BLASTX nr result
ID: Coptis21_contig00002247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00002247
(4206 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 2267 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2231 0.0
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2225 0.0
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 2209 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2208 0.0
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 2267 bits (5874), Expect = 0.0
Identities = 1125/1173 (95%), Positives = 1143/1173 (97%)
Frame = -3
Query: 4018 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSD 3839
ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPGRQSD
Sbjct: 22 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSD 81
Query: 3838 FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 3659
FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+++KKGHD
Sbjct: 82 FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHD 141
Query: 3658 CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 3479
EEVTE E KVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 142 LEEVTETQE-FTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKV 200
Query: 3478 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 3299
LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ
Sbjct: 201 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 260
Query: 3298 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 3119
YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQ
Sbjct: 261 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQ 320
Query: 3118 LVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 2939
VALDYIGKRGSTVGVT+EKRIKYAKEILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 321 QVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 380
Query: 2938 CAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFA 2759
CA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY QKCVDNGKDVNLQFA
Sbjct: 381 CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 440
Query: 2758 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 2579
IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 441 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 500
Query: 2578 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 2399
AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE
Sbjct: 501 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 560
Query: 2398 ISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 2219
ISPAVIPQ+TKIFVNGCWVGIHRNP+LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT
Sbjct: 561 ISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 620
Query: 2218 DYGRCSRPLFIVEKQRLLIKKKDIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXTMI 2039
DYGRCSRPLFIVEKQRLLIKK+DI ALQ RES E+GGWH+LV KG+IEYVD TMI
Sbjct: 621 DYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMI 680
Query: 2038 SMTINDLVQARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 1859
SMTINDL+ ARL PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 681 SMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 740
Query: 1858 AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 1679
AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 741 AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 800
Query: 1678 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD 1499
DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD
Sbjct: 801 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD 860
Query: 1498 GLAPPGTRVSGEDVIIGKTTPIAPDESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNA 1319
GLAPPGTRVSGEDVIIGKTTPI+ D+S G ASRYTRRDHSTSLRHSESGMVDQVLLTTNA
Sbjct: 861 GLAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNA 920
Query: 1318 DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 1139
DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 921 DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 980
Query: 1138 SRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 959
SRMTIGQLIECIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 981 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1040
Query: 958 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 779
RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1041 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1100
Query: 778 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 599
IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA
Sbjct: 1101 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1160
Query: 598 CKLLFQELMAMAIAPRMLTKEIKPSKDNKKKAS 500
CKLLFQELMAMAIAPRMLTKE+KP KD KKK +
Sbjct: 1161 CKLLFQELMAMAIAPRMLTKEVKPPKDQKKKGA 1193
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2231 bits (5782), Expect = 0.0
Identities = 1104/1173 (94%), Positives = 1138/1173 (97%)
Frame = -3
Query: 4018 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSD 3839
ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSD
Sbjct: 23 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82
Query: 3838 FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 3659
F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V+KKGHD
Sbjct: 83 FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
Query: 3658 CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 3479
EEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 143 GEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
Query: 3478 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 3299
LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQ
Sbjct: 202 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
Query: 3298 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 3119
YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQ
Sbjct: 262 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQ 321
Query: 3118 LVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 2939
VALDYIGKRG+TVGVTKEKRIKYAKEILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 322 QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381
Query: 2938 CAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFA 2759
CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+Y QKCVDNGKDVNLQFA
Sbjct: 382 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFA 441
Query: 2758 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 2579
IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 442 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
Query: 2578 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 2399
AKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEE
Sbjct: 502 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
Query: 2398 ISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 2219
ISPAVIPQATKIFVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YT
Sbjct: 562 ISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
Query: 2218 DYGRCSRPLFIVEKQRLLIKKKDIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXTMI 2039
DYGRCSRPLFIVEKQRLLIKKKDI ALQQRES+EEGGWH+LV KG+IEY+D TMI
Sbjct: 622 DYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMI 681
