BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002208
         (680 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis...   206   3e-51
ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis...   206   3e-51
ref|XP_002514061.1| 40S ribosomal protein S3, putative [Ricinus ...   203   2e-50
ref|XP_002445113.1| hypothetical protein SORBIDRAFT_07g004290 [S...   203   3e-50
gb|ABK95963.1| unknown [Populus trichocarpa]                          203   3e-50

>ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
           gi|297743020|emb|CBI35887.3| unnamed protein product
           [Vitis vinifera]
          Length = 234

 Score =  206 bits (525), Expect = 3e-51
 Identities = 102/116 (87%), Positives = 108/116 (93%), Gaps = 1/116 (0%)
 Frame = +1

Query: 1   CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNEYIDSAVRHVLLR 180
           CYGVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV EYIDSAVRHVLLR
Sbjct: 119 CYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLR 178

Query: 181 QGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPK-DEEYVRPALMATEIDVAAA 345
           QGVLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK +EEY+RP + A +I+VAAA
Sbjct: 179 QGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEVAAA 234


>ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
           gi|297738588|emb|CBI27833.3| unnamed protein product
           [Vitis vinifera]
          Length = 234

 Score =  206 bits (524), Expect = 3e-51
 Identities = 102/116 (87%), Positives = 107/116 (92%), Gaps = 1/116 (0%)
 Frame = +1

Query: 1   CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNEYIDSAVRHVLLR 180
           CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV EYIDSAVRHVLLR
Sbjct: 119 CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLR 178

Query: 181 QGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPK-DEEYVRPALMATEIDVAAA 345
           QGVLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK +EEY+RP  +AT+I+V  A
Sbjct: 179 QGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYIRPEKLATDIEVPTA 234


>ref|XP_002514061.1| 40S ribosomal protein S3, putative [Ricinus communis]
           gi|223546517|gb|EEF48015.1| 40S ribosomal protein S3,
           putative [Ricinus communis]
          Length = 233

 Score =  203 bits (517), Expect = 2e-50
 Identities = 100/115 (86%), Positives = 107/115 (93%)
 Frame = +1

Query: 1   CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNEYIDSAVRHVLLR 180
           CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV +YIDSAVRHVLLR
Sbjct: 120 CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLR 179

Query: 181 QGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKDEEYVRPALMATEIDVAAA 345
           QGVLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK+EE +RP ++ATE++V  A
Sbjct: 180 QGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHSPKEEE-LRPPVLATEVEVPVA 233


>ref|XP_002445113.1| hypothetical protein SORBIDRAFT_07g004290 [Sorghum bicolor]
           gi|241941463|gb|EES14608.1| hypothetical protein
           SORBIDRAFT_07g004290 [Sorghum bicolor]
          Length = 228

 Score =  203 bits (516), Expect = 3e-50
 Identities = 97/110 (88%), Positives = 104/110 (94%)
 Frame = +1

Query: 1   CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNEYIDSAVRHVLLR 180
           CYGVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PVNEYIDSAVRHVLLR
Sbjct: 119 CYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 178

Query: 181 QGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKDEEYVRPALMATEI 330
           QGVLGIKVKIMLDWDPKGK GP+TPLPDLVTIH PKDE+ +RP ++A E+
Sbjct: 179 QGVLGIKVKIMLDWDPKGKVGPITPLPDLVTIHTPKDEDELRPPVLAPEV 228


>gb|ABK95963.1| unknown [Populus trichocarpa]
          Length = 232

 Score =  203 bits (516), Expect = 3e-50
 Identities = 100/115 (86%), Positives = 105/115 (91%)
 Frame = +1

Query: 1   CYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNEYIDSAVRHVLLR 180
           CYGVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV EYIDSAVRHVLLR
Sbjct: 119 CYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLR 178

Query: 181 QGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKDEEYVRPALMATEIDVAAA 345
           QGVLGIKVKIMLDWDPKGK GPMTPLPDLVTIH PK+EEYV P +M T I++  A
Sbjct: 179 QGVLGIKVKIMLDWDPKGKVGPMTPLPDLVTIHPPKEEEYV-PPVMTTNIEIPVA 232