BLASTX nr result

ID: Coptis21_contig00002134 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002134
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632356.1| PREDICTED: uncharacterized protein LOC100854...    83   3e-14
emb|CAN77097.1| hypothetical protein VITISV_002769 [Vitis vinifera]    82   6e-14
ref|XP_002520763.1| conserved hypothetical protein [Ricinus comm...    75   7e-12
ref|XP_002306767.1| predicted protein [Populus trichocarpa] gi|2...    73   3e-11
gb|AFK44119.1| unknown [Medicago truncatula]                           70   1e-10

>ref|XP_003632356.1| PREDICTED: uncharacterized protein LOC100854564 [Vitis vinifera]
          Length = 70

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 42/68 (61%), Positives = 48/68 (70%), Gaps = 8/68 (11%)
 Frame = +1

Query: 4   MGSSAKVNSFKSAVVVLGALAFGWLTIEIACKPFLEKARDAMDKSDPTRDPDD------- 162
           MG S +    KS +VV GALAFGWL IE+A KPFL+KAR A+DKSDPTRDPDD       
Sbjct: 1   MGKSTEAGPLKSVMVVFGALAFGWLAIELAFKPFLDKARSALDKSDPTRDPDDDEDGGTT 60

Query: 163 -KSSSDED 183
            KS SDE+
Sbjct: 61  QKSLSDEE 68


>emb|CAN77097.1| hypothetical protein VITISV_002769 [Vitis vinifera]
          Length = 70

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 40/60 (66%), Positives = 45/60 (75%)
 Frame = +1

Query: 4   MGSSAKVNSFKSAVVVLGALAFGWLTIEIACKPFLEKARDAMDKSDPTRDPDDKSSSDED 183
           MG S +    KS +VV GALAFGWL IE+A KPFL+KAR A+DKSDPTRDPDD    DED
Sbjct: 1   MGKSTEAGPLKSVMVVFGALAFGWLAIELAFKPFLDKARSALDKSDPTRDPDD----DED 56


>ref|XP_002520763.1| conserved hypothetical protein [Ricinus communis]
           gi|223540148|gb|EEF41725.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 69

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/48 (72%), Positives = 39/48 (81%)
 Frame = +1

Query: 34  KSAVVVLGALAFGWLTIEIACKPFLEKARDAMDKSDPTRDPDDKSSSD 177
           K A+VV+GALAFGWL IE+A KPFL+KAR AMDKSDP RDPDD    D
Sbjct: 7   KQAMVVVGALAFGWLAIEMAFKPFLDKARAAMDKSDPERDPDDSPPKD 54


>ref|XP_002306767.1| predicted protein [Populus trichocarpa] gi|222856216|gb|EEE93763.1|
           predicted protein [Populus trichocarpa]
          Length = 77

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 36/49 (73%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
 Frame = +1

Query: 34  KSAVVVLGALAFGWLTIEIACKPFLEKARDAMDKSDPTRDPD-DKSSSD 177
           K A VV GALAFGWL IE+A KPFL+KAR AMDKSDP RDPD D  S+D
Sbjct: 7   KQAAVVFGALAFGWLAIEMAFKPFLDKARSAMDKSDPARDPDGDDDSAD 55


>gb|AFK44119.1| unknown [Medicago truncatula]
          Length = 71

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 7/63 (11%)
 Frame = +1

Query: 34  KSAVVVLGALAFGWLTIEIACKPFLEKARDAMDKSDPTRDPDDKSSS-------DEDFQD 192
           K AVVV GALAF WL IE+A KPFL + RD++DKSDPTRDPDD  +S       + D  D
Sbjct: 5   KEAVVVAGALAFVWLAIELAFKPFLSQTRDSIDKSDPTRDPDDVPASAAAAVAPETDAGD 64

Query: 193 STA 201
           +TA
Sbjct: 65  ATA 67


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