BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00002011
         (1730 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containi...   258   5e-66
emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]   258   5e-66
ref|XP_002518774.1| pentatricopeptide repeat-containing protein,...   250   9e-64
ref|NP_565377.1| pentatricopeptide repeat-containing protein [Ar...   236   1e-59
ref|XP_002885974.1| hypothetical protein ARALYDRAFT_480424 [Arab...   234   4e-59

>ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690
           [Vitis vinifera]
          Length = 593

 Score =  258 bits (658), Expect = 5e-66
 Identities = 116/195 (59%), Positives = 150/195 (76%)
 Frame = -1

Query: 590 GYNADFNVFYELLNVCGNLKFLEEGKKVHSLLFKSQMRGNLVLLNKLIEMYGKCESMNEA 411
           G  AD   FY L N CG+ K LEE KKVH    +S  R +L L NK++EMYG C SM +A
Sbjct: 243 GVRADAQCFYALFNSCGSPKLLEEAKKVHDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDA 302

Query: 410 KQVFERMLDRDLDSWHAMMNGYATNGLGDDGLQ*FEEMRKLGLKPNEKTFLAGFAACGSA 231
           ++VF+ M +RD+DSWH M+NGYA N +GDDGLQ +E+MRKLGL+PNE+TFLA  + C SA
Sbjct: 303 RRVFDHMANRDMDSWHLMINGYANNAMGDDGLQLYEQMRKLGLEPNEQTFLAVLSTCASA 362

Query: 230 DAIEECFLHFDLMKNEYGISPSVEHYVGIVDVLGKCGYVTEAEEYVEKMPFEPTVEIWET 51
           +A+EE F+HF+ MK EYGI+P+ EHYVGI+DVLGK G+V EA+E++E+MP EP+  +WE 
Sbjct: 363 EAVEEGFIHFESMKTEYGITPTFEHYVGIIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEA 422

Query: 50  LMKVARVHGDIDLED 6
           LM  A++HGDIDLED
Sbjct: 423 LMNYAKIHGDIDLED 437



 Score = 65.1 bits (157), Expect(2) = 7e-12
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 6/58 (10%)
 Frame = -1

Query: 896 LDGKNRVNEFRHLAPYMNEEK------PTEQGFVLDTRYVLNDIDQEIKEQALLSHSE 741
           LDGKNR++EFR+   Y ++EK        E G+V DTRYVL+DIDQE KEQALL HSE
Sbjct: 470 LDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSE 527



 Score = 33.1 bits (74), Expect(2) = 7e-12
 Identities = 25/74 (33%), Positives = 29/74 (39%)
 Frame = -2

Query: 1096 LHGVVDLEDRAKELMNAARGRCKLMVGLXXXXXXXXXXXXXXXXDRAKGSLEKIPTPPPQ 917
            +HG +DLED A+ELM A                           D  K    K PTPPP+
Sbjct: 429  IHGDIDLEDHAEELMVAL--------------------------DPLKAVANKTPTPPPK 462

Query: 916  KWAGNNFLMGKTGL 875
            K    N L GK  L
Sbjct: 463  KRTAINMLDGKNRL 476


>emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]
          Length = 627

 Score =  258 bits (658), Expect = 5e-66
 Identities = 116/195 (59%), Positives = 150/195 (76%)
 Frame = -1

Query: 590 GYNADFNVFYELLNVCGNLKFLEEGKKVHSLLFKSQMRGNLVLLNKLIEMYGKCESMNEA 411
           G  AD   FY L N CG+ K LEE KKVH    +S  R +L L NK++EMYG C SM +A
Sbjct: 277 GVRADAQCFYALFNSCGSPKLLEEAKKVHDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDA 336

Query: 410 KQVFERMLDRDLDSWHAMMNGYATNGLGDDGLQ*FEEMRKLGLKPNEKTFLAGFAACGSA 231
           ++VF+ M +RD+DSWH M+NGYA N +GDDGLQ +E+MRKLGL+PNE+TFLA  + C SA
Sbjct: 337 RRVFDHMTNRDMDSWHLMINGYANNAMGDDGLQLYEQMRKLGLEPNEQTFLAVLSTCASA 396

