BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002209
         (1666 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276985.1| PREDICTED: DDB1- and CUL4-associated factor ...   757   0.0  
ref|XP_002517863.1| U3 small nucleolar RNA (U3 snorna) associate...   742   0.0  
ref|XP_002327907.1| predicted protein [Populus trichocarpa] gi|2...   739   0.0  
ref|XP_002310410.1| predicted protein [Populus trichocarpa] gi|2...   733   0.0  
ref|XP_004144522.1| PREDICTED: DDB1- and CUL4-associated factor ...   728   0.0  

>ref|XP_002276985.1| PREDICTED: DDB1- and CUL4-associated factor 13 [Vitis vinifera]
            gi|302143337|emb|CBI21898.3| unnamed protein product
            [Vitis vinifera]
          Length = 452

 Score =  757 bits (1954), Expect = 0.0
 Identities = 360/462 (77%), Positives = 409/462 (88%), Gaps = 1/462 (0%)
 Frame = +2

Query: 17   MRVKTISRSNDDFTRERSQDLLKVFRNYDPNLRTQEKAVEYVRALKAAKLEKIFARPFVG 196
            M+VK ISRS D+FTRERSQDL +VFRN+DPNLR QEKAVEYVRAL AAKL+K+FARPF+G
Sbjct: 1    MKVKVISRSTDEFTRERSQDLQRVFRNFDPNLRKQEKAVEYVRALNAAKLDKVFARPFIG 60

Query: 197  AMEGHIEGITCMAKNPNHLKGIFSGSVDGDIRLWDLATRRTVCQFPGRKGAAQGREFDGH 376
            AM+GHI+ I+CMAKNPN+LKGIFSGS+DGDIRLWD+A+RRTVCQFPG +GA         
Sbjct: 61   AMDGHIDSISCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGA--------- 111

Query: 377  QREVMGLTCSTDGRILVSCGVDCTVRLWRVPVAGIMESDDSFGSS-QPLAVYVWKNSFWG 553
               V GLT STDGRILVSCG DCTVRLW VPVA I +SDDS  +S +PLAV+VWKN+FWG
Sbjct: 112  ---VRGLTASTDGRILVSCGTDCTVRLWNVPVATISDSDDSSDNSMKPLAVHVWKNAFWG 168

Query: 554  VDHQWDGDRFATAGAQVDIWDHNRSEPVSTFQWGNDTFTSVRFNPGEPNLLATSDRERNI 733
            VDHQWDG+ FATAGAQVDIWDHNRS+PV+TFQWGND+  +VRFNPGEP++LA S  +R++
Sbjct: 169  VDHQWDGNLFATAGAQVDIWDHNRSQPVNTFQWGNDSVIAVRFNPGEPDILAASASDRSL 228

Query: 734  TLYDLRLSSPVTRLKMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKGH 913
             LYDLR+SSP  +L M+TKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHK H
Sbjct: 229  ILYDLRMSSPARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKDH 288

Query: 914  VNAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFSVKFSCDGTYVL 1093
            V+AVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVF VKF+CD +YV+
Sbjct: 289  VSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFTCDASYVI 348

Query: 1094 SGSDDTNLRLWKAQASEQLGVVLPRERKKHEYDEAIKNRYKHLPEVKRIVRHKHLPKPIY 1273
            SGSDDTNLRLWKA+ASEQLGV+LPRERKKHEY EA+KNRYKHLPEVKRIVRH+HLPKPI+
Sbjct: 349  SGSDDTNLRLWKAKASEQLGVLLPRERKKHEYHEAVKNRYKHLPEVKRIVRHRHLPKPIF 408

Query: 1274 NASKLSRQKIDKERRKDANRRAHSAPGSMPTETVRKRRIIKE 1399
             A+ L R   + ERRK+  R+AHSAPGS+ TE +RKRRII+E
Sbjct: 409  KAAALRRTMTEAERRKEEKRKAHSAPGSISTEPLRKRRIIQE 450


>ref|XP_002517863.1| U3 small nucleolar RNA (U3 snorna) associated protein, putative
            [Ricinus communis] gi|223542845|gb|EEF44381.1| U3 small
            nucleolar RNA (U3 snorna) associated protein, putative
            [Ricinus communis]
          Length = 452

 Score =  742 bits (1916), Expect = 0.0
 Identities = 350/462 (75%), Positives = 408/462 (88%), Gaps = 1/462 (0%)
 Frame = +2

