BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003070
         (5318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   680   0.0  
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...   669   0.0  
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   674   0.0  
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...   654   0.0  
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   639   0.0  

>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  680 bits (1754), Expect(2) = 0.0
 Identities = 403/1152 (34%), Positives = 600/1152 (52%), Gaps = 16/1152 (1%)
 Frame = -3

Query: 3618 KLAKESVEKLGRLLKFSGVFDVPAKGRSGGLAILLKED-VELEIMGASSNQVTGKISNYC 3442
            K+ K  VE+    L FSG F V   GR+GGL +  KE+ +   ++  S N + G + +  
Sbjct: 38   KVTKNIVEQKKESLGFSGAFGVSCVGRAGGLCMFWKEETISFRMVSFSQNHICGDVGSNG 97

Query: 3441 HKDPWFFTFVYGKPLAHNRNRVWNDLRAMAPLIPGPWCLFGDFNAISSLDEKIGGRSKLT 3262
                W F  +YG P   N+++ W  ++ +     GP    GDFN I S DEK GG S+  
Sbjct: 98   DVR-WRFVGIYGWPEEENKHKTWALIKGLCDEYEGPIVFGGDFNEILSYDEKEGGASRER 156

Query: 3261 KSMLEFNNFINELGLVDLGFKGSKFTWSNNRKPKDHILERLDRAMATPEWLVNFPNAQIR 3082
            ++++ F N +++  L DL F G   TW   R P+  I ERLDR + +  WL  FP A I 
Sbjct: 157  RAIVGFRNVMDDCSLGDLRFVGQWHTWERGRSPESRIRERLDRFIVSRSWLHLFPEAFID 216

Query: 3081 TWANATSDHISMFINLKQKEEKLPRP----FKFFDMWFKHDTCMEVIEKAWKAISHDLPD 2914
                  SDH ++ +     E  +PR     F F   W   DTC EV+  AW A       
Sbjct: 217  HQVRYCSDHAAIVLRCLGNEG-MPRRRAGGFWFETFWLLDDTCEEVVRGAWNAAEGG--- 272

Query: 2913 KNFLNKLDKTKQDLSLWNKHVFGNIFTNLKATQAKLDAVLSKPFSIVNYNKAKGLKEELL 2734
                 KL    ++L  W+K  FG++   ++A + KL A   +  SI ++ +  GL+ EL 
Sbjct: 273  -RICEKLGAVARELQGWSKKTFGSLRKKIEAVEKKLHAAQGEATSIDSWERCVGLERELD 331

Query: 2733 GWYTKEEEFWKQKSSNTWLRDGARNTKFFHLSTLYRRRRNHIDKIKDKEGKWKEGRSEVG 2554
              + K E +W  +S    ++DG RNT +FH     R++RN I  I D  G+W+    E+ 
Sbjct: 332  ELHAKNEAYWYLRSRVAEVKDGDRNTSYFHHKASQRKKRNLIHGIFDGGGRWQTEGEEIE 391

Query: 2553 KSINQYFQEIFTSDHPERNE--DILSLFQPCVTDRENELLTKVPSHEDIWKVVRKMGSHK 2380
              + +YFQEIFTS  P  N+  ++L   +  VT   N++L K  S E+I+  +  M   K
Sbjct: 392  CVVERYFQEIFTSSEPSSNDFQEVLQHVKRSVTQEYNDILLKPYSKEEIFAALSDMHPCK 451

Query: 2379 APGPDGFQGSFYQNCWELIGQDVSAFVQDFFIHGTLNPG-VNETHLALIPKITNPDQASK 2203
            APGPDG    FYQ  W +IG +V  FV    +H    PG VN T++ALIPK+ +P   S+
Sbjct: 452  APGPDGMHAIFYQRFWHIIGDEVFNFVSSI-LHNYSCPGNVNCTNIALIPKVKSPTVVSE 510

Query: 2202 FRPISLCNFGYKIISKLLANRLKGMMNRIVSPFQGAFIKGRSIGDNVGLACEVFHNMKNM 2023
            FRPISLCN  YKI SK +  RLK  +  I +  Q AF+ GR I DN  +A E+FH MK  
Sbjct: 511  FRPISLCNVLYKIASKAIVLRLKRFLPCIATENQSAFVPGRLISDNSLIALEIFHTMKKR 570

Query: 2022 RDKNEGWLALKLDMAKAYDRVEWSFLDGIFGKLGFNQKWRHMIQQCVSTVSFQVMLNGSP 1843
             +  +G +A+KLDM+KAYDRVEW FL  +   +GF+ +W +++  CV+TVS+  ++NG  
Sbjct: 571  NNSRKGLMAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLVMSCVATVSYSFIINGRV 630

Query: 1842 LDRFAPERGIRQGDPLSPYLFILVSEALSRLVAKAENMEEIHGIKIKRHSPAITHLLYAD 1663
                 P RG+RQGDPLSP+LFILV++A S++V +    +EIHG K  R+ P I+HLL+AD
Sbjct: 631  CGSVTPSRGLRQGDPLSPFLFILVADAFSQMVKQKVVSKEIHGAKASRNGPEISHLLFAD 690

