BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00004028
         (1232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283378.1| PREDICTED: pentatricopeptide repeat-containi...   457   e-126
ref|XP_003546072.1| PREDICTED: pentatricopeptide repeat-containi...   448   e-123
ref|XP_002301807.1| predicted protein [Populus trichocarpa] gi|2...   444   e-122
ref|XP_004144398.1| PREDICTED: pentatricopeptide repeat-containi...   439   e-121
ref|XP_002534359.1| pentatricopeptide repeat-containing protein,...   428   e-117

>ref|XP_002283378.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  457 bits (1175), Expect = e-126
 Identities = 219/322 (68%), Positives = 261/322 (81%)
 Frame = +1

Query: 151  LEKQFETWVDKLKPGFTPDDVDQALKSQHDTDLALDIFRWTSQQRNYKHNHITYHTIIHM 330
            L+ QFE+W+  LKPGF+P DVD+AL++Q D DLALDIFRWT QQR Y+HNH+TY T+I +
Sbjct: 72   LQMQFESWIHMLKPGFSPSDVDEALRAQSDPDLALDIFRWTGQQRGYRHNHVTYLTMIKI 131

Query: 331  SIHSKRFGHAEALIEEVIAGACCGSEKLYNLIIRHCCRQKKLFNRAFDVYKKMIKSRDCK 510
            ++  KRF HAE LIEEVIAGAC  S  LYN IIR CC +K LFNRAFDVYKKM+ S DCK
Sbjct: 132  AVSGKRFRHAETLIEEVIAGACSVSVPLYNSIIRFCCGRKFLFNRAFDVYKKMLNSEDCK 191

Query: 511  PSLETYTMLLNAVLSKFSKVPVCYVYMHGVRSLHKQMKASGVIPDTFVLNLIIKAYSKCL 690
            PSLETYT+LLNA+L KF+K+ VCYVY+H VRSL KQMK SGVIPDTF LN+IIKAYSKCL
Sbjct: 192  PSLETYTLLLNALLRKFNKLTVCYVYLHAVRSLTKQMKVSGVIPDTFALNMIIKAYSKCL 251

Query: 691  DLDGAIRVFREMGLYGCEPNEYSYSYIAKGLCEKGKVDDGLRYYKEMMEKGFVGTSSTYM 870
            ++D AIRVFREMGLYGCEPN Y+Y YIA GLCEKG+V  GL +Y+EM  K  V +SSTY+
Sbjct: 252  EVDEAIRVFREMGLYGCEPNAYTYGYIANGLCEKGRVSQGLGFYREMRSKDLVPSSSTYV 311

Query: 871  ILVCSLSMEWRFEDAIKIMFDMLDSSKIPDLLTYKTVFEELCRAGRGDDAFELLEELRRR 1050
            IL+CSLSME RFE+A KI+FDML +S  PDLLTYKT+ E L R G+ +DAFELLE+LR++
Sbjct: 312  ILICSLSMERRFEEATKILFDMLGNSMAPDLLTYKTLLEGLSREGKCNDAFELLEDLRKK 371

Query: 1051 TGAMGDTTYNTLLDRLHFMKGE 1116
               MG+ TY TL+  LHF+  E
Sbjct: 372  DAWMGEKTYKTLVKGLHFLSQE 393


>ref|XP_003546072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Glycine max]
          Length = 372

 Score =  448 bits (1153), Expect = e-123
 Identities = 219/317 (69%), Positives = 262/317 (82%), Gaps = 1/317 (0%)
 Frame = +1

Query: 154  EKQFETWVDKLKPGFTPDDVDQALKSQHDTDLALDIFRWTSQQRNYKHNHITYHTIIHMS 333
            EKQFETWV  LKPGFTP DV QAL++Q D DLALDIFRWT+QQRNYKH H TY  II   
Sbjct: 51   EKQFETWVQALKPGFTPSDVAQALQAQSDPDLALDIFRWTAQQRNYKHTHHTYLIIIKHL 110

Query: 334  IHSKRFGHAEALIEEVIAGACC-GSEKLYNLIIRHCCRQKKLFNRAFDVYKKMIKSRDCK 510
            I  +R+ HAE LIEEVIAGAC   S  LYN IIR CC +K LFNRAFDVYKKM+ SRDCK
Sbjct: 111  IAGRRYHHAETLIEEVIAGACDDASIPLYNSIIRFCCGRKFLFNRAFDVYKKMLNSRDCK 170

Query: 511  PSLETYTMLLNAVLSKFSKVPVCYVYMHGVRSLHKQMKASGVIPDTFVLNLIIKAYSKCL 690
            P+LETY++L N++L +F+K+ VCYVY+H VRSL KQMKASGVIPD+FVLN+IIKAY+KCL
Sbjct: 171  PNLETYSLLFNSLLRRFNKLNVCYVYLHAVRSLTKQMKASGVIPDSFVLNMIIKAYAKCL 230

