BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00003045
         (1836 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510854.1| F-box and wd40 domain protein, putative [Ric...   574   e-161
ref|XP_002865885.1| hypothetical protein ARALYDRAFT_495266 [Arab...   566   e-159
ref|NP_200011.1| zinc finger CCCH domain-containing protein 63 [...   565   e-158
ref|XP_003534022.1| PREDICTED: zinc finger CCCH domain-containin...   563   e-158
ref|NP_194274.2| zinc finger CCCH domain-containing protein 48 [...   563   e-158

>ref|XP_002510854.1| F-box and wd40 domain protein, putative [Ricinus communis]
            gi|223549969|gb|EEF51456.1| F-box and wd40 domain
            protein, putative [Ricinus communis]
          Length = 445

 Score =  574 bits (1480), Expect = e-161
 Identities = 282/458 (61%), Positives = 335/458 (73%), Gaps = 21/458 (4%)
 Frame = -2

Query: 1664 MDVDNGGGR----RVYNRFGGSQNSGPS------KICHYFQQGRCTRNPCRFLH------ 1533
            MD+D  GG     RV+NR GG+Q S  +      K+CH+++ GRC R PC +LH      
Sbjct: 1    MDLDAQGGNTNSNRVFNRLGGAQLSSSTNDPRQQKVCHHWRAGRCNRFPCPYLHRELPPP 60

Query: 1532 -----VLSEDSSNDGIGSKRSNGFANDRDYAGPQGFARRKSNPNFSSNHTVPSKWXXXXX 1368
                      SSN+   SKR  GF+ND  ++GP G  R       S N    S W     
Sbjct: 61   PPPHGSNGHSSSNNNAPSKR--GFSNDSGFSGPSGSRR-------SGNFNNASSWGRVGN 111

Query: 1367 XXXXXXXGYRPPPKVQDKLCQFWIDGKCSYGDSCRYRHQWFSSDSFTMLTQLPGHEQVIN 1188
                         +  +K+C FW+ GKCSYGD CR+ H W   +SF++LTQL GH++V+ 
Sbjct: 112  NSNKVL-------RKTEKVCNFWVQGKCSYGDKCRFLHSWNLGESFSLLTQLDGHQKVVT 164

Query: 1187 GIAFPMGSDKLYSGSKDESVRVWDCQTGQCAGVVNLGGEVGTMMSEGPWIFVGIPNFVKA 1008
            GIA P GSDKLY+GSKDE+VRVWDCQ+GQC  V+ LGGEVG M+SEGPWIFVGIPN VKA
Sbjct: 165  GIALPSGSDKLYTGSKDETVRVWDCQSGQCMAVIQLGGEVGCMISEGPWIFVGIPNVVKA 224

Query: 1007 WNTQTNTDLSLSGPVGQVYALAVGNGMLFAGTQDGNILAWRFSATNNCFEPIASLKGHTG 828
            WNTQTNTDLSL+GPVGQVYAL VGN +LFAGTQDG IL W+++A    FEP ASL GHT 
Sbjct: 225  WNTQTNTDLSLTGPVGQVYALVVGNDLLFAGTQDGAILVWKYNAATFNFEPAASLPGHTV 284

Query: 827  AVVSLIVGANRLYSGSTDSTIRVWDLDTLQCIQTLKEHTSVVMSVLCWEQFLLSCSLDQT 648
            AVVSL+VGANRLYSGS D +IRVW+L+TLQC+QTL +HTSVVMSVLCW+QFLLSCSLDQ 
Sbjct: 285  AVVSLVVGANRLYSGSMDHSIRVWNLETLQCVQTLTDHTSVVMSVLCWDQFLLSCSLDQK 344

Query: 647  IKVWAATETGSLEVTYTHKEEHGVLALCGMHDAEAKPVLLCSCNNNVVHLYDLPSFNERG 468
            IKVWAATE+G+L+VTYTH EEHG+L LCGMHD E KPVLLCSCN+N V L DLPSF+ERG
Sbjct: 345  IKVWAATESGNLDVTYTHNEEHGLLTLCGMHDLEGKPVLLCSCNDNSVRLLDLPSFSERG 404

Query: 467  KIFSKEEIRAIQIGPGGLFFTGDGTGELKVWKWSETPS 354
            KIF+K+EIRAIQ GPGGLFFTGDGTG+++VWKW   P+
Sbjct: 405  KIFAKQEIRAIQTGPGGLFFTGDGTGQVRVWKWVAEPT 442


>ref|XP_002865885.1| hypothetical protein ARALYDRAFT_495266 [Arabidopsis lyrata subsp.
            lyrata] gi|297311720|gb|EFH42144.1| hypothetical protein
            ARALYDRAFT_495266 [Arabidopsis lyrata subsp. lyrata]
          Length = 440