Query: 1662 DLILFTKANVFESGHLKKILDSYCEATGQKINFEKSSIFFSRNVSYRQKIKIKRFWKVRN 1483
            D +LFT+A   E   +  IL+ Y  A+GQKIN+EKS + FSR VS  +K ++     +R 
Sbjct: 691  DSLLFTRATRQECLTIVDILNKYEAASGQKINYEKSEVSFSRGVSCEKKEELITLLHMRQ 750

Query: 1482 FAPKEKYLGVPIMLTRKKAEDFDYLVDKIHNKIKGWKAKVLSQAGRTTLIKSVIQATPLY 1303
                +KYLG+P +  R K   F  L+D++  K++GWK K+LS+AG+  LIK+VIQA P Y
Sbjct: 751  VDRHQKYLGIPALCGRSKKVLFRELLDRMWKKLRGWKEKLLSRAGKEVLIKAVIQALPTY 810

Query: 1302 AMSTYLLPVSTCNKIDRACRDFWWSGNDSSKGIHTIGWDSICQPKETGGLGLRLARDMNT 1123
             M  Y LPV+   +I  A   FWW G    + +H + W+ +C+PK  GG+G +     N 
Sbjct: 811  LMGVYKLPVAVIQEIHSAMARFWWGGKGDERKMHWLSWEKMCKPKCMGGMGFKDLAVFND 870

Query: 1122 AMLAKLPWKAATDVHSLWTRTMFSIYGKQWIGNRRKPPDKASYFWRGKHKTFNVINGGII 943
            A+L K  W+   +  SL +R M + Y         +     SY WR      +++  G+I
Sbjct: 871  ALLGKQVWRLLHNKESLLSRVMSAKYYPHGDVRYARLGYSHSYSWRSIWGAKSLVLEGLI 930

Query: 942  WAIGDGKSTSLMKDPWLRCND----KPTTLEELGVNIPEWQDLMVADLFNTDKSDWDRAK 775
            W +GDG    +   PW+   +    K   +E L V         V DL + ++ +W+   
Sbjct: 931  WRVGDGTKIDIWSAPWVGDEEGRFIKSARVEGLEV---------VGDLMDVERKEWNVEL 981

Query: 774  ISRYLNPFLSSKILEVKVRPQINAADRLKWEKDKQGNITVKSVYKYIRPKEDLGQSSSCN 595
            I R+ N      IL + +  +    D L W   K G  +VK+ Y        LG+  + +
Sbjct: 982  IERHFNERDQQCILAIPLSTRC-LQDELTWAYSKDGTYSVKTAYM-------LGKGGNLD 1033

Query: 594  PI--TIRQIWKAPLPAHLQLFLWKLYMQALPMGDILRERKMIGDFSCPFCLKVMEAAEHL 421
                    +W   +   ++ FLW+    +LP+  +L+ R +I +  CP C +  E   HL
Sbjct: 1034 DFHRVWNILWSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHL 1093

Query: 420  FFSCEWVRTVW--FGASVGLRSHEEHHLSLRERLDRVMSWCCNKEPNIRLAGTHYACLLQ 247
            F+ C     +W   G+ + L   E+  +      D ++ W    +  +   G +   +L 
Sbjct: 1094 FYRCPMSLKLWEELGSYILLPGIEDEAM-----CDTLVRW-SQMDAKVVQKGCY---ILW 1144

Query: 246  QIWQTRNEVKFE 211
             +W  RN   FE
Sbjct: 1145 NVWVERNRRVFE 1156



 Score = 38.1 bits (87), Expect(2) = 0.0
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 3730 MTIQAWNCRGIGTTTAVQQLKDLVGKFDADIVCLSETKASK 3608
            M I  WNC+G+G    V+QL+ L+     D + +SETK +K
Sbjct: 1    MKILCWNCQGMGNPWTVRQLRRLMASNTPDSLFMSETKVTK 41


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  669 bits (1725), Expect(2) = 0.0
 Identities = 406/1212 (33%), Positives = 614/1212 (50%), Gaps = 9/1212 (0%)
 Frame = -3

Query: 3609 KESVEKLGRLLKFSGVFDVPAKGRSGGLAILLKEDVELEIMGASSNQVTGKISNYCHKDP 3430
            K   E L   L F+  F V ++GR+GGL +  +E++   ++  S + + G I +   K  
Sbjct: 41   KTESEALKSRLGFANAFGVSSRGRAGGLCVFWREELSFSLVSFSQHHICGDIDDGAKK-- 98

Query: 3429 WFFTFVYGKPLAHNRNRVWNDLRAMAPLIPGPWCLFGDFNAISSLDEKIGGRSKLTKSML 3250
            W F  +YG      ++  W+ +R +   +  P  + GDFN I S +EK GG  ++ + M 
Sbjct: 99   WRFVGIYGWAKEEEKHHTWSLMRFLCEDLSRPILMGGDFNEIMSYEEKEGGADRVRRGMY 158