Query: 691  DLDGAIRVFREMGLYGCEPNEYSYSYIAKGLCEKGKVDDGLRYYKEMMEKGFVGTSSTYM 870
            ++D AIRVFREMGLYGCEPN YSY YIAKGLCEKG+VD GLR+Y+EM  KG V ++ST++
Sbjct: 231  EVDEAIRVFREMGLYGCEPNAYSYGYIAKGLCEKGRVDQGLRFYREMRGKGLVPSTSTFV 290

Query: 871  ILVCSLSMEWRFEDAIKIMFDMLDSSKIPDLLTYKTVFEELCRAGRGDDAFELLEELRRR 1050
            I+VCSL+ME RFEDAI+++FDML  S+ PD LTYKTV E LCR GR D+AFELL+E ++R
Sbjct: 291  IIVCSLAMERRFEDAIEVLFDMLGQSRSPDHLTYKTVLEGLCREGRVDEAFELLDECKKR 350

Query: 1051 TGAMGDTTYNTLLDRLH 1101
              +MG+ TY +LL+ L+
Sbjct: 351  DVSMGEKTYKSLLNDLY 367


>ref|XP_002301807.1| predicted protein [Populus trichocarpa] gi|222843533|gb|EEE81080.1|
            predicted protein [Populus trichocarpa]
          Length = 325

 Score =  444 bits (1141), Expect = e-122
 Identities = 213/319 (66%), Positives = 255/319 (79%)
 Frame = +1

Query: 151  LEKQFETWVDKLKPGFTPDDVDQALKSQHDTDLALDIFRWTSQQRNYKHNHITYHTIIHM 330
            LE QFETW   LKPGFTP DVD A+++Q D DLALDIFRWT+QQRNYKHNHITY T+I +
Sbjct: 5    LETQFETWTQNLKPGFTPTDVDTAIRAQSDPDLALDIFRWTAQQRNYKHNHITYLTVIKI 64

Query: 331  SIHSKRFGHAEALIEEVIAGACCGSEKLYNLIIRHCCRQKKLFNRAFDVYKKMIKSRDCK 510
             I  +R+  AE LIEEVIAGAC  S  LYN +IR CC +K LFNRAFD+YKKM+KS DCK
Sbjct: 65   LISGRRYRQAETLIEEVIAGACEISVPLYNSMIRFCCGRKLLFNRAFDIYKKMLKSEDCK 124

Query: 511  PSLETYTMLLNAVLSKFSKVPVCYVYMHGVRSLHKQMKASGVIPDTFVLNLIIKAYSKCL 690
            P+L+TYT+L N++L +F+K+ VCYVY+H V+SL KQMKASGVIPDTFVLN+IIKAY+KCL
Sbjct: 125  PTLDTYTLLFNSLLRRFNKLNVCYVYLHAVKSLTKQMKASGVIPDTFVLNMIIKAYAKCL 184

Query: 691  DLDGAIRVFREMGLYGCEPNEYSYSYIAKGLCEKGKVDDGLRYYKEMMEKGFVGTSSTYM 870
            ++D A+RVFREMGLYGCE N YSYSY+ KGLC KG+   GL +YKEM  KG V + STYM
Sbjct: 185  EVDEAVRVFREMGLYGCEANAYSYSYLVKGLCGKGRSGQGLGFYKEMKGKGLVPSGSTYM 244

Query: 871  ILVCSLSMEWRFEDAIKIMFDMLDSSKIPDLLTYKTVFEELCRAGRGDDAFELLEELRRR 1050
            IL+CSL ME RFE+AI ++FDML  S  PDLLTY+TV E LCR G  D AFELLEE R++
Sbjct: 245  ILICSLGMERRFEEAIGVVFDMLGDSMSPDLLTYRTVLEGLCREGMVDKAFELLEEWRKK 304

Query: 1051 TGAMGDTTYNTLLDRLHFM 1107
             G MG+  Y +LL+ LHF+
Sbjct: 305  DGFMGEKNYKSLLNGLHFV 323


>ref|XP_004144398.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Cucumis sativus]
            gi|449516331|ref|XP_004165200.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Cucumis sativus]
          Length = 393

 Score =  439 bits (1129), Expect = e-121
 Identities = 211/317 (66%), Positives = 259/317 (81%)
 Frame = +1

Query: 151  LEKQFETWVDKLKPGFTPDDVDQALKSQHDTDLALDIFRWTSQQRNYKHNHITYHTIIHM 330
            LEKQFE+WV KLKPGF+P DV++AL++Q D DLALD+FRWT+QQR YKHNH+TY TII +
Sbjct: 72   LEKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKI 131