Query: 2038 SMTINDLVQARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 1859
SMTI+DLVQAR+ PEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 682 SMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
Query: 1858 AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 1679
AMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 742 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
Query: 1678 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD 1499
DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDD
Sbjct: 802 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 861
Query: 1498 GLAPPGTRVSGEDVIIGKTTPIAPDESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNA 1319
GLAPPGTRVSGEDVIIGKTTPIA +E+ G ++RYTRRDHS SLRHSE+G+VDQVLLTTNA
Sbjct: 862 GLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNA 921
Query: 1318 DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 1139
DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 922 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
Query: 1138 SRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 959
SRMTIGQLIECIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
Query: 958 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 779
RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
Query: 778 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 599
IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
Query: 598 CKLLFQELMAMAIAPRMLTKEIKPSKDNKKKAS 500
CKLLFQELMAMAIAPRMLTK++KP+KD KKK +
Sbjct: 1162 CKLLFQELMAMAIAPRMLTKDVKPTKDQKKKGA 1194
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 2225 bits (5765), Expect = 0.0
Identities = 1098/1171 (93%), Positives = 1134/1171 (96%)
Frame = -3
Query: 4018 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSD 3839
ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSD
Sbjct: 20 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79
Query: 3838 FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 3659
F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V+KKGHD
Sbjct: 80 FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139
Query: 3658 CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 3479
EEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 140 GEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 198
Query: 3478 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 3299
LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQ
Sbjct: 199 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 258
Query: 3298 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 3119
YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+D QMMELLRPSLEEAFVIQNQ
Sbjct: 259 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQ 318
Query: 3118 LVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 2939
VALDYIGKRG+TVGVTKEKRIKYAKEILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 319 QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 378
Query: 2938 CAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFA 2759
CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFA
Sbjct: 379 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 438
Query: 2758 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 2579
IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 439 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498
Query: 2578 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 2399
AKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEE
Sbjct: 499 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 558
Query: 2398 ISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 2219
ISPAVIPQATKIFVNGCWVGIHR+P++LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+YT
Sbjct: 559 ISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 618
Query: 2218 DYGRCSRPLFIVEKQRLLIKKKDIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXTMI 2039
DYGRCSRPLFIVEKQRLLIK+KDI ALQQRE+ E+GGWH+LV KG+IEY+D TMI
Sbjct: 619 DYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMI 678
Query: 2038 SMTINDLVQARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 1859
SMTINDLV ARL PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 679 SMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 738
Query: 1858 AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 1679
AMGIYVTNYQ RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 739 AMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 798
Query: 1678 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD 1499
DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDD
Sbjct: 799 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 858
Query: 1498 GLAPPGTRVSGEDVIIGKTTPIAPDESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNA 1319
GLAPPGTRVSGEDV+IGKTTPIA DE+ G A+RYTRRDHSTSLRHSE+GMVDQVLLTTNA
Sbjct: 859 GLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNA 918
Query: 1318 DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 1139
DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIP
Sbjct: 919 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIP 978
Query: 1138 SRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 959
SRMTIGQLIECIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 979 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1038
Query: 958 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 779
RRLT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1039 RRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098
Query: 778 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 599
IAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1158
Query: 598 CKLLFQELMAMAIAPRMLTKEIKPSKDNKKK 506
CKLLFQELM+MAIAPRMLTK++K +KD KKK
Sbjct: 1159 CKLLFQELMSMAIAPRMLTKDVKQAKDKKKK 1189
>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 2209 bits (5723), Expect = 0.0
Identities = 1094/1173 (93%), Positives = 1130/1173 (96%)
Frame = -3
Query: 4018 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSD 3839
ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSD
Sbjct: 28 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 87
Query: 3838 FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 3659
ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K+V+KKGHD
Sbjct: 88 VAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 147
Query: 3658 CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 3479
EEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 148 GEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 206
Query: 3478 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 3299
LIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQ
Sbjct: 207 LIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 266
Query: 3298 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 3119
YIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQ
Sbjct: 267 YIRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQ 326
Query: 3118 LVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 2939
VALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGE+ ETKKAYYFGYIIHRLLL