Query: 3249 EFNNFINELGLVDLGFKGSKFTWSNNRKPKDHILERLDRAMATPEWLVNFPNAQIRTWAN 3070
            +F   +++L L DLG+ G   TW         I ERLDR + +P W   +PN  +     
Sbjct: 159  QFRETMDDLFLRDLGYNGVWHTWERGNSLSTCIRERLDRFVCSPSWATMYPNTIVDHSMR 218

Query: 3069 ATSDHISMFI--NLKQKEEKLPRPFKFFDMWFKHDTCMEVIEKAWKAISHDLPDKNFLNK 2896
              SDH+++ +  N  ++     R F F   W    TC E I  AW   + D    +   +
Sbjct: 219  YKSDHLAICLRSNRTRRPTSKQRRFFFETSWLLDPTCEETIRDAWTDSAGD----SLTGR 274

Query: 2895 LDKTKQDLSLWNKHVFGNIFTNLKATQAKLDAVLSKPFSIVNYNKAKGLKEELLGWYTKE 2716
            LD     L  W+    GNI   L   ++ L  +  +P S  N      L+++L   + K+
Sbjct: 275  LDLLALKLKSWSSEKGGNIGKQLGRVESDLCRLQQQPISSANCEARLTLEKKLDELHAKQ 334

Query: 2715 EEFWKQKSSNTWLRDGARNTKFFHLSTLYRRRRNHIDKIKDKEGKWKEGRSEVGKSINQY 2536
            E  W  +S    +RDG RNTK+FH     R++RN +  + D  G W E   ++      Y
Sbjct: 335  EARWYLRSRAMEVRDGDRNTKYFHHKASQRKKRNFVKGLFDASGTWCEEVDDIECVFTDY 394

Query: 2535 FQEIFTSDHPE--RNEDILSLFQPCVTDRENELLTKVPSHEDIWKVVRKMGSHKAPGPDG 2362
            F  IFTS +P   +  D+L    P VT+  N  L K  S E+++  + +M   KAPGPDG
Sbjct: 395  FTSIFTSTNPSDVQLNDVLCCVDPVVTEECNTWLLKPFSKEELYVALSQMHPCKAPGPDG 454

Query: 2361 FQGSFYQNCWELIGQDVSAFVQDFFIHGTLNPG-VNETHLALIPKITNPDQASKFRPISL 2185
                FYQ  W +IG DV+ FV    +HG+++P  +N T++ALIPK+ NP   ++FRPI+L
Sbjct: 455  MHAIFYQKFWHIIGDDVTQFVSSI-LHGSISPSCINHTNIALIPKVKNPTTPAEFRPIAL 513

Query: 2184 CNFGYKIISKLLANRLKGMMNRIVSPFQGAFIKGRSIGDNVGLACEVFHNMKNMRDKNEG 2005
            CN  YK++SK L  RLK  + R+VS  Q AF+ GR I DN  +A EVFH+MK+     +G
Sbjct: 514  CNVVYKLVSKALVIRLKDFLPRLVSENQSAFVPGRLITDNALIAMEVFHSMKHRNRSRKG 573

Query: 2004 WLALKLDMAKAYDRVEWSFLDGIFGKLGFNQKWRHMIQQCVSTVSFQVMLNGSPLDRFAP 1825
             +A+KLDM+KAYDRVEW FL  +   +GF+ +W ++I  CVS+VS+  ++NG       P
Sbjct: 574  TIAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMSCVSSVSYSFIINGGVCGSVTP 633

Query: 1824 ERGIRQGDPLSPYLFILVSEALSRLVAKAENMEEIHGIKIKRHSPAITHLLYADDLILFT 1645
             RG+R GDPLSPYLFIL+++A S+++ K    +++HG K  R  P I+HL +AD  +LFT
Sbjct: 634  ARGLRHGDPLSPYLFILIADAFSKMIQKKVQEKQLHGAKASRSGPVISHLFFADVSLLFT 693

Query: 1644 KANVFESGHLKKILDSYCEATGQKINFEKSSIFFSRNVSYRQKIKIKRFWKVRNFAPKEK 1465
            +A+  E   + +IL+ Y +A+GQKIN++KS + FS+ VS  QK ++    +++      K
Sbjct: 694  RASRQECAIIVEILNLYEQASGQKINYDKSEVSFSKGVSIAQKEELSNILQMKQVERHMK 753

Query: 1464 YLGVPIMLTRKKAEDFDYLVDKIHNKIKGWKAKVLSQAGRTTLIKSVIQATPLYAMSTYL 1285
            YLG+P +  R +   FD L+D+I  K++GWK K+LS+AG+  L+KSVIQA P Y M  Y 
Sbjct: 754  YLGIPSITGRSRTAIFDSLMDRIWKKLQGWKEKLLSRAGKEILLKSVIQAIPTYLMGVYK 813