Query: 230 DAIEECFLHFDLMKNEYGISPSVEHYVGIVDVLGKCGYVTEAEEYVEKMPFEPTVEIWET 51
           +A+EE F+HF+ MK EYGI+P+ EHYVGI+DVLGK G+V EA+E++E+MP EP+  +WE 
Sbjct: 397 EAVEEGFIHFESMKTEYGITPTFEHYVGIIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEA 456

Query: 50  LMKVARVHGDIDLED 6
           LM  A++HGDIDLED
Sbjct: 457 LMNYAKIHGDIDLED 471



 Score = 65.1 bits (157), Expect(2) = 7e-12
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 6/58 (10%)
 Frame = -1

Query: 896 LDGKNRVNEFRHLAPYMNEEK------PTEQGFVLDTRYVLNDIDQEIKEQALLSHSE 741
           LDGKNR++EFR+   Y ++EK        E G+V DTRYVL+DIDQE KEQALL HSE
Sbjct: 504 LDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSE 561



 Score = 33.1 bits (74), Expect(2) = 7e-12
 Identities = 25/74 (33%), Positives = 29/74 (39%)
 Frame = -2

Query: 1096 LHGVVDLEDRAKELMNAARGRCKLMVGLXXXXXXXXXXXXXXXXDRAKGSLEKIPTPPPQ 917
            +HG +DLED A+ELM A                           D  K    K PTPPP+
Sbjct: 463  IHGDIDLEDHAEELMVAL--------------------------DPLKAVANKTPTPPPK 496

Query: 916  KWAGNNFLMGKTGL 875
            K    N L GK  L
Sbjct: 497  KRTAINMLDGKNRL 510


>ref|XP_002518774.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542155|gb|EEF43699.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 573

 Score =  250 bits (638), Expect = 9e-64
 Identities = 112/199 (56%), Positives = 149/199 (74%)
 Frame = -1

Query: 599 LGNGYNADFNVFYELLNVCGNLKFLEEGKKVHSLLFKSQMRGNLVLLNKLIEMYGKCESM 420
           +  G  AD + FY L  +CG +   E+ KKVH    +S  RG++ L  K+IEMYGKC SM
Sbjct: 289 MDKGVKADADCFYALFELCGKI---EDAKKVHDYFLQSTCRGDVRLNKKVIEMYGKCGSM 345

Query: 419 NEAKQVFERMLDRDLDSWHAMMNGYATNGLGDDGLQ*FEEMRKLGLKPNEKTFLAGFAAC 240
            +A++VF+ M DRD+D WH M+NGYA+N LGD+GLQ FE+MR+ GLKP  +TFLA  +AC
Sbjct: 346 TDARRVFDHMKDRDIDLWHLMINGYASNNLGDEGLQLFEQMRQSGLKPTAETFLAVLSAC 405

Query: 239 GSADAIEECFLHFDLMKNEYGISPSVEHYVGIVDVLGKCGYVTEAEEYVEKMPFEPTVEI 60
            SA+A+EE FLHF+ MKNEYG +P  EHY+G++DVLGK GY+ E +EY++K+PFEPTV++
Sbjct: 406 ASAEAVEEGFLHFESMKNEYGFNPGTEHYLGVIDVLGKSGYINEIQEYIQKLPFEPTVDV 465

Query: 59  WETLMKVARVHGDIDLEDR 3
           W  L   AR+HGD+DLEDR
Sbjct: 466 WGALRNYARIHGDVDLEDR 484


>ref|NP_565377.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216221|sp|Q9ZQE5.2|PP153_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g15690 gi|14335136|gb|AAK59848.1| At2g15690/F9O13.24
           [Arabidopsis thaliana] gi|20197709|gb|AAD17413.2|
           Expressed protein [Arabidopsis thaliana]
           gi|29028728|gb|AAO64743.1| At2g15690/F9O13.24
           [Arabidopsis thaliana] gi|330251336|gb|AEC06430.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 579

 Score =  236 bits (602), Expect = 1e-59
 Identities = 109/198 (55%), Positives = 138/198 (69%)
 Frame = -1

