BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002306
         (1181 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]   425   e-116
ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containi...   415   e-113
ref|XP_003608531.1| Pentatricopeptide repeat-containing protein ...   394   e-107
ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containi...   380   e-103
ref|NP_201558.3| delayed greening 1 protein [Arabidopsis thalian...   363   5e-98

>emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]
          Length = 490

 Score =  425 bits (1092), Expect = e-116
 Identities = 226/396 (57%), Positives = 280/396 (70%), Gaps = 4/396 (1%)
 Frame = -3

Query: 1179 KIKQNLLKKGVFPTPKIIHTLRKKEIQKYNRKTKKTTQHEKPLTESQKQEISEQAHFQTI 1000
            KIK+NL++KGV+PTPKIIHTLRKKEIQK  RK+K+     +  TE +  E++E+AHF+T+
Sbjct: 16   KIKRNLIRKGVYPTPKIIHTLRKKEIQKSIRKSKRLANQNQSPTEDE--EVNEEAHFRTL 73

Query: 999  KNEYRQVKKVLTSDKNDNLMVGKPWEXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGKPWE 820
            K EY ++ K L                                          MVGKPWE
Sbjct: 74   KREYTKLSKAL------------------------------------------MVGKPWE 91

Query: 819  RLEINGLKELGNRSKEYGGEKLKGEYLVELSEILAKRNK-HWLLDEDIEAGEWMESREGR 643
            R    G KE+ N S EYGGE+LK E+L ELSEIL KR +  WLLD+D+E  +     E R
Sbjct: 92   R---PGFKEILNGSVEYGGERLKREHLRELSEILEKRGEVRWLLDDDVEVEQGSSGNERR 148

Query: 642  KLSK-KREVGEAETIQFLVKRLSGTDLSMRDWKFSKMMQQSGLPFTERQLLSIVEGLGAV 466
              S  +R  G+A+ I+FLV RL+  D+++RDWKFS++M+QSGL FTERQLL IVE LGA 
Sbjct: 149  GWSPARRRGGDADAIRFLVDRLTAADITIRDWKFSRVMKQSGLQFTERQLLRIVEELGAR 208

Query: 465  GCWKHALSVVEWVYNLEEF--KHHKSRFVYTKLLAVLGKARKHAEALQIFNLMREDCRIY 292
            G WKHALSVVEWVY  ++   + +KSRFVYTKLLAVLGKA++  EAL IFNLMR DC IY
Sbjct: 209  GHWKHALSVVEWVYTDKDKDNRRYKSRFVYTKLLAVLGKAKRPHEALDIFNLMRGDCHIY 268

Query: 291  PDMPAYHSISVTLGQAGLVKELTDVIECMRQKPYKRIRNTCSKDWDPCLEPDVVVYNAVL 112
            PDM AYHS++VTLGQAGL+KEL ++IECMRQKP KRI+N C K+W+  LEPDVV++NAVL
Sbjct: 269  PDMAAYHSVAVTLGQAGLLKELLNIIECMRQKPPKRIKNMCRKNWNALLEPDVVIFNAVL 328

Query: 111  NACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAME 4
            NACVP++QWKGVSWV +Q+RK  L+PNGATYGLAME
Sbjct: 329  NACVPTQQWKGVSWVFKQLRKCSLKPNGATYGLAME 364


>ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Cucumis sativus]
            gi|449499902|ref|XP_004160949.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Cucumis sativus]
          Length = 860

 Score =  415 bits (1067), Expect = e-113
 Identities = 218/401 (54%), Positives = 269/401 (67%), Gaps = 8/401 (1%)
 Frame = -3

Query: 1179 KIKQNLLKKGVFPTPKIIHTLRKKEIQKYNRKTKKTTQHEK----PLTESQKQEISEQAH 1012
            KIK+ LL+KGV+PTP+I+ +LRKKEIQKYNRK K+  + +     PL+ESQKQ I+E+ H
Sbjct: 21   KIKRMLLQKGVYPTPRIVRSLRKKEIQKYNRKLKRVAERQSAQSPPLSESQKQLIAEETH 80