Query: 1284 LPVSTCNKIDRACRDFWWSGNDSSKGIHTIGWDSICQPKETGGLGLRLARDMNTAMLAKL 1105
            LP S   KI  A   FWW  +D+ + IH   WDS+C  K  GG+G R  R  N A+L + 
Sbjct: 814  LPCSIIQKIHSAMARFWWGSSDTQRRIHWKNWDSLCTLKCFGGMGFRDLRVFNDALLGRQ 873

Query: 1104 PWKAATDVHSLWTRTMFSIYGKQWIGNRRKPPDKASYFWRGKHKTFNVINGGIIWAIGDG 925
             W+   + HSL  R M + Y               SY WR    +  ++  G++W IG+G
Sbjct: 874  AWRLVREPHSLLARVMKAKYYSNHDFLDAPLGVSTSYSWRSIWSSKALLKEGMVWRIGNG 933

Query: 924  KSTSLMKDPWLRCNDKPTTLEELGVNIPEWQD---LMVADLFNTDKSDWDRAKISRYLNP 754
             +  + +DPW+        L+ELG  I   +     MV++L + D+ +W  + I    N 
Sbjct: 934  TNVRIWEDPWV--------LDELGRFITSEKHGNLNMVSELIDFDRMEWKVSLIETVFNE 985

Query: 753  FLSSKILEVKVRPQINAADRLKWEKDKQGNITVKSVYKYIRPKEDLGQSSSCNPITIRQI 574
                 IL + +   +   D L W   K  + +VK+ Y   +     G   S +   I  I
Sbjct: 986  RDIKCILSIPL-SSLPLKDELTWAFTKNAHYSVKTAYMLGKG----GNLDSFHQAWI-DI 1039

Query: 573  WKAPLPAHLQLFLWKLYMQALPMGDILRERKMIGDFSCPFCLKVMEAAEHLFFSCEWVRT 394
            W   +   ++ FLW+L    LP+  +L+ R M+ D  CP      E+  H  F C ++R 
Sbjct: 1040 WSMEVSPKVKHFLWRLGTNTLPVRSLLKHRHMLDDDLCPRGCGEPESQFHAIFGCPFIRD 1099

Query: 393  VWFGASVGLRSHEEHHLSLRERLDRVMSWCCNKEPNIRLAGTHYACLLQQIWQTRNEVKF 214
            +W    V         L+    +   +      + ++R  G   A +L   W  RN + F
Sbjct: 1100 LW----VDSGCDNFRALTTDTAMTEALVNSHGLDASVRTKGAFMAWVL---WSERNSIVF 1152

Query: 213  EKRKANRERLL-RESRFRAEKCFQAFREDPITSQPVLVVSAFNLDSIFPCVHNESIVIRF 37
             +       LL R SR   E      R  P  +       A     ++     E I +  
Sbjct: 1153 NQSSTPPHILLARVSRLVEEHGTYTARIYPNRN-----CCAIPSARVWAAPPPEVIKLNV 1207

Query: 36   DASYCRESGWAG 1
            DAS    +GW G
Sbjct: 1208 DASLA-SAGWVG 1218



 Score = 39.7 bits (91), Expect(2) = 0.0
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 3730 MTIQAWNCRGIGTTTAVQQLKDLVGKFDADIVCLSETKASKGE 3602
            M I  WNCRG+G    V+QL+     +  DI+ LSET  +K E
Sbjct: 1    MNILCWNCRGVGNPRTVRQLRKWSTFYAPDIMFLSETMINKTE 43


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  674 bits (1738), Expect = 0.0
 Identities = 381/1083 (35%), Positives = 582/1083 (53%), Gaps = 17/1083 (1%)
 Frame = -3

Query: 3414 VYGKPLAHNRNRVWNDLRAMAPLIPGPWCLFGDFNAISSLDEKIGGRSKLTKSMLEFNNF 3235
            +YG   +  ++R W  +R +      PW + GDFN I    EK GGR K   +M EF + 
Sbjct: 351  LYGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHA 410

Query: 3234 INELGLVDLGFKGSKFTWSNNRKPKD-HILERLDRAMATPEWLVNFPNAQIRTWANATSD 3058
            + + GL DLGF+G  FTW N+   ++ +I ERLDRA+A PEW   FP A++       SD
Sbjct: 411  LTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSD 470

Query: 3057 HISMFINLKQKEEKLP-----RPFKFFDMWFKHDTCMEVIEKAWKAISHDLPDKNFLNKL 2893
            H  + I L+ K + +        F+F   W + +   EV+++AW  +S  L        L
Sbjct: 471  HRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWD-VSAGLQGLPVHASL 529

Query: 2892 DKTKQDLSLWNKHVFGNIFTNLKATQAKLDAVLSKPFSIVNYNKAKGLKEELLGWYTKEE 2713
                  LS W+ +V G++   +K  + +L+    +P S     + + L+  L     + +
Sbjct: 530  AGVAAGLSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVD 589

Query: 2712 EFWKQKSSNTWLRDGARNTKFFHLSTLYRRRRNHIDKIKDKEGKWKEGRSEVGKSINQYF 2533
             +WKQ++   WL  G RNT FFH S   RRRRN I+K++ ++G W E   +    I ++F
Sbjct: 590  IYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFF 649