Sbjct: 327 QVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLL 386
Query: 2938 CAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFA 2759
CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFA
Sbjct: 387 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 446
Query: 2758 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 2579
IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 447 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 506
Query: 2578 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 2399
AKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEE
Sbjct: 507 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 566
Query: 2398 ISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 2219
ISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YT
Sbjct: 567 ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 626
Query: 2218 DYGRCSRPLFIVEKQRLLIKKKDIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXTMI 2039
DYGRCSRPLFIVEKQRLLIKKKDI ALQQRES E+GGWH+LV KG+IEY+D TMI
Sbjct: 627 DYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 686
Query: 2038 SMTINDLVQARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 1859
SMTI+DL+QAR+ P EAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 687 SMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 746
Query: 1858 AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 1679
AMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 747 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 806
Query: 1678 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD 1499
DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDD
Sbjct: 807 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 866
Query: 1498 GLAPPGTRVSGEDVIIGKTTPIAPDESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNA 1319
GLAPPGTRVSGEDVIIGKTTPI+ +E+ G A+RY+RRDHS SLRHSE+G+VDQVLLTTNA
Sbjct: 867 GLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNA 926
Query: 1318 DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 1139
DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 927 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 986
Query: 1138 SRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 959
SRMTIGQLIECIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 987 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1046
Query: 958 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 779
RRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1047 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1106
Query: 778 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 599
IAHGAAHFLKERLFDQSDAYR+HVCE CGLIAIANLKK+SFECRGCKNKTDIVQV+IPYA
Sbjct: 1107 IAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYA 1166
Query: 598 CKLLFQELMAMAIAPRMLTKEIKPSKDNKKKAS 500
CKLLFQELMAMAIAPRM TKEIKP KD KKK S
Sbjct: 1167 CKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 2208 bits (5722), Expect = 0.0
Identities = 1091/1173 (93%), Positives = 1132/1173 (96%)
Frame = -3
Query: 4018 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVIRPESQHNPGRQSD 3839
ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG QSD
Sbjct: 20 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79
Query: 3838 FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 3659
F ETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V+KKGHD
Sbjct: 80 FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139
Query: 3658 CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 3479
EEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKV
Sbjct: 140 GEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKV 198
Query: 3478 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 3299
LIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA++QNRPPS+MFVRMLSRTSAKGGSSGQ
Sbjct: 199 LIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQ 258
Query: 3298 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 3119
YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+D QMMELLRPSLEEAFVIQNQ
Sbjct: 259 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQ 318
Query: 3118 LVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 2939
VALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 319 QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 378
Query: 2938 CAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQKCVDNGKDVNLQFA 2759
CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QKCVDNGKDVNLQFA
Sbjct: 379 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 438
Query: 2758 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 2579
IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 439 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498
Query: 2578 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 2399
AKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEE
Sbjct: 499 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 558
Query: 2398 ISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 2219
ISPAVIPQATKIFVNG WVGIHR+P++LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+YT
Sbjct: 559 ISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 618
Query: 2218 DYGRCSRPLFIVEKQRLLIKKKDIMALQQRESAEEGGWHELVEKGYIEYVDXXXXXXTMI 2039
DYGRCSRPLFIVEKQRL+IKKKDI LQQRES +EGGWH+LV KGYIEY+D TMI
Sbjct: 619 DYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMI 678
Query: 2038 SMTINDLVQARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 1859
SMTINDLVQARL P +AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 679 SMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 738
Query: 1858 AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 1679
AMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQE
Sbjct: 739 AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQE 798
Query: 1678 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD 1499
DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDD
Sbjct: 799 DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDD 858
Query: 1498 GLAPPGTRVSGEDVIIGKTTPIAPDESSGVASRYTRRDHSTSLRHSESGMVDQVLLTTNA 1319
GLAPPGTRVSGEDVIIGKTTPI+ D++ G ASRYTR+DHSTSLRHSE+GMVDQVLLTTNA
Sbjct: 859 GLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNA 918
Query: 1318 DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 1139
DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 919 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 978
Query: 1138 SRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 959
SRMTIGQLIECIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 979 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1038
Query: 958 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 779
RRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1039 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098
Query: 778 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 599
IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1158
Query: 598 CKLLFQELMAMAIAPRMLTKEIKPSKDNKKKAS 500
CKLLFQELMAMAIAPRMLTK++K +KD KKK +
Sbjct: 1159 CKLLFQELMAMAIAPRMLTKDVKLAKDQKKKGA 1191