Query: 1011 FQTIKNEYRQVKKVLTSDKNDNLMVGKPWEXXXXXXXXXXXXXXXXXXXXXXXXXXXMVG 832
            F T+++EY++  K + +     LMVG+                                 
Sbjct: 81   FLTLRSEYKEFSKAIEAKPAGGLMVGR--------------------------------- 107

Query: 831  KPWERLEINGLKELGNRSKEYGGEKLKGEYLVELSEILAKRN---KHWLLDEDIEAGE-W 664
             PWERLE    KEL      Y  + LK E L EL ++   R      W LD+D+E  E W
Sbjct: 108  -PWERLERVNFKELTGVRTGYNRDSLKKESLRELRKLFETRKLEESQWALDDDVELKEEW 166

Query: 663  MESREGRKLSKKREVGEAETIQFLVKRLSGTDLSMRDWKFSKMMQQSGLPFTERQLLSIV 484
            +ES   R    KR  G+ E I+FLV RLS   +SMRDWKFS+MM +SGL F E QLL I+
Sbjct: 167  LESENDRYDVVKRRRGDGEVIRFLVDRLSSGPISMRDWKFSRMMIRSGLQFNEGQLLKIL 226

Query: 483  EGLGAVGCWKHALSVVEWVYNLEEFKHHKSRFVYTKLLAVLGKARKHAEALQIFNLMRED 304
            + LGA GCWK ALSVVEWVYNL+   H KSRFVYTKLLAVLG ARK  EALQIFNLMR D
Sbjct: 227  DALGAKGCWKQALSVVEWVYNLKSHSHSKSRFVYTKLLAVLGMARKPQEALQIFNLMRGD 286

Query: 303  CRIYPDMPAYHSISVTLGQAGLVKELTDVIECMRQKPYKRIRNTCSKDWDPCLEPDVVVY 124
             +IYPDM AYHSI+VTLGQAGL+K+L  VIE MRQ+P K++RN C K WDP +EPD+V+Y
Sbjct: 287  GQIYPDMAAYHSIAVTLGQAGLLKQLLKVIEFMRQQPSKKVRNKCRKSWDPAVEPDLVIY 346

Query: 123  NAVLNACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAMEV 1
            NA+LNAC+P+ +WKGV WV  Q+RKSGL+PNGATYGL+MEV
Sbjct: 347  NAILNACIPTLEWKGVYWVFTQLRKSGLRPNGATYGLSMEV 387


>ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355509586|gb|AES90728.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 877

 Score =  394 bits (1012), Expect = e-107
 Identities = 203/397 (51%), Positives = 267/397 (67%), Gaps = 4/397 (1%)
 Frame = -3

Query: 1179 KIKQNLLKKGVFPTPKIIHTLRKKEIQKYNRKTKKTTQHEKPLTESQKQEISEQAHFQTI 1000
            KI+++L++KGV PTPKIIHTLRKK+IQK+NRK  +  Q   PL++SQKQ + E+ HFQ +
Sbjct: 26   KIRRSLIQKGVTPTPKIIHTLRKKQIQKHNRKLNRQNQLNPPLSKSQKQTLEEEQHFQEL 85

Query: 999  KNEYRQVKKVLTSDKNDNLMVGKPWEXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGKPWE 820
            K+EY+Q  + L  ++  N                                   ++GKPWE
Sbjct: 86   KHEYKQFTQNLEENQGGN-------------------------------KGLCLIGKPWE 114

Query: 819  RLEINGLKELGNRSKEYGGEKLKGEYLVELSEILAKRNKH---WLLDEDIEAGE-WMESR 652
             +E     E    + E+ GEKLK E L+EL E+  +R      W+ ++DIE  E W +  
Sbjct: 115  GVEKVDFLERIKVNYEHRGEKLKRESLIELKEMFRERKMDELKWVFEDDIEINEVWFDEN 174