Query: 2532 QEIFTSDHPERNEDILSLFQPCVTDRENELLTKVPSHEDIWKVVRKMGSHKAPGPDGFQG 2353
            +++FTS+  + ++ +L +    V+   NE L    + E++ + +  +G  KAPGPDG   
Sbjct: 650  KQLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPA 709

Query: 2352 SFYQNCWELIGQDVSAFVQDFFIHGTLNPGVNETHLALIPKITNPDQASKFRPISLCNFG 2173
             FY+ CW+++G+ V+  V +    G +  G N+  + LIPK+  P+     RPISLCN  
Sbjct: 710  GFYKACWDVVGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKKPELIKDLRPISLCNVC 769

Query: 2172 YKIISKLLANRLKGMMNRIVSPFQGAFIKGRSIGDNVGLACEVFHNMKNMRDKNEGWLAL 1993
            YK++SK+LANRLK ++  ++SP Q AF+ GR I DN+ +A E+ H M+N R    G+ A 
Sbjct: 770  YKLVSKVLANRLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAF 829

Query: 1992 KLDMAKAYDRVEWSFLDGIFGKLGFNQKWRHMIQQCVSTVSFQVMLNGSPLDRFAPERGI 1813
            KLDM+KAYDRVEWSFL  +  KLGF+  W ++I +CVSTV++++ +NG   + F+P RG+
Sbjct: 830  KLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRGL 889

Query: 1812 RQGDPLSPYLFILVSEALSRLVAKAENMEEIHGIKIKRHSPAITHLLYADDLILFTKANV 1633
            RQGDPLSPYLF+L +E  S L++K E    +HGI+I + +P+++HLL+ADD ++  +AN 
Sbjct: 890  RQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANG 949

Query: 1632 FESGHLKKILDSYCEATGQKINFEKSSIFFSRNVSYRQKIKIKRFWKVRNFAPKEKYLGV 1453
             E+  L+ IL  Y E +GQ IN +KS++ FS N S  +K  +     ++     E+YLG+
Sbjct: 950  GEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGL 1009

Query: 1452 PIMLTRKKAEDFDYLVDKIHNKIKGWKAKVLSQAGRTTLIKSVIQATPLYAMSTYLLPVS 1273
            P+ + R + + F YL ++I  +I+GWK K+LS+AG+  LIK+V QA P +AM  + L   
Sbjct: 1010 PVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKD 1069

Query: 1272 TCNKIDRACRDFWWSGNDSSKGIHTIGWDSICQPKETGGLGLRLARDMNTAMLAKLPWKA 1093
             C++I +    +WWS  +    +H + W+ +  PK  GGLG R     N AMLAK  W+ 
Sbjct: 1070 LCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRL 1129

Query: 1092 ATDVHSLWTRTMFSIYGKQWIGNRRKPPDKASYFWRGKHKTFNVINGGIIWAIGDGKSTS 913
              D  SL +R + + Y       R K     SY WR   K   V+  G+IW +GDG   +
Sbjct: 1130 IQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKIN 1189

Query: 912  LMKDPWLRCNDKPTTLEELGVNIPEWQDLMVADLFNTDKSDWDRAKISRYLNPFLSSKIL 733
            +  DPW+        +   G N+       V +L +     WD   +S+    F    + 
Sbjct: 1190 IWADPWIPRGWSRKPMTPRGANLV----TKVEELIDPYTGTWDEDLLSQ---TFWEEDVA 1242

Query: 732  EVKVRP-QINAADRLKWEKDKQGNITVKSVYKYIRPKEDLGQSSSCNPIT---------I 583
             +K  P  +   D L W  D +G  TVKS YK  R  E     + C  ++          
Sbjct: 1243 AIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFW 1302

Query: 582  RQIWKAPLPAHLQLFLWKLYMQALPMGDILRERKMIGDFSCPFCLKVMEAAEHLFFSCEW 403
            +++WK  +P  ++ FLW++    L +   L  R M  D  C  C +  E A HLFF C+ 
Sbjct: 1303 KKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKP 1362

Query: 402  VRTVWFGASV-GLRSHEEHHLSLRERLDRVMSWCCNKEPNIRLAGTHYACLLQQIWQTRN 226
            V+ VW   ++  LRS  E   S +  L  +    C  E N R   T     L Q W+ RN
Sbjct: 1363 VKKVWQALNLEELRSMLEQQTSGKNVLQSIY---CRPE-NER---TSAIVCLWQWWKERN 1415

Query: 225  EVK 217
            EV+
Sbjct: 1416 EVR 1418


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  654 bits (1686), Expect(2) = 0.0
 Identities = 386/1175 (32%), Positives = 607/1175 (51%), Gaps = 20/1175 (1%)
 Frame = -3

