BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002154
         (900 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    67   2e-09

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 67.4 bits (163), Expect(2) = 2e-09
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
 Frame = +3

Query: 573 STNYMAETYAIIEGI*RALDRDGQYIWVESDSASVVKAFQE-ETVHWRVRTKWKQLREKA 749
           +T + AE  A I  I ++++ + + IW+E+DS  VVKAF   E V W++RT+W      A
Sbjct: 50  ATCFKAELCAAIFAIEKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALA 109

Query: 750 SWISVTATW--RETNTGADSCARHGAALQNGESKWWDNKPPF 869
             I    T   RE N GADS A++G +L    S+WW + P F
Sbjct: 110 QKIKCVCTHIHREGNAGADSLAKNGKSLALLTSQWWSSSPLF 151



 Score = 21.6 bits (44), Expect(2) = 2e-09
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 451 GTIKINVDGSSRG 489
           G +KIN+DGS+ G
Sbjct: 9   GRVKINLDGSAFG 21