Query: 17   MRVKTISRSNDDFTRERSQDLLKVFRNYDPNLRTQEKAVEYVRALKAAKLEKIFARPFVG 196
            M+VK ISRS+DDFTRERSQDL +VFRN+DP+LRTQEK++EYVRAL AAKL+KIFARPF+G
Sbjct: 1    MKVKVISRSSDDFTRERSQDLQRVFRNFDPSLRTQEKSIEYVRALNAAKLDKIFARPFIG 60

Query: 197  AMEGHIEGITCMAKNPNHLKGIFSGSVDGDIRLWDLATRRTVCQFPGRKGAAQGREFDGH 376
            AM+GHI+ I+CMAKNPN+LKGIFSGS+DGDIRLWD+A+RRTVCQFPG +GA         
Sbjct: 61   AMDGHIDAISCMAKNPNYLKGIFSGSMDGDIRLWDIASRRTVCQFPGHQGA--------- 111

Query: 377  QREVMGLTCSTDGRILVSCGVDCTVRLWRVPVAGIMESDD-SFGSSQPLAVYVWKNSFWG 553
               V GLT STDG IL+SCG DCT RLW+VPVA +MESD  S  S++P A+YV KN+FWG
Sbjct: 112  ---VRGLTASTDGCILISCGTDCTARLWKVPVATMMESDGPSNRSAEPQAIYVGKNAFWG 168

Query: 554  VDHQWDGDRFATAGAQVDIWDHNRSEPVSTFQWGNDTFTSVRFNPGEPNLLATSDRERNI 733
            VDHQWDG+ FAT GAQVDIW+HNRS+PV++F+WG DT  SVRFNPGEPNLLA S  +R+I
Sbjct: 169  VDHQWDGELFATGGAQVDIWNHNRSQPVNSFEWGTDTVISVRFNPGEPNLLAASASDRSI 228

Query: 734  TLYDLRLSSPVTRLKMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKGH 913
            TLYDLR+SSP  +L M+T+TNSI+WNPMEPMNFTAANEDCNCYS+DARKLDEAKCVHK H
Sbjct: 229  TLYDLRVSSPARKLIMRTRTNSIAWNPMEPMNFTAANEDCNCYSFDARKLDEAKCVHKDH 288

Query: 914  VNAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFSVKFSCDGTYVL 1093
            V+AVMDID+SPTGREFVTGSYDRTVRIF YNGGHSREIYHTKRMQRVF VKFSCDG+Y++
Sbjct: 289  VSAVMDIDFSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDGSYII 348

Query: 1094 SGSDDTNLRLWKAQASEQLGVVLPRERKKHEYDEAIKNRYKHLPEVKRIVRHKHLPKPIY 1273
            SGSDDTNLRLWKA+ASEQLGV+LPRERK+HEY+EA+KNRYKHLPE+KRIVRH+HLPKPIY
Sbjct: 349  SGSDDTNLRLWKAKASEQLGVLLPRERKRHEYNEAVKNRYKHLPEIKRIVRHRHLPKPIY 408

Query: 1274 NASKLSRQKIDKERRKDANRRAHSAPGSMPTETVRKRRIIKE 1399
             A+++ R   + E+RK+  RRAHS PGS+ TE +RKRRIIKE
Sbjct: 409  KAAEIRRTVTEAEKRKEDRRRAHSTPGSVVTEPLRKRRIIKE 450


>ref|XP_002327907.1| predicted protein [Populus trichocarpa] gi|222837316|gb|EEE75695.1|
            predicted protein [Populus trichocarpa]
          Length = 452

 Score =  739 bits (1907), Expect = 0.0
 Identities = 355/462 (76%), Positives = 403/462 (87%), Gaps = 1/462 (0%)
 Frame = +2

Query: 17   MRVKTISRSNDDFTRERSQDLLKVFRNYDPNLRTQEKAVEYVRALKAAKLEKIFARPFVG 196
            M+VK ISRS D+FTRERSQDL +VF N+DPNLRTQEKAVEY RAL AAKL+KIFARPF+G
Sbjct: 1    MKVKVISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIG 60

Query: 197  AMEGHIEGITCMAKNPNHLKGIFSGSVDGDIRLWDLATRRTVCQFPGRKGAAQGREFDGH 376
            AM+GHI+ ++CMAKNPN+LKGIFSGS+DGDIRLWD+A RRTVCQFPG +GA         
Sbjct: 61   AMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRRTVCQFPGHQGA--------- 111

Query: 377  QREVMGLTCSTDGRILVSCGVDCTVRLWRVPVAGIMESDD-SFGSSQPLAVYVWKNSFWG 553
               V GLT STDG  LVSCG DCTVRLW VPVA IM+SD+ S  SS+P AVY+ +N+FW 
Sbjct: 112  ---VRGLTASTDGSTLVSCGTDCTVRLWNVPVATIMDSDNLSDCSSEPRAVYMGENAFWA 168

Query: 554  VDHQWDGDRFATAGAQVDIWDHNRSEPVSTFQWGNDTFTSVRFNPGEPNLLATSDRERNI 733
            VDHQW+GD FATAGAQVDIW+HNRS+PV++F+WG D+  SVRFNPGEPNLL TS  +R+I
Sbjct: 169  VDHQWNGDLFATAGAQVDIWNHNRSQPVNSFKWGTDSVISVRFNPGEPNLLVTSASDRSI 228

Query: 734  TLYDLRLSSPVTRLKMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKGH 913
             LYDLR+SSP  +L M+TKTNSISWNPMEPMNFTAANEDCNCYSYDARKL+EAKCVHK H
Sbjct: 229  ILYDLRVSSPARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDH 288

Query: 914  VNAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFSVKFSCDGTYVL 1093
            V+AVMDID+SPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVF VKFSCD +YV+
Sbjct: 289  VSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVI 348

Query: 1094 SGSDDTNLRLWKAQASEQLGVVLPRERKKHEYDEAIKNRYKHLPEVKRIVRHKHLPKPIY 1273
            SGSDDTNLRLWKA+ASEQLGV+LPRE+K+HEY+EA+KNRYKHLPEVKRIVRH+HLPKPIY
Sbjct: 349  SGSDDTNLRLWKAKASEQLGVLLPREQKRHEYNEALKNRYKHLPEVKRIVRHRHLPKPIY 408

Query: 1274 NASKLSRQKIDKERRKDANRRAHSAPGSMPTETVRKRRIIKE 1399
             A  L R  I+ ERRKD  R+AHSAPGS+ TE +RKRRIIKE
Sbjct: 409  KAGVLRRVMIEAERRKDQRRKAHSAPGSIVTEPMRKRRIIKE 450


>ref|XP_002310410.1| predicted protein [Populus trichocarpa] gi|222853313|gb|EEE90860.1|
            predicted protein [Populus trichocarpa]
          Length = 452

 Score =  733 bits (1891), Expect = 0.0
 Identities = 351/462 (75%), Positives = 400/462 (86%), Gaps = 1/462 (0%)
 Frame = +2

Query: 17   MRVKTISRSNDDFTRERSQDLLKVFRNYDPNLRTQEKAVEYVRALKAAKLEKIFARPFVG 196
            M+VK ISRS D+FTRERSQDL +VF N+DPNLRTQEKAVEY RAL AAKL+KIFARPF+G
Sbjct: 1    MKVKVISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIG 60

Query: 197  AMEGHIEGITCMAKNPNHLKGIFSGSVDGDIRLWDLATRRTVCQFPGRKGAAQGREFDGH 376
            AM+GHI+ ++CMAKNPN+LKGIFSGS+DGDIRLWD+A RRTVC+FPG +GA         
Sbjct: 61   AMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRRTVCRFPGHQGA--------- 111

Query: 377  QREVMGLTCSTDGRILVSCGVDCTVRLWRVPVAGIMESDDSFG-SSQPLAVYVWKNSFWG 553
               V GLT STDG  LVSCG DCTVRLW VPVA IMES +S   SS+P AVY+ +N++W 
Sbjct: 112  ---VRGLTASTDGSTLVSCGTDCTVRLWNVPVATIMESGNSSDCSSEPRAVYMGENAYWA 168

Query: 554  VDHQWDGDRFATAGAQVDIWDHNRSEPVSTFQWGNDTFTSVRFNPGEPNLLATSDRERNI 733
            VDHQW GD FATAGAQVDIW+HNRS+PV++F+WG D+  SVRFNPGEPNLLATS  +R+I
Sbjct: 169  VDHQWSGDLFATAGAQVDIWNHNRSQPVNSFKWGTDSVISVRFNPGEPNLLATSASDRSI 228

Query: 734  TLYDLRLSSPVTRLKMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKGH 913
             LYDLR+SSP  +L M+TKTNSISWNPMEPMNFTAANEDCNCYSYDARK DEAKCVHK H
Sbjct: 229  MLYDLRVSSPARKLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKFDEAKCVHKDH 288

Query: 914  VNAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFSVKFSCDGTYVL 1093
            V+AVMDID+SPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVF VKFSCD +YV+
Sbjct: 289  VSAVMDIDFSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVI 348