Query: 3609 KESVEKLGRLLKFSGVFDVPAKGRSGGLAILLKEDVELEIMGASSNQVTGKISNYCHKDP 3430
            K  VE L   L FS  F V + GR+GGL +  KE+V   ++  S + + G + +   K  
Sbjct: 41   KIEVEALKSWLGFSNAFGVASVGRAGGLCLYWKEEVMFSLVSFSQHHICGDVEDGNKK-- 98

Query: 3429 WFFTFVYGKPLAHNRNRVWNDLRAMAPLIPGPWCLFGDFNAISSLDEKIGGRSKLTKSML 3250
            W F  VYG      ++  W+ LR +      P  L GDFN I S  EK GG +++ + M+
Sbjct: 99   WRFVGVYGWAKEEEKHLTWSLLRHLCEDTSLPILLGGDFNEILSAAEKEGGANRVRREMI 158

Query: 3249 EFNNFINELGLVDLGFKGSKFTWSNNRKPKDHILERLDRAMATPEWLVNFPNAQIRTWAN 3070
             F + ++ L L DLG+ G+ +TW   R P   I ERLDR + +  WL  +P++       
Sbjct: 159  NFRDTLDTLALRDLGYVGTWYTWERGRSPSTCIRERLDRYLCSNSWLDLYPDSVPEHTIR 218

Query: 3069 ATSDHISMFINLKQ--KEEKLPRPFKFFDMWFKHDTCMEVIEKAWKAISHDLPDKNFLNK 2896
              SDH ++ +  ++  +     R   F   W   D C  V+ ++W+    ++       +
Sbjct: 219  YKSDHSAIVLRSQRAGRPRGKTRRLHFETSWLLDDECEAVVRESWENSEGEV----MTGR 274

Query: 2895 LDKTKQDLSLWNKHVFGNIFTNLKATQAKLDAVLSKPFSIVNYNKAKGLKEELLGWYTKE 2716
            +    Q L  W+   F N+   ++  +  L    + P S     +   L+++L   + K 
Sbjct: 275  VASMGQCLVRWSTKKFKNLSKQIETAEKALSVAQNNPISESACQECVLLEKKLDELHAKH 334

Query: 2715 EEFWKQKSSNTWLRDGARNTKFFHLSTLYRRRRNHIDKIKDKEGKWKEGRSEVGKSINQY 2536
            E +W  +S    ++DG +NTK+FH     R++RN +  + D  G W+E    +      Y
Sbjct: 335  EAYWYLRSRVAEVKDGDKNTKYFHHKASQRKKRNFVKGLFDGLGTWREEADHIENIFTSY 394

Query: 2535 FQEIFTSDHPE--RNEDILSLFQPCVTDRENELLTKVPSHEDIWKVVRKMGSHKAPGPDG 2362
            F  IFTS +P     E ++S+ +P VT+  N  L +  S ++I   +++M   KAPGPDG
Sbjct: 395  FSSIFTSSNPSDLSLEAVMSVIEPVVTEEHNLKLLEPFSKDEILAALQQMHPCKAPGPDG 454

Query: 2361 FQGSFYQNCWELIGQDVSAFVQDFFIHGTLNPG-VNETHLALIPKITNPDQASKFRPISL 2185
                FYQ  W ++G DV++F+ +  +HG  +P  VN T++ALIPK+ NP +A++FRPI+L
Sbjct: 455  MHVIFYQRFWHIVGDDVTSFISNI-LHGHSSPSCVNNTNIALIPKVKNPTKAAEFRPIAL 513

Query: 2184 CNFGYKIISKLLANRLKGMMNRIVSPFQGAFIKGRSIGDNVGLACEVFHNMKNMRDKNEG 2005
            CN  YK++SK +  RLK  +  I+S  Q AF+ GR I DN  +A EVFH+MKN     +G
Sbjct: 514  CNVLYKLMSKAIVMRLKSFLPEIISENQSAFVPGRLITDNALIAMEVFHSMKNRNRSRKG 573

Query: 2004 WLALKLDMAKAYDRVEWSFLDGIFGKLGFNQKWRHMIQQCVSTVSFQVMLNGSPLDRFAP 1825
             +A+KLDM+KAYDRVEW FL  +   +GF+ +W ++I + VS+V++  ++NGS      P
Sbjct: 574  TIAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSVCGSVVP 633

Query: 1824 ERGIRQGDPLSPYLFILVSEALSRLVAKAENMEEIHGIKIKRHSPAITHLLYADDLILFT 1645
             RG+RQGDPLSPYLFI+V++A S+++ +    +++HG K  R  P I+HL +ADD +LFT
Sbjct: 634  ARGLRQGDPLSPYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLFT 693

Query: 1644 KANVFESGHLKKILDSYCEATGQKINFEKSSIFFSRNVSYRQKIKIKRFWKVRNFAPKEK 1465
            +AN  E   +  IL+ Y  A+GQKIN+EKS + +SR VS  QK ++     +R     EK
Sbjct: 694  RANRQECTIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEK 753