Query: 651  EGRKLSKKREVGEAETIQFLVKRLSGTDLSMRDWKFSKMMQQSGLPFTERQLLSIVEGLG 472
               K  K  +  E + ++FLV RL   ++  +DWKFS++M+ SGL FTE QL+ I+E LG
Sbjct: 175  NNGKRKKTSKRSEVQVVRFLVDRLCDKEIRAKDWKFSRLMKLSGLSFTEGQLMMIIEMLG 234

Query: 471  AVGCWKHALSVVEWVYNLEEFKHHKSRFVYTKLLAVLGKARKHAEALQIFNLMREDCRIY 292
               CWK ALSVV+WVYN ++ +  +SRFVYTKLLAVLGKAR+  EALQIFN+M  + R+Y
Sbjct: 235  VKRCWKQALSVVQWVYNSKDHRKFQSRFVYTKLLAVLGKARRPKEALQIFNMMLGNIRVY 294

Query: 291  PDMPAYHSISVTLGQAGLVKELTDVIECMRQKPYKRIRNTCSKDWDPCLEPDVVVYNAVL 112
            PDM AYHSI+VTLGQAGL+KEL +++ECMRQKP + ++    K+WDP LEPDVV+YNAVL
Sbjct: 295  PDMAAYHSIAVTLGQAGLLKELLNIVECMRQKP-ETLKYMYRKNWDPTLEPDVVIYNAVL 353

Query: 111  NACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAMEV 1
            NACVPS+QWKGVSWV +QMRKS L+PNGATYGLAMEV
Sbjct: 354  NACVPSKQWKGVSWVFQQMRKSSLKPNGATYGLAMEV 390


>ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Glycine max]
          Length = 865

 Score =  380 bits (975), Expect = e-103
 Identities = 207/399 (51%), Positives = 260/399 (65%), Gaps = 6/399 (1%)
 Frame = -3

Query: 1179 KIKQNLLKKGVFPTPKIIHTLRKKEIQKYNRKTKKTTQHEKPLTESQKQEISEQAHFQTI 1000
            KI++ L++KGV PTPKI+HTLRKKEIQK+NRK K   Q   PLT++Q Q  +E+ H +TI
Sbjct: 22   KIRRRLIEKGVQPTPKIVHTLRKKEIQKHNRKLK--AQPAPPLTQAQAQAAAEEQHLETI 79

Query: 999  KNEYRQVKKVLTSDKNDNLMVGKPWEXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGKPWE 820
            K E+R+V                                              M GKPWE
Sbjct: 80   KREFRRV----------------------------------------------MAGKPWE 93

Query: 819  RLEINGLKELGNRSKEY--GGEKLKGEYLVELSEILAKRNKH---WLLDEDIEAGE-WME 658
             ++     E   R +    GGEKL+ E L EL E+   R      W+ D D+E  E W +
Sbjct: 94   GIQKVEFLEKARRPERDCGGGEKLRRESLTELKEMFEARKMDELKWVFDADLEIDEVWFD 153

Query: 657  SREGRKLSKKREVGEAETIQFLVKRLSGTDLSMRDWKFSKMMQQSGLPFTERQLLSIVEG 478
               G +  K ++  E E I+FLV RLS  +++M+DWKFS+MM+ SGLPFTE QLL IVE 
Sbjct: 154  EGYGAR-GKTQKRSEVEVIRFLVHRLSDKEITMKDWKFSRMMKMSGLPFTEGQLLRIVEL 212

Query: 477  LGAVGCWKHALSVVEWVYNLEEFKHHKSRFVYTKLLAVLGKARKHAEALQIFNLMREDCR 298
            LG   CWK ALSVV+WVYN ++ +  +SRFVYTKLL+VLGKA +  EALQIFN+MRE   
Sbjct: 213  LGFKRCWKQALSVVQWVYNYKDHRKFQSRFVYTKLLSVLGKAGRPNEALQIFNMMRESIH 272