Query: 1094 SGSDDTNLRLWKAQASEQLGVVLPRERKKHEYDEAIKNRYKHLPEVKRIVRHKHLPKPIY 1273
            SGSDDTNLRLWKA+ASEQLG++LPRE+++HEY+EA+K RYKHLPEVKRIVRH+HLPKPIY
Sbjct: 349  SGSDDTNLRLWKAKASEQLGILLPREQRRHEYNEALKTRYKHLPEVKRIVRHRHLPKPIY 408

Query: 1274 NASKLSRQKIDKERRKDANRRAHSAPGSMPTETVRKRRIIKE 1399
             A  L R  I+ ERRKD  R+AHSAPGS+ TE +RKRRIIKE
Sbjct: 409  KAGVLRRVMIEAERRKDHRRKAHSAPGSIVTEPMRKRRIIKE 450


>ref|XP_004144522.1| PREDICTED: DDB1- and CUL4-associated factor 13-like [Cucumis sativus]
          Length = 451

 Score =  728 bits (1878), Expect = 0.0
 Identities = 339/461 (73%), Positives = 399/461 (86%)
 Frame = +2

Query: 17   MRVKTISRSNDDFTRERSQDLLKVFRNYDPNLRTQEKAVEYVRALKAAKLEKIFARPFVG 196
            M+VK ISRS D+FTRERS DL +VFRN+DP+LRTQEKAVEYVRA+ AAKL+K+FA+PF+G
Sbjct: 1    MKVKVISRSTDEFTRERSHDLQRVFRNFDPSLRTQEKAVEYVRAVNAAKLDKMFAKPFIG 60

Query: 197  AMEGHIEGITCMAKNPNHLKGIFSGSVDGDIRLWDLATRRTVCQFPGRKGAAQGREFDGH 376
            AM+GH++ ++CMAKNPNHLKGIFSGS+DGDIRLWD+A RRTV QFPG +GA         
Sbjct: 61   AMDGHMDSVSCMAKNPNHLKGIFSGSMDGDIRLWDIANRRTVYQFPGHQGA--------- 111

Query: 377  QREVMGLTCSTDGRILVSCGVDCTVRLWRVPVAGIMESDDSFGSSQPLAVYVWKNSFWGV 556
               V GLT STDGRIL+SCG DCTVRLW VPV  +   + S  SS+PLAVYVWKN+FW +
Sbjct: 112  ---VRGLTASTDGRILISCGTDCTVRLWNVPVPTLNSYETSNNSSEPLAVYVWKNAFWAI 168

Query: 557  DHQWDGDRFATAGAQVDIWDHNRSEPVSTFQWGNDTFTSVRFNPGEPNLLATSDRERNIT 736
            DHQWDG+ FATAGAQ+DIWDHNRS+PVS+++WG D+  SVRFNPGEPN+LATS  +R+I 
Sbjct: 169  DHQWDGNLFATAGAQLDIWDHNRSQPVSSYEWGTDSVISVRFNPGEPNVLATSASDRSIA 228

Query: 737  LYDLRLSSPVTRLKMKTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKGHV 916
            LYDLR+SSP  ++ M+TKTNSI WNP EPMNFTAANEDCNCYSYD+RKLDEAKCVH+ HV
Sbjct: 229  LYDLRMSSPARKVIMRTKTNSICWNPREPMNFTAANEDCNCYSYDSRKLDEAKCVHRDHV 288

Query: 917  NAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFSVKFSCDGTYVLS 1096
            +AVMDID+SP+GREFVTGSYDRT+RIF YNGGHSREIYHTKRMQRVF V+FSCD +YV+S
Sbjct: 289  SAVMDIDFSPSGREFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVRFSCDASYVIS 348

Query: 1097 GSDDTNLRLWKAQASEQLGVVLPRERKKHEYDEAIKNRYKHLPEVKRIVRHKHLPKPIYN 1276
            GSDDTNLRLWKA+ASEQLGV+LPRE++KHEY EA+KNRYKHLPEVKRIVRH+HLPKPI+ 
Sbjct: 349  GSDDTNLRLWKAKASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHRHLPKPIFK 408

Query: 1277 ASKLSRQKIDKERRKDANRRAHSAPGSMPTETVRKRRIIKE 1399
            A+ L R  ID ERRK+  R+AHSAPGS+ T  +R+RRIIKE
Sbjct: 409  AAALRRTIIDAERRKEERRKAHSAPGSISTVPLRRRRIIKE 449