 Score =  566 bits (1458), Expect = e-159
 Identities = 272/451 (60%), Positives = 331/451 (73%), Gaps = 14/451 (3%)
 Frame = -2

Query: 1664 MDVD-NGGGRRVYNRFGGSQNSGPS-----------KICHYFQQGRCTRNPCRFLHVLSE 1521
            MD D NGG +RV+NR GG    G S           K+C +++ GRC R+PC +LH    
Sbjct: 1    MDFDLNGGNKRVFNRLGGGGGGGGSTRTMAPTDTRQKVCFHWRAGRCNRSPCPYLH---R 57

Query: 1520 DSSNDGIGSKRSNGFANDRDYAGPQGFA--RRKSNPNFSSNHTVPSKWXXXXXXXXXXXX 1347
            +    G G  +  G+ N R  A   GFA    +  P F+ N    S W            
Sbjct: 58   ELPGPGPGQGQGPGYTNKR-VAEESGFAGPSHRRGPGFNGNSN--SSWGRFGGN------ 108

Query: 1346 GYRPPPKVQDKLCQFWIDGKCSYGDSCRYRHQWFSSDSFTMLTQLPGHEQVINGIAFPMG 1167
              R   K + K+C FW+DG C+YGD CRY H W   +SF++LTQL GHE++++GIA P G
Sbjct: 109  --RTVTKTE-KVCNFWVDGNCTYGDKCRYLHCWSKGESFSLLTQLDGHEKLVSGIALPSG 165

Query: 1166 SDKLYSGSKDESVRVWDCQTGQCAGVVNLGGEVGTMMSEGPWIFVGIPNFVKAWNTQTNT 987
            SDKLY+GSKDE++RVWDC +GQC GV+ LGGEVG ++SEGPW+ VG+PN VKAWN +TN 
Sbjct: 166  SDKLYTGSKDETLRVWDCASGQCTGVLKLGGEVGCVLSEGPWLLVGMPNLVKAWNIETNA 225

Query: 986  DLSLSGPVGQVYALAVGNGMLFAGTQDGNILAWRFSATNNCFEPIASLKGHTGAVVSLIV 807
            + SL+GPVGQVY+L VG  +LFAGTQDG+ILAWR++A  NCFEP ASL GHT AVV+L V
Sbjct: 226  EQSLNGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAATNCFEPAASLTGHTLAVVTLYV 285

Query: 806  GANRLYSGSTDSTIRVWDLDTLQCIQTLKEHTSVVMSVLCWEQFLLSCSLDQTIKVWAAT 627
            GANRLYSGS D TI+VW LD LQCIQTL +HTSVVMS++CW+QFLLSCSLD T+K+WAA 
Sbjct: 286  GANRLYSGSMDKTIKVWSLDNLQCIQTLTDHTSVVMSLICWDQFLLSCSLDNTVKIWAAV 345

Query: 626  ETGSLEVTYTHKEEHGVLALCGMHDAEAKPVLLCSCNNNVVHLYDLPSFNERGKIFSKEE 447
            E G+LE TYTHKEEHGVLALCG+HDAEAKPVLLCSCN+N + LYDLPSF ERGKIF+K+E
Sbjct: 346  EGGNLEATYTHKEEHGVLALCGVHDAEAKPVLLCSCNDNTLRLYDLPSFTERGKIFAKQE 405

Query: 446  IRAIQIGPGGLFFTGDGTGELKVWKWSETPS 354
            IRAIQIGPGG+FFTGDGTG++KVWKW   P+
Sbjct: 406  IRAIQIGPGGIFFTGDGTGQVKVWKWCTEPT 436


>ref|NP_200011.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana]
            gi|10177733|dbj|BAB11046.1| unnamed protein product
            [Arabidopsis thaliana] gi|332008771|gb|AED96154.1| zinc
            finger CCCH domain-containing protein 63 [Arabidopsis
            thaliana]
          Length = 437

 Score =  565 bits (1455), Expect = e-158
 Identities = 272/448 (60%), Positives = 333/448 (74%), Gaps = 11/448 (2%)
 Frame = -2

Query: 1664 MDVD-NGGGRRVYNRFGGSQNS----GPS----KICHYFQQGRCTRNPCRFLHVLSEDSS 1512
            MD D NGG +RV+NR GG   S     P+    K+C +++ GRC R+PC +LH    +  
Sbjct: 1    MDFDLNGGNKRVFNRLGGGGGSTRPMAPTDTRQKVCFHWRAGRCNRSPCPYLH---RELP 57

