSKLPQHPSRPSSLG 1227
+ + S +T S SPG +F+ +S + P ++
Sbjct: 389 RLAENPSGQSSHRNTDSGYSQVDFRVQSPG---VFVSCHASSQFSPRQSSTSCRPPPTVM 445
Query: 1228 VAKYCSQSSNAAXXXXXXXXXXXXXXXXXESLNPWVPASATFRTAAPACSARPRLMKIGA 1407
+ + AA L +P RT AP+ SARP+ ++
Sbjct: 446 IRNVGPRPLPAAPPVRIRTMGPVSSVPRPHDLAAQIPGPPRMRTGAPSYSARPQPQRMDF 505
Query: 1408 TASH-HFMAPAVQIRSVVPVCSAPP--AKLPESSQK-VLHSIAERTKEPKDVAIANSELS 1575
H FMAPAV+IRSVVPVCSAPP K+P + Q+ L + + P+D++ SE S
Sbjct: 506 VGVHPRFMAPAVRIRSVVPVCSAPPPARKMPTAGQEGALLNKQKNGSVPEDIS-TTSEFS 564
Query: 1576 NLRI 1587
LRI
Sbjct: 565 KLRI 568
Score = 86.7 bits (213), Expect(2) = 1e-63
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = +2
Query: 2 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFHCTV 124
DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVF CTV
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFSCTV 123