BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002266
         (1313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523275.1| PREDICTED: exosome complex exonuclease RRP44...   294   4e-77
ref|XP_002276939.1| PREDICTED: exosome complex exonuclease RRP44...   293   5e-77
ref|XP_003629102.1| Exosome complex exonuclease [Medicago trunca...   290   6e-76
ref|XP_004169783.1| PREDICTED: exosome complex exonuclease RRP44...   286   1e-74
ref|XP_004136994.1| PREDICTED: exosome complex exonuclease RRP44...   286   1e-74

>ref|XP_003523275.1| PREDICTED: exosome complex exonuclease RRP44-like [Glycine max]
          Length = 934

 Score =  294 bits (752), Expect = 4e-77
 Identities = 147/181 (81%), Positives = 163/181 (90%), Gaps = 1/181 (0%)
 Frame = +2

Query: 2   AGNGGIAYALFVSKDRRIPKIRIQTRQLGNLLDERIVVAVDTWNRLSRYPSGHYVKTIGE 181
           AG+GGIA+ALFVSKDRRIPKIRIQTRQL NLLD+RI+VAVD+W+R SRYPSGHYV+TIGE
Sbjct: 364 AGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGE 423

Query: 182 ISDKDTESEVVLIENDINS*PFSAQVLACLPPIPGSVSSENLMNPIRQDLRDLRVFSVDP 361
           I D+DTESEVVLIENDIN+ PFS+QVLACLPP+P  VSSE+L NPIR+DLR LRVFSVDP
Sbjct: 424 IGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLRHLRVFSVDP 483

Query: 362 PGCMDTDDALHCISLPNGNFEVGVYIADVTNFVYPGTPLDDEASQRGTSV-LAYSLLVML 538
           PGC D DDALHC  LPNGNFEVGV+IADVTNFVYPGTPLDDEA+QRGTSV L    + ML
Sbjct: 484 PGCKDIDDALHCHVLPNGNFEVGVHIADVTNFVYPGTPLDDEAAQRGTSVYLVERRIDML 543

Query: 539 P 541
           P
Sbjct: 544 P 544


>ref|XP_002276939.1| PREDICTED: exosome complex exonuclease RRP44 isoform 2 [Vitis
           vinifera] gi|296082564|emb|CBI21569.3| unnamed protein
           product [Vitis vinifera]
          Length = 937

 Score =  293 bits (751), Expect = 5e-77
 Identities = 147/181 (81%), Positives = 162/181 (89%), Gaps = 1/181 (0%)
 Frame = +2

Query: 2   AGNGGIAYALFVSKDRRIPKIRIQTRQLGNLLDERIVVAVDTWNRLSRYPSGHYVKTIGE 181
           AGNGGIA+ALFVSKDRRIPKIRIQTRQLGNLLD+RI+VAVD+W+ LSRYPSGHYV+TIGE
Sbjct: 365 AGNGGIAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCLSRYPSGHYVRTIGE 424

Query: 182 ISDKDTESEVVLIENDINS*PFSAQVLACLPPIPGSVSSENLMNPIRQDLRDLRVFSVDP 361
           I D+DTESEVVLIENDINS PFS QVLACLPP+P SVSSE+L NP R DLR + VFSVDP
Sbjct: 425 IGDRDTESEVVLIENDINSRPFSLQVLACLPPLPWSVSSEDLANPCRLDLRHVCVFSVDP 484

Query: 362 PGCMDTDDALHCISLPNGNFEVGVYIADVTNFVYPGTPLDDEASQRGTSV-LAYSLLVML 538
           PGC D DDALHC +LPNGNFEVGV+IADVTNFV+PGTPLDDEA+QRGTSV L    + ML
Sbjct: 485 PGCKDIDDALHCTTLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDML 544

Query: 539 P 541
           P
Sbjct: 545 P 545


>ref|XP_003629102.1| Exosome complex exonuclease [Medicago truncatula]
            gi|355523124|gb|AET03578.1| Exosome complex exonuclease
            [Medicago truncatula]
          Length = 1045

 Score =  290 bits (742), Expect = 6e-76
 Identities = 143/180 (79%), Positives = 161/180 (89%), Gaps = 1/180 (0%)
 Frame = +2

Query: 5    GNGGIAYALFVSKDRRIPKIRIQTRQLGNLLDERIVVAVDTWNRLSRYPSGHYVKTIGEI 184
            G+ G+AYALFVSKDRR PKIRIQTRQL NLLD+RI+V+VD+W+R SRYPSGHYV+T+G+I
Sbjct: 476  GSRGVAYALFVSKDRRFPKIRIQTRQLENLLDKRIIVSVDSWDRQSRYPSGHYVRTVGKI 535