Query: 1511 NDGIGSKRSNGFANDRDYAGPQGFA--RRKSNPNFSSNHTVPSKWXXXXXXXXXXXXGYR 1338
              G G  +  G+ N R  A   GFA    +  P F+ N +  S W              R
Sbjct: 58   GPGPGQGQGPGYTNKR-VAEESGFAGPSHRRGPGFNGNSS--SSWGRFGGN--------R 106

Query: 1337 PPPKVQDKLCQFWIDGKCSYGDSCRYRHQWFSSDSFTMLTQLPGHEQVINGIAFPMGSDK 1158
               K + K+C FW+DG C+YGD CRY H W   +SF +LTQL GHE++++GIA P GSDK
Sbjct: 107  TVTKTE-KVCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDK 165

Query: 1157 LYSGSKDESVRVWDCQTGQCAGVVNLGGEVGTMMSEGPWIFVGIPNFVKAWNTQTNTDLS 978
            LY+GSKDE++RVWDC +GQC GV+ LGGE+G ++SEGPW+ VG+PN VKAWN +TN D S
Sbjct: 166  LYTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQS 225

Query: 977  LSGPVGQVYALAVGNGMLFAGTQDGNILAWRFSATNNCFEPIASLKGHTGAVVSLIVGAN 798
            LSGPVGQVY+L VG  +LFAGTQDG+ILAWR++A  NCFEP ASL GHT AVV+L VGAN
Sbjct: 226  LSGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGAN 285

Query: 797  RLYSGSTDSTIRVWDLDTLQCIQTLKEHTSVVMSVLCWEQFLLSCSLDQTIKVWAATETG 618
            RLYSGS D TI+VW LD LQCIQTL +H+SVVMS++CW+QFLLSCSLD T+K+WAA E G
Sbjct: 286  RLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGG 345

Query: 617  SLEVTYTHKEEHGVLALCGMHDAEAKPVLLCSCNNNVVHLYDLPSFNERGKIFSKEEIRA 438
            +LEVTYTHKEEHGVLALCG+HDAEAKPVLLC+CN+N + LYDLPSF ERGKIF+K+EIRA
Sbjct: 346  NLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSFTERGKIFAKQEIRA 405

Query: 437  IQIGPGGLFFTGDGTGELKVWKWSETPS 354
            IQIGPGG+FFTGDGTG++KVWKW   P+
Sbjct: 406  IQIGPGGIFFTGDGTGQVKVWKWCTEPT 433


>ref|XP_003534022.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like
            [Glycine max]
          Length = 426

 Score =  563 bits (1451), Expect = e-158
 Identities = 265/433 (61%), Positives = 332/433 (76%), Gaps = 1/433 (0%)
 Frame = -2

Query: 1664 MDVDNGGGRRVYNRFGGSQNSGPSKICHYFQQGRCTRNPCRFLHVLSEDSSNDGIGSKRS 1485
            MDVD GG +RVYNR GG       K+C+++Q G+C R PC FLH  SE  +N    S  +
Sbjct: 1    MDVD-GGNKRVYNRLGGDAKH--QKVCYHWQAGKCNRYPCPFLH--SESPAN----SHHA 51

Query: 1484 NGFANDRDYAGPQGFARRKSNPNFSSNHTVPSKWXXXXXXXXXXXXGYRPPPKVQ-DKLC 1308
            NG ++ R Y    GF+  + +PNF++       W            G      V+ +K+C
Sbjct: 52   NGTSSKRTYDN-SGFSGPRRSPNFNNT------WGRGGGRGGGGGGGAGRGVVVKAEKVC 104

Query: 1307 QFWIDGKCSYGDSCRYRHQWFSSDSFTMLTQLPGHEQVINGIAFPMGSDKLYSGSKDESV 1128
             +WI G CSYG+ C++ H W   D F++LTQL GH++ ++ IAFP GSDKLY+GS DE+ 
Sbjct: 105  NYWIQGSCSYGERCKFLHSWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETA 164

Query: 1127 RVWDCQTGQCAGVVNLGGEVGTMMSEGPWIFVGIPNFVKAWNTQTNTDLSLSGPVGQVYA 948
            R+WDCQ G+C GV+NLGGEVG M+SEGPW+FVGIPNFVKAWNTQ  ++LSL+GPVGQVYA
Sbjct: 165  RIWDCQCGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYA 224

Query: 947  LAVGNGMLFAGTQDGNILAWRFSATNNCFEPIASLKGHTGAVVSLIVGANRLYSGSTDST 768
            L V N MLFAGTQDG+ILAW+F+   NCFEP ASLKGH+  VVSL+VGANRLYSGS D+T
Sbjct: 225  LVVNNDMLFAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNT 284