Query: 297  IYPDMPAYHSISVTLGQAGLVKELTDVIECMRQKPYKRIRNTCSKDWDPCLEPDVVVYNA 118
            IYPD+ AYHS++VTLGQAGL+KEL +++ECMRQKP   +     K+WDP LEPDVV+YNA
Sbjct: 273  IYPDIAAYHSVAVTLGQAGLLKELLNIVECMRQKPKAFMHR---KNWDPVLEPDVVIYNA 329

Query: 117  VLNACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAMEV 1
            VLNACVPS+QWKGVSWV +Q+RKSGL+PNGATYGLAMEV
Sbjct: 330  VLNACVPSKQWKGVSWVFKQLRKSGLKPNGATYGLAMEV 368


>ref|NP_201558.3| delayed greening 1 protein [Arabidopsis thaliana]
            gi|223635752|sp|Q9FJW6.2|PP451_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g67570, chloroplastic; AltName: Full=Protein DELAYED
            GREENING 1; AltName: Full=Protein EMBRYO DEFECTIVE 1408;
            Flags: Precursor gi|332010978|gb|AED98361.1| delayed
            greening 1 protein [Arabidopsis thaliana]
          Length = 798

 Score =  363 bits (932), Expect = 5e-98
 Identities = 201/396 (50%), Positives = 263/396 (66%), Gaps = 3/396 (0%)
 Frame = -3

Query: 1179 KIKQNLLKKGVFPTPKIIHTLRKKEIQKYNRKTKKTTQHEKPL-TESQKQEISEQAHFQT 1003
            KIK+ LLK GV PTPKI++ LRKKEIQK+NR+TK+ T+ E  + TE+QKQ + E+A FQT
Sbjct: 25   KIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARFQT 84

Query: 1002 IKNEYRQVKKVLTSDKNDNLMVGKPWEXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGKPW 823
            ++ EY+Q  + ++  +  ++ +                                MVG PW
Sbjct: 85   LRREYKQFTRSISGKRGGDVGL--------------------------------MVGNPW 112

Query: 822  ERLEINGLKEL--GNRSKEYGGEKLKGEYLVELSEILAKRNKHWLLDEDIEAGEWMESRE 649
            E +E   LKEL  G R +E    +LK E L EL +IL K +  W+LD+D++  E+   +E
Sbjct: 113  EGIERVKLKELVSGVRREEVSAGELKKENLKELKKILEK-DLRWVLDDDVDVEEFDLDKE 171

Query: 648  GRKLSKKREVGEAETIQFLVKRLSGTDLSMRDWKFSKMMQQSGLPFTERQLLSIVEGLGA 469
                 + R  GEA  ++ LV RLSG +++ + WKF +MM QSGL FTE Q+L IV+ LG 
Sbjct: 172  FDPAKRWRNEGEA--VRVLVDRLSGREINEKHWKFVRMMNQSGLQFTEDQMLKIVDRLGR 229

Query: 468  VGCWKHALSVVEWVYNLEEFKHHKSRFVYTKLLAVLGKARKHAEALQIFNLMREDCRIYP 289
               WK A +VV WVY+ ++ KH +SRFVYTKLL+VLG AR+  EALQIFN M  D ++YP
Sbjct: 230  KQSWKQASAVVHWVYSDKKRKHLRSRFVYTKLLSVLGFARRPQEALQIFNQMLGDRQLYP 289

Query: 288  DMPAYHSISVTLGQAGLVKELTDVIECMRQKPYKRIRNTCSKDWDPCLEPDVVVYNAVLN 109
            DM AYH I+VTLGQAGL+KEL  VIE MRQKP K  +N   K+WDP LEPD+VVYNA+LN
Sbjct: 290  DMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAILN 349

Query: 108  ACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAMEV 1
            ACVP+ QWK VSWV  ++RK+GL+PNGATYGLAMEV
Sbjct: 350  ACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEV 385