BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002371
         (2671 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003604568.1| 40S ribosomal protein S4 [Medicago truncatul...   466   e-128
ref|XP_003547932.1| PREDICTED: 40S ribosomal protein S4-1-like [...   464   e-128
ref|XP_002268192.1| PREDICTED: 40S ribosomal protein S4-like [Vi...   464   e-128
ref|XP_003544057.1| PREDICTED: 40S ribosomal protein S4-1-like [...   463   e-127
ref|NP_001235826.1| 40S ribosomal S4 protein [Glycine max] gi|22...   462   e-127

>ref|XP_003604568.1| 40S ribosomal protein S4 [Medicago truncatula]
            gi|355505623|gb|AES86765.1| 40S ribosomal protein S4
            [Medicago truncatula]
          Length = 264

 Score =  466 bits (1199), Expect = e-128
 Identities = 227/257 (88%), Positives = 240/257 (93%)
 Frame = -3

Query: 1139 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 960
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 959  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 780
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSV+D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120

Query: 779  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDVGNV 600
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLI+ANDTIKLDLENNKI DFIKFDVGNV
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDVGNV 180

Query: 599  IMXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 420
            +M           VIK+REKHKGTFET +VQDA+GH FATRL NV+TIGKGTKPWVSLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGTFETIHVQDASGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 419  GKGIKLSIIEEAKKRQA 369
            GKGIKL++IEEA+KRQA
Sbjct: 241  GKGIKLTVIEEARKRQA 257


>ref|XP_003547932.1| PREDICTED: 40S ribosomal protein S4-1-like [Glycine max]
          Length = 264

 Score =  464 bits (1193), Expect = e-128
 Identities = 227/257 (88%), Positives = 239/257 (92%)
 Frame = -3

Query: 1139 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 960
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 959  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 780
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSV+D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120

Query: 779  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDVGNV 600
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLE NKIVDFIKFDVGNV
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNV 180

Query: 599  IMXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 420
            +M           VIK+REKHKG+FET +VQDATGH FATR+ NV+TIGKGTKPW+SLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 419  GKGIKLSIIEEAKKRQA 369
            GKGIKLSIIEEA+KR A
Sbjct: 241  GKGIKLSIIEEARKRIA 257


>ref|XP_002268192.1| PREDICTED: 40S ribosomal protein S4-like [Vitis vinifera]
          Length = 264

 Score =  464 bits (1193), Expect = e-128
 Identities = 226/257 (87%), Positives = 239/257 (92%)
 Frame = -3

Query: 1139 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 960
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 959  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 780
            V+AILMQRH+LVDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 779  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDVGNV 600
            FKLCKV+ VQ GQKGIPYLNTYDGRTIRYPDPLI+ANDT+KLDLE+NKIVDFIKFDVGNV
Sbjct: 121  FKLCKVKGVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTVKLDLESNKIVDFIKFDVGNV 180

Query: 599  IMXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 420
            +M           VIKSREKHKGTFET +VQDATGH FATRL NV+TIGKGTKPWV+LPK
Sbjct: 181  VMVTGGRNRGRVGVIKSREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVTLPK 240

Query: 419  GKGIKLSIIEEAKKRQA 369
            GKGIKLSIIEEAKKR A
Sbjct: 241  GKGIKLSIIEEAKKRLA 257


>ref|XP_003544057.1| PREDICTED: 40S ribosomal protein S4-1-like [Glycine max]
          Length = 264

 Score =  463 bits (1191), Expect = e-127
 Identities = 225/257 (87%), Positives = 239/257 (92%)
 Frame = -3

Query: 1139 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 960
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 959  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 780
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAK 120

Query: 779  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDVGNV 600
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLIRANDT+KLDLE NKIVDFIKFDVGNV
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNV 180

Query: 599  IMXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 420
            +M           VIK+REKHKG+FET +VQDATGH FATR+ NV+TIGKGTKPW+SLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 419  GKGIKLSIIEEAKKRQA 369
            GKGIKLSIIEEA+KR A
Sbjct: 241  GKGIKLSIIEEARKRIA 257


>ref|NP_001235826.1| 40S ribosomal S4 protein [Glycine max] gi|22138108|gb|AAM93434.1| 40S
            ribosomal S4 protein [Glycine max]
            gi|255641970|gb|ACU21252.1| unknown [Glycine max]
          Length = 264

 Score =  462 bits (1190), Expect = e-127
 Identities = 226/257 (87%), Positives = 239/257 (92%)
 Frame = -3

Query: 1139 MARGLKKHLKRLNAPHHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 960
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 959  VVAILMQRHILVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVKDEEAK 780
            V+AILMQRH+LVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSV+D+EAK
Sbjct: 61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120

Query: 779  FKLCKVRSVQLGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFIKFDVGNV 600
            FKLCKVRSVQ GQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLE NKIVDFIKFDVGNV
Sbjct: 121  FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNV 180

Query: 599  IMXXXXXXXXXXXVIKSREKHKGTFETTYVQDATGHVFATRLSNVYTIGKGTKPWVSLPK 420
            +M           VIK+REKHKG+FET +VQD+TGH FATR+ NV+TIGKGTKPW+SLPK
Sbjct: 181  VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDSTGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 419  GKGIKLSIIEEAKKRQA 369
            GKGIKLSIIEEA+KR A
Sbjct: 241  GKGIKLSIIEEARKRIA 257