BLASTX nr result

ID: Coptis21_contig00002295 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002295
         (976 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP34362.1| fiber protein Fb15 [Gossypium barbadense]              107   3e-21
ref|XP_002325265.1| predicted protein [Populus trichocarpa] gi|2...   107   6e-21
ref|XP_004146334.1| PREDICTED: uncharacterized protein LOC101202...   106   7e-21
ref|XP_002451641.1| hypothetical protein SORBIDRAFT_04g005070 [S...   106   7e-21
gb|ABK96249.1| unknown [Populus trichocarpa x Populus deltoides]      106   7e-21

>gb|AAP34362.1| fiber protein Fb15 [Gossypium barbadense]
          Length = 90

 Score =  107 bits (268), Expect = 3e-21
 Identities = 48/72 (66%), Positives = 61/72 (84%)
 Frame = +3

Query: 90  MAMRKLYSEIKGLKLRELPSYLKPRLTIEKVKEAINRGVDNYQKKYIWTSSPDPIYHVCF 269
           MAMRK+YSEIKG+KL+E+P Y KP L++  +K+++ RG+DNY  KYI T S +P+YHVCF
Sbjct: 1   MAMRKVYSEIKGMKLKEVPGYFKPMLSMGYLKKSVQRGLDNYHAKYIETDSIEPLYHVCF 60

Query: 270 GGMIFSYLVALP 305
           GGMIFSYLVALP
Sbjct: 61  GGMIFSYLVALP 72


>ref|XP_002325265.1| predicted protein [Populus trichocarpa] gi|222866699|gb|EEF03830.1|
           predicted protein [Populus trichocarpa]
          Length = 145

 Score =  107 bits (266), Expect = 6e-21
 Identities = 49/73 (67%), Positives = 62/73 (84%)
 Frame = +3

Query: 87  KMAMRKLYSEIKGLKLRELPSYLKPRLTIEKVKEAINRGVDNYQKKYIWTSSPDPIYHVC 266
           +MA+RKLYSEIKGLK++ELP ++KP L+I  VK+A+ RG+DNY  KYI TSS DP+ HVC
Sbjct: 55  QMALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVC 114

Query: 267 FGGMIFSYLVALP 305
           +GGMI SYL+ALP
Sbjct: 115 YGGMILSYLIALP 127


>ref|XP_004146334.1| PREDICTED: uncharacterized protein LOC101202935 [Cucumis sativus]
           gi|449502973|ref|XP_004161794.1| PREDICTED:
           uncharacterized protein LOC101223947 isoform 1 [Cucumis
           sativus] gi|449502976|ref|XP_004161795.1| PREDICTED:
           uncharacterized protein LOC101223947 isoform 2 [Cucumis
           sativus]
          Length = 90

 Score =  106 bits (265), Expect = 7e-21
 Identities = 48/72 (66%), Positives = 61/72 (84%)
 Frame = +3

Query: 90  MAMRKLYSEIKGLKLRELPSYLKPRLTIEKVKEAINRGVDNYQKKYIWTSSPDPIYHVCF 269
           MAM++ +SEIKGLK++ELP+Y+KP L+I+  K+A+ R +DNY  KYI TSS DP+ HVCF
Sbjct: 1   MAMKQFFSEIKGLKVKELPAYVKPMLSIDAAKKAVERSLDNYNAKYIQTSSIDPLLHVCF 60

Query: 270 GGMIFSYLVALP 305
           GGMIFSYLVALP
Sbjct: 61  GGMIFSYLVALP 72


>ref|XP_002451641.1| hypothetical protein SORBIDRAFT_04g005070 [Sorghum bicolor]
           gi|241931472|gb|EES04617.1| hypothetical protein
           SORBIDRAFT_04g005070 [Sorghum bicolor]
          Length = 91

 Score =  106 bits (265), Expect = 7e-21
 Identities = 47/72 (65%), Positives = 63/72 (87%)
 Frame = +3

Query: 90  MAMRKLYSEIKGLKLRELPSYLKPRLTIEKVKEAINRGVDNYQKKYIWTSSPDPIYHVCF 269
           MA+R LY+EI+G+K+RE+P+YLKPRLT + VK++ ++ VD Y +KYI TSSPDP++HVCF
Sbjct: 1   MALRALYNEIRGMKVREVPAYLKPRLTWDNVKKSADQAVDRYIEKYIDTSSPDPLFHVCF 60

Query: 270 GGMIFSYLVALP 305
           GGM+FSYLV LP
Sbjct: 61  GGMVFSYLVNLP 72


>gb|ABK96249.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 90

 Score =  106 bits (265), Expect = 7e-21
 Identities = 49/72 (68%), Positives = 61/72 (84%)
 Frame = +3

Query: 90  MAMRKLYSEIKGLKLRELPSYLKPRLTIEKVKEAINRGVDNYQKKYIWTSSPDPIYHVCF 269
           MA+RKLYSEIKGLK++ELP ++KP L+I  VK+A+ RG+DNY  KYI TSS DP+ HVC+
Sbjct: 1   MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 60

Query: 270 GGMIFSYLVALP 305
           GGMI SYL+ALP
Sbjct: 61  GGMILSYLIALP 72


Top