Query: 185  SDKDTESEVVLIENDINS*PFSAQVLACLPPIPGSVSSENLMNPIRQDLRDLRVFSVDPP 364
             DKDTE+EVVLIENDINS PFSAQVLACLPP+P SVSSE+L  P RQDLR LRVFSVDPP
Sbjct: 536  GDKDTETEVVLIENDINSRPFSAQVLACLPPLPWSVSSEDLSIPFRQDLRHLRVFSVDPP 595

Query: 365  GCMDTDDALHCISLPNGNFEVGVYIADVTNFVYPGTPLDDEASQRGTSV-LAYSLLVMLP 541
            GC D DDALHCI+LPNGNF+VGV+IADVTNFV+PGTPLDDEASQRGTSV L    + MLP
Sbjct: 596  GCKDIDDALHCIALPNGNFDVGVHIADVTNFVFPGTPLDDEASQRGTSVYLVEKRIDMLP 655


>ref|XP_004169783.1| PREDICTED: exosome complex exonuclease RRP44-like, partial [Cucumis
           sativus]
          Length = 732

 Score =  286 bits (731), Expect = 1e-74
 Identities = 142/181 (78%), Positives = 160/181 (88%), Gaps = 1/181 (0%)
 Frame = +2

Query: 2   AGNGGIAYALFVSKDRRIPKIRIQTRQLGNLLDERIVVAVDTWNRLSRYPSGHYVKTIGE 181
           AG+GGIAYALFVSKDRRIPKIRIQTRQL NLLD+RI+VAVD+W+RLSRYPSGHYV++IGE
Sbjct: 364 AGSGGIAYALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRLSRYPSGHYVRSIGE 423

Query: 182 ISDKDTESEVVLIENDINS*PFSAQVLACLPPIPGSVSSENLMNPIRQDLRDLRVFSVDP 361
           I D+DTESEVVLIENDINS PFS+QV+ CLPP+P SVS  ++ NPIRQDLR L VFSVDP
Sbjct: 424 IGDRDTESEVVLIENDINSRPFSSQVMTCLPPLPWSVSPVDIANPIRQDLRHLNVFSVDP 483

Query: 362 PGCMDTDDALHCISLPNGNFEVGVYIADVTNFVYPGTPLDDEASQRGTSV-LAYSLLVML 538
           PGC D DDALHC +L NGNFEVGV+IADVTNFV+PGT LDDEA+QRGTSV L    + ML
Sbjct: 484 PGCKDIDDALHCTALSNGNFEVGVHIADVTNFVHPGTALDDEAAQRGTSVYLVERRIDML 543

Query: 539 P 541
           P
Sbjct: 544 P 544


>ref|XP_004136994.1| PREDICTED: exosome complex exonuclease RRP44-like [Cucumis sativus]
          Length = 934

 Score =  286 bits (731), Expect = 1e-74
 Identities = 142/181 (78%), Positives = 160/181 (88%), Gaps = 1/181 (0%)
 Frame = +2

Query: 2   AGNGGIAYALFVSKDRRIPKIRIQTRQLGNLLDERIVVAVDTWNRLSRYPSGHYVKTIGE 181
           AG+GGIAYALFVSKDRRIPKIRIQTRQL NLLD+RI+VAVD+W+RLSRYPSGHYV++IGE
Sbjct: 364 AGSGGIAYALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRLSRYPSGHYVRSIGE 423

Query: 182 ISDKDTESEVVLIENDINS*PFSAQVLACLPPIPGSVSSENLMNPIRQDLRDLRVFSVDP 361
           I D+DTESEVVLIENDINS PFS+QV+ CLPP+P SVS  ++ NPIRQDLR L VFSVDP
Sbjct: 424 IGDRDTESEVVLIENDINSRPFSSQVMTCLPPLPWSVSPVDIANPIRQDLRHLNVFSVDP 483

Query: 362 PGCMDTDDALHCISLPNGNFEVGVYIADVTNFVYPGTPLDDEASQRGTSV-LAYSLLVML 538
           PGC D DDALHC +L NGNFEVGV+IADVTNFV+PGT LDDEA+QRGTSV L    + ML
Sbjct: 484 PGCKDIDDALHCTALSNGNFEVGVHIADVTNFVHPGTALDDEAAQRGTSVYLVERRIDML 543

Query: 539 P 541
           P
Sbjct: 544 P 544