BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003592
         (961 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thalia...   257   3e-66
ref|XP_002877637.1| EMB1080 [Arabidopsis lyrata subsp. lyrata] g...   257   3e-66
ref|XP_002285422.1| PREDICTED: 40S ribosomal protein S11 [Vitis ...   257   3e-66
ref|XP_003609505.1| 40S ribosomal protein S11 [Medicago truncatu...   256   6e-66
gb|AAA32866.1| ribosomal protein S11 (probable start codon at bp...   256   7e-66

>ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thaliana]
           gi|11134432|sp|O65569.2|RS112_ARATH RecName: Full=40S
           ribosomal protein S11-2 gi|5708091|emb|CAA18213.2|
           ribosomal protein S11-like [Arabidopsis thaliana]
           gi|7269981|emb|CAB79798.1| ribosomal protein S11-like
           [Arabidopsis thaliana] gi|15028245|gb|AAK76711.1|
           putative ribosomal protein S11 [Arabidopsis thaliana]
           gi|20258899|gb|AAM14143.1| putative ribosomal protein
           S11 [Arabidopsis thaliana] gi|332660410|gb|AEE85810.1|
           40S ribosomal protein S11-2 [Arabidopsis thaliana]
          Length = 159

 Score =  257 bits (656), Expect = 3e-66
 Identities = 129/160 (80%), Positives = 137/160 (85%)
 Frame = +1

Query: 103 MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 282
           MAEQTEKAFLKQPKVFL               NRF+K+IGL FKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 283 FVGEVSIRGRIVTGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 462
           F G VSIRGRI++G CHSAKM RTIIVRRDYLHFVKKY+RYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 463 GDRVTIGQCRPLSKTVRFNVLKVIPAGTSGSTGKKAFIGV 582
           GDRVTIGQCRPLSKTVRFNVLKVIPAG+S S GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSS-SIGKKAFTGM 159


>ref|XP_002877637.1| EMB1080 [Arabidopsis lyrata subsp. lyrata]
           gi|297323475|gb|EFH53896.1| EMB1080 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 160

 Score =  257 bits (656), Expect = 3e-66
 Identities = 126/160 (78%), Positives = 133/160 (83%)
 Frame = +1

Query: 103 MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 282
           MAEQTEKAFLKQPKVFL               NRF+KSIGL FKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIDGAYVDKKCP 60

Query: 283 FVGEVSIRGRIVTGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 462
           F G VSIRGRI+ G CHSAKM RTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 463 GDRVTIGQCRPLSKTVRFNVLKVIPAGTSGSTGKKAFIGV 582
           GD + IGQCRPLSKTVRFNVLKVIPAG+S S GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160


>ref|XP_002285422.1| PREDICTED: 40S ribosomal protein S11 [Vitis vinifera]
           gi|296082102|emb|CBI21107.3| unnamed protein product
           [Vitis vinifera]
          Length = 160

 Score =  257 bits (656), Expect = 3e-66
 Identities = 125/160 (78%), Positives = 135/160 (84%)
 Frame = +1

Query: 103 MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 282
           MAEQTEKAFLKQPKVFL               NRF+KSIGL FKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 283 FVGEVSIRGRIVTGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 462
           F G VSIRGRI+ G CHSAKM+RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGGVSIRGRILAGTCHSAKMMRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 463 GDRVTIGQCRPLSKTVRFNVLKVIPAGTSGSTGKKAFIGV 582
           GD V IGQCRPLSKTVRFNVLKVIPAG+SG  GKKAF+ +
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGGKKAFVAM 160


>ref|XP_003609505.1| 40S ribosomal protein S11 [Medicago truncatula]
           gi|217075074|gb|ACJ85897.1| unknown [Medicago
           truncatula] gi|355510560|gb|AES91702.1| 40S ribosomal
           protein S11 [Medicago truncatula]
           gi|388497962|gb|AFK37047.1| unknown [Medicago
           truncatula]
          Length = 160

 Score =  256 bits (654), Expect = 6e-66
 Identities = 124/160 (77%), Positives = 133/160 (83%)
 Frame = +1

Query: 103 MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 282
           MAEQTEKAFLKQPKVFL               NRF+KS+GL FKTPREAI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCP 60

Query: 283 FVGEVSIRGRIVTGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 462
           F G VSIRGRI+ G CHSAKM RTI+VRR+YLHF+KKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 463 GDRVTIGQCRPLSKTVRFNVLKVIPAGTSGSTGKKAFIGV 582
           GD V IGQCRPLSKTVRFNVLKVIPAG+S   GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160


>gb|AAA32866.1| ribosomal protein S11 (probable start codon at bp 67), partial
           [Arabidopsis thaliana]
          Length = 182

 Score =  256 bits (653), Expect = 7e-66
 Identities = 125/160 (78%), Positives = 133/160 (83%)
 Frame = +1

Query: 103 MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 282
           MAEQTEKAFLKQPKVFL               NRF+K+IGL FKTPREAI+G Y+DKKCP
Sbjct: 23  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 82

Query: 283 FVGEVSIRGRIVTGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 462
           F G VSIRGRI+ G CHSAKM RTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 83  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 142

Query: 463 GDRVTIGQCRPLSKTVRFNVLKVIPAGTSGSTGKKAFIGV 582
           GD + IGQCRPLSKTVRFNVLKVIPAG+S S GKKAF G+
Sbjct: 143 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 182