BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002409
         (809 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06506.1| RNA polymerase [Elaeis guineensis]                     181   1e-43
ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrat...   181   2e-43
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2...   180   3e-43
ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|4...   179   5e-43
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   177   2e-42

>gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
          Length = 145

 Score =  181 bits (460), Expect = 1e-43
 Identities = 92/141 (65%), Positives = 112/141 (79%), Gaps = 2/141 (1%)
 Frame = -1

Query: 656 IFDEVFTVDKMDPDGKKFDKVSRIEASVEQSTIKMQLDVNTEIYRIGVNDKFTMMLASTL 477
           +F+++FT+ ++DPDGKKFDKVSRIEA  EQ  + MQLDVNTEIY + V DKFTM+LA TL
Sbjct: 5   LFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVLAPTL 64

Query: 476 SSDGTPDTGYFTPGGRKTLADKYEYVMHGKLYKIAESVAG--TTVDVYASFGGLLMKLTV 303
           S DGTPD+GY+  G RK+LADK+EYVMHGKLYKI+E  +G    V++YASFGGLLM L  
Sbjct: 65  SLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEESSGPNVKVEIYASFGGLLMMLKG 124

Query: 302 PLGHAAKCELDQRLFLLMKKV 240
              +A   ELDQRLFLLM+KV
Sbjct: 125 DPSNATNFELDQRLFLLMRKV 145


>ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
           gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 146

 Score =  181 bits (459), Expect = 2e-43
 Identities = 88/146 (60%), Positives = 111/146 (76%), Gaps = 1/146 (0%)
 Frame = -1

Query: 674 MAAEAAIFDEVFTVDKMDPDGKKFDKVSRIEASVEQSTIKMQLDVNTEIYRIGVNDKFTM 495
           MA+   +F+++F VDK+DPDGKKFDKV+R++A+     + M LDVNTE+Y + V DKFT+
Sbjct: 1   MASNIILFEDIFVVDKLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTL 60

Query: 494 MLASTLSSDGTPDTGYFTPGGRKTLADKYEYVMHGKLYKIAESVAGT-TVDVYASFGGLL 318
            LA TL+ DGTPDTGYFTPG +KTLADKYEY+MHGKLYKI+E    T   ++Y SFGGLL
Sbjct: 61  ALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLL 120

Query: 317 MKLTVPLGHAAKCELDQRLFLLMKKV 240
           M L     H +  ELDQRLFLLM+K+
Sbjct: 121 MLLKGDPAHISHFELDQRLFLLMRKL 146


>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|297817262|ref|XP_002876514.1| hypothetical protein
           ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
           gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
           thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
           subunit, putative [Arabidopsis thaliana]
           gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
           thaliana] gi|30793811|gb|AAP40358.1| unknown protein
           [Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
           hypothetical protein ARALYDRAFT_907465 [Arabidopsis
           lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
           polymerase Rpb8 [Arabidopsis thaliana]
          Length = 146

 Score =  180 bits (457), Expect = 3e-43
 Identities = 88/146 (60%), Positives = 110/146 (75%), Gaps = 1/146 (0%)
 Frame = -1

Query: 674 MAAEAAIFDEVFTVDKMDPDGKKFDKVSRIEASVEQSTIKMQLDVNTEIYRIGVNDKFTM 495
           MA+   +F+++F VDK+DPDGKKFDKV+R+EA      + M LDVNTE+Y + V DKFT+
Sbjct: 1   MASNIIMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTL 60

Query: 494 MLASTLSSDGTPDTGYFTPGGRKTLADKYEYVMHGKLYKIAESVAGT-TVDVYASFGGLL 318
            +A TL+ DGTPDTGYFTPG +KTLADKYEY+MHGKLYKI+E    T   ++Y SFGGLL
Sbjct: 61  AMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLL 120

Query: 317 MKLTVPLGHAAKCELDQRLFLLMKKV 240
           M L     H +  ELDQRLFLLM+K+
Sbjct: 121 MLLQGDPAHISHFELDQRLFLLMRKL 146


>ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II
           and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III
           16.5 kDa subunit [Arabidopsis thaliana]
           gi|21555812|gb|AAM63939.1| RNA polymerase II subunit,
           putative [Arabidopsis thaliana]
           gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis
           thaliana] gi|110735704|dbj|BAE99832.1| RNA polymerase I,
           II and III 16.5 kDa subunit [Arabidopsis thaliana]
           gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8
           [Arabidopsis thaliana]
          Length = 146

 Score =  179 bits (455), Expect = 5e-43
 Identities = 87/146 (59%), Positives = 111/146 (76%), Gaps = 1/146 (0%)
 Frame = -1

Query: 674 MAAEAAIFDEVFTVDKMDPDGKKFDKVSRIEASVEQSTIKMQLDVNTEIYRIGVNDKFTM 495
           MA+   +F+++F VD++DPDGKKFDKV+R++A+     + M LDVNTE+Y + V DKFT+
Sbjct: 1   MASNIILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTL 60

Query: 494 MLASTLSSDGTPDTGYFTPGGRKTLADKYEYVMHGKLYKIAESVAGT-TVDVYASFGGLL 318
            LA TL+ DGTPDTGYFTPG +KTLADKYEY+MHGKLYKI+E    T   ++Y SFGGLL
Sbjct: 61  ALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLL 120

Query: 317 MKLTVPLGHAAKCELDQRLFLLMKKV 240
           M L     H +  ELDQRLFLLM+K+
Sbjct: 121 MLLKGDPAHISHFELDQRLFLLMRKL 146


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  177 bits (450), Expect = 2e-42
 Identities = 92/151 (60%), Positives = 114/151 (75%), Gaps = 3/151 (1%)
 Frame = -1

Query: 683 PEKMAAEAAIFDEVFTVDKMDPDGKKFDKVSRIEASVEQSTIKMQLDVNTEIYRIGVNDK 504
           P KM     +F+++FTV ++DPDGKKFD+VSRIEA  EQ  + MQLDV TE+Y +   D+
Sbjct: 248 PRKMVEH--LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDR 305

Query: 503 FTMMLASTLSSDGTPDTGYFTPGGRKTLADKYEYVMHGKLYKIAE---SVAGTTVDVYAS 333
           FTM+LA TL+ DGTPDTG++T  GRKTLADK++YVMHGKLYKI+E   S   T V++YAS
Sbjct: 306 FTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYAS 365

Query: 332 FGGLLMKLTVPLGHAAKCELDQRLFLLMKKV 240
           FGGLLM L      AA  ELDQRLFLL++KV
Sbjct: 366 FGGLLMMLKGDPSSAASFELDQRLFLLIRKV 396