Query: 1464 YLGVPIMLTRKKAEDFDYLVDKIHNKIKGWKAKVLSQAGRTTLIKSVIQATPLYAMSTYL 1285
            YLG+P +  R K   FD L+D+I  K++GWK K+LS+AG+  L+KSVIQA P Y M  Y 
Sbjct: 754  YLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVYK 813

Query: 1284 LPVSTCNKIDRACRDFWWSGNDSSKGIHTIGWDSICQPKETGGLGLRLARDMNTAMLAKL 1105
             PV    KI  A   FWW  +D+ + IH   WDS+C  K  GG+G +     N A+L + 
Sbjct: 814  FPVFIIQKIQSAMARFWWGSSDTQRKIHWKNWDSMCNLKCFGGMGFKDLTIFNDALLGRQ 873

Query: 1104 PWKAATDVHSLWTRTMFSIYGKQWIGNRRKPPDKASYFWRGKHKTFNVINGGIIWAIGDG 925
             W+   +  SL  R M + Y              +SY W     +  ++  G+IW +G+G
Sbjct: 874  AWRLTREPQSLLGRVMKAKYFPNCDFLNAPLGHSSSYSWSSIWSSKALLKEGVIWRVGNG 933

Query: 924  KSTSLMKDPWLRCNDKPTTLEELG---VNIPEWQDLMVADLFNTDKSDWDRAKISRYLNP 754
               ++  DPW+        L+E G    + P      V++L + D+ +W     +  L  
Sbjct: 934  SQINMWSDPWV--------LDEGGRFLTSTPHASIRWVSELIDFDRMEWK----TSLLES 981

Query: 753  FLSSKILEVKVRPQINAA---DRLKWEKDKQGNITVKSVYKYIRPKEDLGQSSSCNPI-- 589
            FL+ + L   +   ++A    D L W   K    +VK+ Y        +G+  + +    
Sbjct: 982  FLNERDLRCILASPLSATPVPDELTWAFTKDATYSVKTAYM-------IGKGGNLDNFHQ 1034

Query: 588  TIRQIWKAPLPAHLQLFLWKLYMQALPMGDILRERKMIGDFSCPFCLKVMEAAEHLFFSC 409
                IW   +   ++ FLW+L   +LP+  +L+ R +  D  CP+    +E   H  F C
Sbjct: 1035 AWVDIWSLDVSPKVRHFLWRLCTTSLPVRSLLKHRHLTDDDLCPWGCGEIETQRHAIFDC 1094

Query: 408  EWVRTVWFGASVGLRSHEEHHLSLRERLDRVMSWCCNKEPNIRLAGTHYACLLQQIWQTR 229
              +R +W  +        +  +S+    D ++SW  + +  +R+ G + A     IW  R
Sbjct: 1095 PKMRDLWLDSGCQNLCSRDASMSM---CDLLVSW-RSLDGKLRIKGAYLAWC---IWGER 1147

Query: 228  NEVKFEKRKA-------NRERLLRESRFRAEKCFQ 145
            N   F  +            RL+ E+   A + +Q
Sbjct: 1148 NAKIFNNKTTPSSVLMQRVSRLVEENGSHARRIYQ 1182



 Score = 42.0 bits (97), Expect(2) = 0.0
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = -2

Query: 3730 MTIQAWNCRGIGTTTAVQQLKDLVGKFDADIVCLSETKASKGE 3602
            M I  WNCRG+G   +V+QL+    +F  DI+ +SET  +K E
Sbjct: 1    MNILCWNCRGLGNPWSVRQLRSWSNQFAPDIIFVSETMINKIE 43


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  639 bits (1649), Expect(2) = 0.0
 Identities = 380/1093 (34%), Positives = 566/1093 (51%), Gaps = 16/1093 (1%)
 Frame = -3

Query: 3618 KLAKESVEKLGRLLKFSGVFDVPAKGRSGGLAILLKEDVELEIMGASSNQVTGKISNYCH 3439
            K+  +    L   L FSG F V  +G SGGLA+       + + G +S+ +   +S    
Sbjct: 43   KMRDKQARNLMWSLGFSGSFAVSCEGLSGGLALFWTTAYTVSLRGFNSHFIDVLVSTE-E 101

Query: 3438 KDPWFFTFVYGKPLAHNRNRVWNDLRAMAPLIPGPWCLFGDFNAISSLDEKIGGRSKLTK 3259
              PW  +FVYG+P    R+  WN LR +     GPW   GDFN +  LDE +G R +   
Sbjct: 102  LPPWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEP 161

Query: 3258 SMLEFNNFINELGLVDLGFKGSKFTWSNNRKPKDHILERLDRAMATPEWLVNFPNAQIRT 3079
             M  F + +++ GL+DLGF G KFTWSN +    +   RLDRA+A  E+   F +  +  
Sbjct: 162  HMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVEN 221

Query: 3078 WANATSDHISMFINLKQK---EEKLP--RPFKFFDMWFKHDTCMEVIEKAWKAISHDLPD 2914
                +SDH ++ I+L ++   + ++P  + F+F   W + +   EV+E +W+  S     
Sbjct: 222  VITTSSDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVG 281