Query: 331  SIHSKRFGHAEALIEEVIAGACCGSEKLYNLIIRHCCRQKKLFNRAFDVYKKMIKSRDCK 510
             I+ +R   AE L+EEVIAGAC  S  LYN +IR CC +K  FNRAFDVYKKM KS DCK
Sbjct: 132  LIYRRRCHLAETLVEEVIAGACEMSVPLYNSVIRFCCARKCRFNRAFDVYKKMWKSDDCK 191

Query: 511  PSLETYTMLLNAVLSKFSKVPVCYVYMHGVRSLHKQMKASGVIPDTFVLNLIIKAYSKCL 690
            P+LETY ML N++L +F+K+ V YVY+H VRSL KQMK+SGVIPDTFVLN+IIKAYSKCL
Sbjct: 192  PTLETYAMLFNSLLRRFNKLSVSYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAYSKCL 251

Query: 691  DLDGAIRVFREMGLYGCEPNEYSYSYIAKGLCEKGKVDDGLRYYKEMMEKGFVGTSSTYM 870
            ++D AIRVFREMGLY C+PN Y+Y YIAKGLCEKG+V+ GL +YKEM  +G + +SSTYM
Sbjct: 252  EVDEAIRVFREMGLYACQPNSYTYGYIAKGLCEKGRVEQGLEFYKEMRVRGLIPSSSTYM 311

Query: 871  ILVCSLSMEWRFEDAIKIMFDMLDSSKIPDLLTYKTVFEELCRAGRGDDAFELLEELRRR 1050
            IL+CSL+ME RFE+AI+I FDML +S  PDLLTY+T+ E LCR GR  +AF+LL+ELR+R
Sbjct: 312  ILICSLAMERRFEEAIEICFDMLCNSMAPDLLTYRTLLEGLCREGRDSEAFDLLDELRKR 371

Query: 1051 TGAMGDTTYNTLLDRLH 1101
               M + T+ TLL+ LH
Sbjct: 372  DKLMNEKTFKTLLNGLH 388


>ref|XP_002534359.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223525434|gb|EEF28024.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 382

 Score =  428 bits (1101), Expect = e-117
 Identities = 204/319 (63%), Positives = 251/319 (78%)
 Frame = +1

Query: 151  LEKQFETWVDKLKPGFTPDDVDQALKSQHDTDLALDIFRWTSQQRNYKHNHITYHTIIHM 330
            LE QFETW   LKPGFTP DV  AL+SQ D DLA DIFRWT+QQRNYKH+H+TY  +I +
Sbjct: 61   LETQFETWTQTLKPGFTPTDVQTALRSQSDPDLAYDIFRWTAQQRNYKHSHLTYFAMIKI 120

Query: 331  SIHSKRFGHAEALIEEVIAGACCGSEKLYNLIIRHCCRQKKLFNRAFDVYKKMIKSRDCK 510
             I  KR+ HAE L+EEVIAGAC  + +LYN +IR CC +K LFNRAFDVYKKM++S DCK
Sbjct: 121  LIDGKRYRHAETLVEEVIAGACEMNVQLYNSMIRFCCGRKLLFNRAFDVYKKMLQSDDCK 180

Query: 511  PSLETYTMLLNAVLSKFSKVPVCYVYMHGVRSLHKQMKASGVIPDTFVLNLIIKAYSKCL 690
            P+LETYT+LLN++L +F+K+ VCYVY+H V+SL KQMKASGVIPDTF LN+IIKA++KC 
Sbjct: 181  PTLETYTLLLNSLLRRFNKLNVCYVYLHAVKSLTKQMKASGVIPDTFALNMIIKAFAKCR 240

Query: 691  DLDGAIRVFREMGLYGCEPNEYSYSYIAKGLCEKGKVDDGLRYYKEMMEKGFVGTSSTYM 870
            ++D AIRVFREMGLYGCEPN YSY YI KGLCEKG+V  GL +YKEM  K  + +  TYM
Sbjct: 241  EVDEAIRVFREMGLYGCEPNGYSYGYIVKGLCEKGRVGQGLGFYKEMKRKELIPSGGTYM 300

Query: 871  ILVCSLSMEWRFEDAIKIMFDMLDSSKIPDLLTYKTVFEELCRAGRGDDAFELLEELRRR 1050
            IL+CSL+++ R  +AI ++FDML +S  PD LTY+TV E LCR G+ D+AFELLEE R+R
Sbjct: 301  ILICSLAVDLRLGEAIDVVFDMLANSMSPDFLTYRTVLEGLCREGKTDEAFELLEEFRKR 360

Query: 1051 TGAMGDTTYNTLLDRLHFM 1107
              +M   TY  LL+ L F+
Sbjct: 361  DMSMSQKTYKILLNALQFV 379