Query: 599 LGNGYNADFNVFYELLNVCGNLKFLEEGKKVHSLLFKSQMRGNLVLLNKLIEMYGKCESM 420
           L  G   D   F  L   C NLK LE  KKVH    +S+ RG+  L N +I M+G+C S+
Sbjct: 228 LDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSI 287

Query: 419 NEAKQVFERMLDRDLDSWHAMMNGYATNGLGDDGLQ*FEEMRKLGLKPNEKTFLAGFAAC 240
            +AK+VF+ M+D+D+DSWH MM  Y+ NG+GDD L  FEEM K GLKPNE+TFL  F AC
Sbjct: 288 TDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLAC 347

Query: 239 GSADAIEECFLHFDLMKNEYGISPSVEHYVGIVDVLGKCGYVTEAEEYVEKMPFEPTVEI 60
            +   IEE FLHFD MKNE+GISP  EHY+G++ VLGKCG++ EAE+Y+  +PFEPT + 
Sbjct: 348 ATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADF 407

Query: 59  WETLMKVARVHGDIDLED 6
           WE +   AR+HGDIDLED
Sbjct: 408 WEAMRNYARLHGDIDLED 425



 Score = 52.4 bits (124), Expect(2) = 1e-07
 Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 4/53 (7%)
 Frame = -1

Query: 887 KNRVNEFRHLAPYMNEEKP--TEQG--FVLDTRYVLNDIDQEIKEQALLSHSE 741
           K+R+ EFR+L  Y +E K    ++G  +V DTR+VL+DIDQE KEQALL HSE
Sbjct: 461 KSRILEFRNLTFYKDEAKEMAAKKGVVYVPDTRFVLHDIDQEAKEQALLYHSE 513



 Score = 31.2 bits (69), Expect(2) = 1e-07
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -2

Query: 1096 LHGVVDLEDRAKELMNAARGRCKLMVGLXXXXXXXXXXXXXXXXDRAKGSLEKIPTPPPQ 917
            LHG +DLED  +ELM                             D +K  + KIPTPPP+
Sbjct: 417  LHGDIDLEDYMEELM--------------------------VDVDPSKAVINKIPTPPPK 450

Query: 916  KWAGNNFLMGKTGLM 872
             +   N +  K+ ++
Sbjct: 451  SFKETNMVTSKSRIL 465


>ref|XP_002885974.1| hypothetical protein ARALYDRAFT_480424 [Arabidopsis lyrata subsp.
           lyrata] gi|297331814|gb|EFH62233.1| hypothetical protein
           ARALYDRAFT_480424 [Arabidopsis lyrata subsp. lyrata]
          Length = 548

 Score =  234 bits (598), Expect = 4e-59
 Identities = 107/198 (54%), Positives = 138/198 (69%)
 Frame = -1

Query: 599 LGNGYNADFNVFYELLNVCGNLKFLEEGKKVHSLLFKSQMRGNLVLLNKLIEMYGKCESM 420
           L  G   D   F  L   C NLK LE  KKVH    +S+ RG+  L N +I M+G+C S+
Sbjct: 197 LDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECRSV 256

Query: 419 NEAKQVFERMLDRDLDSWHAMMNGYATNGLGDDGLQ*FEEMRKLGLKPNEKTFLAGFAAC 240
            +AK+VF+ M+D+D+DSWH MM  Y+ NG+GDD L  FEEM K GLKPNE+TFL  F AC
Sbjct: 257 TDAKRVFDHMVDKDMDSWHLMMRAYSDNGMGDDALHLFEEMTKQGLKPNEETFLTVFLAC 316

Query: 239 GSADAIEECFLHFDLMKNEYGISPSVEHYVGIVDVLGKCGYVTEAEEYVEKMPFEPTVEI 60
            +   I+E FLHFD M+NE+GISP  EHY+G++ VLGKCG++ EAE+Y+  +PFEPT + 
Sbjct: 317 ATVGGIKEAFLHFDSMRNEHGISPKTEHYLGVLGVLGKCGHLIEAEQYIRDLPFEPTADF 376

Query: 59  WETLMKVARVHGDIDLED 6
           WE +   AR+HGDIDLED
Sbjct: 377 WEAMRNYARLHGDIDLED 394