Query: 2913 -KNFLNKLDKTKQDLSLWNKHVFGNIFTNLKATQAKLDAVLSKPFSIVNYNKAKGLKEEL 2737
             +   + L +    L  W+K  FG++   +   + KL ++   P + V   + K ++++L
Sbjct: 282  LRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQL 341

Query: 2736 LGWYTKEEEFWKQKSSNTWLRDGARNTKFFHLSTLYRRRRNHIDKIKDKEGKWKEGRSEV 2557
               + KEE   +Q+S   WLR+G RNT FFH     RRR N I ++   +G     +  +
Sbjct: 342  CELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGI 401

Query: 2556 GKSINQYFQEIFTSDHPERNEDILSLFQPCVTDRENELLTKVPSHEDIWKVVRKMGSHKA 2377
             +    +++ +F+S+  +  E++L      V D  N  L K  ++E+I   + +MGS KA
Sbjct: 402  KRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKA 461

Query: 2376 PGPDGFQGSFYQNCWELIGQDVSAFVQDFFIHGTLNPGVNETHLALIPKITNPDQASKFR 2197
            PGPDGF   FYQ  W ++ + +   V+ F +   +  G+ ++ + LIPK+ N    SKFR
Sbjct: 462  PGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFR 521

Query: 2196 PISLCNFGYKIISKLLANRLKGMMNRIVSPFQGAFIKGRSIGDNVGLACEVFHNMKNMRD 2017
            PISLCN  YKI SK+LANRLK  +  IVS FQ AF+ GR I D+  +A E  H ++   +
Sbjct: 522  PISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHN 581

Query: 2016 KNEGWLALKLDMAKAYDRVEWSFLDGIFGKLGFNQKWRHMIQQCVSTVSFQVMLNGSPLD 1837
            KN  + ALK+DM KAYDRVEW++L G   KLGF+Q W + + +CVS+V + V +NG    
Sbjct: 582  KNP-FFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTK 640

Query: 1836 RFAPERGIRQGDPLSPYLFILVSEALSRLVAKAENMEEIHGIKIKRHSPAITHLLYADDL 1657
               P RGIRQGDP+SPYLF+L +E LS L+ K E   E+ GIK  RH P I+HLL+ADD 
Sbjct: 641  PVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDS 700

Query: 1656 ILFTKANVFESGHLKKILDSYCEATGQKINFEKSSIFFSRNVSYRQKIKIKRFWKVRNFA 1477
            I F KA+      LK  L SYC A+GQKIN  KSSIFF +      KI +K   +V N  
Sbjct: 701  IFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEV 760

Query: 1476 PKEKYLGVPIMLTRKKAEDFDYLVDKIHNKIKGWKAKVLSQAGRTTLIKSVIQATPLYAM 1297
             ++ YLG+P  +       F +L ++I  ++ GW  + LS+AG  T++K+V QA P Y M
Sbjct: 761  LQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVM 820

Query: 1296 STYLLPVSTCNKIDRACRDFWWSGNDSSKGIHTIGWDSICQPKETGGLGLRLARDMNTAM 1117
            S + +PVS C K+     D WW   D  K +H   W  +  PK  GG+G R     N AM
Sbjct: 821  SCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAM 880

Query: 1116 LAKLPWKAATDVHSLWTRTMFSIYGKQWIGNRRKPPDKASYFWRGKHKTFNVINGGIIWA 937
            L +  W+  TD  SL +R +   Y           P   S+ WR       ++  G+ W 
Sbjct: 881  LGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWG 940

Query: 936  IGDGKSTSLMKDPWLRCNDKPTTLEELGVNIPEWQDLMVADLFNTDKSDWDRAKISRYLN 757
            +GDGK+  +  D W+    +P  +  L    P   D  V+ L N D   WD   I     
Sbjct: 941  VGDGKTIKIFSDNWIP-GFRPQLVTTLS---PFPTDATVSCLMNEDARCWDGDLIRSLFP 996

Query: 756  PFLSSKILEVKVRPQINAADRLKWEKDKQGNITVKSVYKYIRPKEDLG-QSSSCNPITIR 580
              ++ +IL++ +  +   AD   W  DK G  +V+S Y   R +     QS+S   +  R
Sbjct: 997  VDIAKEILQIPI-SRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASR 1055

Query: 579  ---------QIWKAPLPAHLQLFLWKLYMQALPMGDILRERKMIGDFSCPFCLKVMEAAE 427
                      +WK   P  +++ LW+   + L  G  LR R +     C FC +  +  E
Sbjct: 1056 LLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNR-DDTVE 1114

Query: 426  HLFFSCEWVRTVW 388
            H+F  C +   +W
Sbjct: 1115 HVFLFCPFAAQIW 1127



 Score = 32.0 bits (71), Expect(2) = 0.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 3712 NCRGIGTTTAVQQLKDLVGKFDADIVCLSETK 3617
            NCRG+G+   V +L+ LV      +V LSETK
Sbjct: 12   NCRGLGSAATVGELRWLVKSLRPSLVFLSETK 43