Query: 767  IRVWDLDTLQCIQTLKEHTSVVMSVLCWEQFLLSCSLDQTIKVWAATETGSLEVTYTHKE 588
            I+VW+L+TLQC+QTL EHTSVVMSVLCW+QFLLSCSLD+T+KVW ATE+G+LEVTY+H E
Sbjct: 285  IKVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYSHNE 344

Query: 587  EHGVLALCGMHDAEAKPVLLCSCNNNVVHLYDLPSFNERGKIFSKEEIRAIQIGPGGLFF 408
            E+G+L LCGMHD++ KP+LLC+CN+N VHLYDLPSF ERGKI +K+E+RAIQIGP G+FF
Sbjct: 345  ENGILTLCGMHDSQGKPILLCACNDNTVHLYDLPSFAERGKILTKQEVRAIQIGPNGIFF 404

Query: 407  TGDGTGELKVWKW 369
            TGDGTGE++VW W
Sbjct: 405  TGDGTGEVRVWNW 417


>ref|NP_194274.2| zinc finger CCCH domain-containing protein 48 [Arabidopsis thaliana]
            gi|75334157|sp|Q9FNZ2.1|C3H48_ARATH RecName: Full=Zinc
            finger CCCH domain-containing protein 48; Short=AtC3H48;
            AltName: Full=Zinc finger CCCH domain and WD40
            repeat-containing protein 1 gi|12057164|emb|CAC19847.1|
            zfwd1 protein [Arabidopsis thaliana]
            gi|109946599|gb|ABG48478.1| At4g25440 [Arabidopsis
            thaliana] gi|332659660|gb|AEE85060.1| zinc finger CCCH
            domain-containing protein 48 [Arabidopsis thaliana]
          Length = 430

 Score =  563 bits (1450), Expect = e-158
 Identities = 268/451 (59%), Positives = 332/451 (73%), Gaps = 13/451 (2%)
 Frame = -2

Query: 1664 MDVD-NGGGRRVYNRFGGSQN----SGPSKICHYFQQGRCTRNPCRFLHVLSEDSSNDGI 1500
            MD+D NGG +RV+ R GG  N        K+C +++ GRC R PC +LH       +  +
Sbjct: 1    MDLDMNGGNKRVFQRLGGGSNRPTTDSNQKVCFHWRAGRCNRYPCPYLHRELPGPGSGPV 60

Query: 1499 GSKRSNGFANDRDYAGPQ-----GFARRKSN-PNFSSNHTVPSKWXXXXXXXXXXXXGYR 1338
             +  +   A++  +AGP      GF+   +N   F  N TV                   
Sbjct: 61   AASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGGNRTVTKT---------------- 104

Query: 1337 PPPKVQDKLCQFWIDGKCSYGDSCRYRHQWFSSDSFTMLTQLPGHEQVINGIAFPMGSDK 1158
                  +KLC+FW+DG C YGD CRY H W   DSF++LTQL GH++V+ GIA P GSDK
Sbjct: 105  ------EKLCKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDK 158

Query: 1157 LYSGSKDESVRVWDCQTGQCAGVVNLGGEVGTMMSEGPWIFVGIPNFVKAWNTQTNTDLS 978
            LY+ SKDE+VR+WDC +GQC GV+NLGGEVG ++SEGPW+ VG+PN VKAWN Q N DLS
Sbjct: 159  LYTASKDETVRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLS 218

Query: 977  LSGPVGQVYALAVGNGMLFAGTQDGNILAWRFSATNNCFEPIASLKGHTGAVVSLIVGAN 798
            L+GPVGQVY+L VG  +LFAGTQDG+IL WR+++T +CF+P ASL GHT AVVSL VGAN
Sbjct: 219  LNGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGAN 278

Query: 797  RLYSGSTDSTIRVWDLDTLQCIQTLKEHTSVVMSVLCWEQFLLSCSLDQTIKVWAATETG 618
            RLYSG+ D++I+VW LD LQCIQTL EHTSVVMS++CW+QFLLSCSLD T+K+WAATE G
Sbjct: 279  RLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGG 338

Query: 617  SLEVTYTHKEEHGVLALCGMHDAEAKPVLLCSCNNNVVHLYDLPSFNERGKIFSKEEIRA 438
            +LEVTYTHKEE+GVLALCG+HDAEAKPVLLCSCN+N +HLYDLPSF ERGKI +K+EIR+
Sbjct: 339  NLEVTYTHKEEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPSFTERGKILAKQEIRS 398

Query: 437  IQIGPGGLFFTGDGTGELKVWKWS--ETPSL 351
            IQIGPGG+FFTGDG+G++KVWKWS   TP L
Sbjct: 399  IQIGPGGIFFTGDGSGQVKVWKWSTESTPIL 429