BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001974
         (3747 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...  1520   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1489   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1466   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1463   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1450   0.0  

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 1520 bits (3935), Expect = 0.0
 Identities = 750/1122 (66%), Positives = 892/1122 (79%), Gaps = 1/1122 (0%)
 Frame = -3

Query: 3586 MSKTIQVSGLPSHVSAPVVKEFLERHAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRG 3407
            MSKT++VSG PS  +A  V+ FLE H G GTV ALKIR+ ++ G   R +A+VQFTTTR 
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58

Query: 3406 VETILSLSSQCLYYGISRLKVHNMERDIVPKPREMMLSLDVPALHFGCQVSGESFKAFWK 3227
             E I+SL++  L+YG S L    M+RDI+P+PR  + +++   LHFG Q S E F A W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 3226 RANVVVNFGFGLRKVELLLSYYGVDYKLELFYDSIWQIQLHRPRSLNTKYLVIQVFGAPR 3047
              NV VNFG G+RK+   LS+   +YKL L +++IWQI+LHRPR    KYL+IQ++GAPR
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 3046 IYEKLTCSSGDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2867
            IYE+   SS +++ DP LNYFRD PD+QWVR TDFT S  IG SS++CLELP    L   
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238

Query: 2866 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2687
             +NF YY ENE  F+LESG  FS++ +LVPIVGP  G+ LPY++LF+VN LVQNGCLAG 
Sbjct: 239  NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298

Query: 2686 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2507
             LD  F+RLV P  +P+  IE ALE+L  LK+CCYEP +W NEQY KY TS    R+   
Sbjct: 299  MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358

Query: 2506 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2327
            SLD GLVY+ +V++TP KV+FC P+VN+SNRV+R + E IDNF+RVSF DE+ EK+ STD
Sbjct: 359  SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418

Query: 2326 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2147
            +SPR +S+NE RR T+IY RILSTL+NGIVIGDKKFEFLAFSSSQLR+NS WMFAS  GL
Sbjct: 419  VSPRTSSRNELRR-TAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2146 TAGTIRKWMGKFHEIRNVAKYAARLGQSFSSSRETLTVDSHEIEVIPDVEVGSNGKRYVF 1967
            TA  IR WMG FH+IRNVA+YAARLGQSF SS ETL+V SHEIE+IPD+EV   G RY+F
Sbjct: 478  TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537

Query: 1966 SDGIGKISVEFARRVAKKCGINGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1787
            SDGIGKIS EFAR+VA KCG  GFTPS+FQIRY GYKGVVAVDPTS  KLSLR+SM KY 
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597

Query: 1786 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1607
            S NTKLDVL+ SKYQPCFLNRQLI+LLSTLGV DH FE+KQ+EAVDQLD +LTDP  A E
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657

Query: 1606 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1427
            ALE+MSPGEN ++LKEML+CGY+PD EPFLSMMLQTFRA KLLELR KTRIF+PNGR+MM
Sbjct: 658  ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717

Query: 1426 GCLDENRILEYGQVFVQFSHICPQRFQGNTPFTTSINKSDQRKS-IVKGRVIVAKNPCLH 1250
            GCLDE R LE+GQVFV+FS     RF+     +   ++  + +  ++KG V+VAKNPCLH
Sbjct: 718  GCLDETRTLEHGQVFVKFSG---SRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLH 774

Query: 1249 PGDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQI 1070
            PGD+R+L+AVD+PALHH+VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +QI
Sbjct: 775  PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834

Query: 1069 DPMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADREREKAESDACIE 890
             PMDYTPEP + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA AD+E  KA S+ C+E
Sbjct: 835  SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894

Query: 889  LARLFSIAVDFPKTGVPAVIPPHLNVKEYPDFMEKLDKPTYESHRVIGKLFRAVKDIAPQ 710
            LAR FSIAVDFPKTGVPA IP +L  +EYPDFMEK DKP+YES  VIGKLFR VKDIAP+
Sbjct: 895  LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954

Query: 709  TSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYFKGEYDFKLASRMDYYGIKTEAELLG 530
            TS I+SFT ++AR+ YD DME+DGFEDYI+DA+Y+K  YD+KL + M+YYGIKTEAELL 
Sbjct: 955  TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014

Query: 529  GSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTY 350
            GS MKMSK+F K+RD E I +AVRSLKKE R+WF+EK S    +ADD+ AKASAWYHVTY
Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTY 1074

Query: 349  HPDYWGCYNEGMGKDHFLSFPWCVSDKLIHIKRMSNVRKRLS 224
            H +YWGCYNEGM +DHFLSFPWCV DKLI IKR ++ R R S
Sbjct: 1075 HHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRS 1116


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1489 bits (3854), Expect = 0.0
 Identities = 750/1137 (65%), Positives = 885/1137 (77%), Gaps = 11/1137 (0%)
 Frame = -3

Query: 3586 MSKTIQVSGLPSHVSAPVVKEFLERHAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRG 3407
            MSKTIQV G PS VSA  +KEFLE++ GEGT+ AL+I+Q +S        A VQFT+   
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58

Query: 3406 VETILSLSSQCLYYGISRLKVHNMERDIVPKPREMMLSLDVPALHFGCQVSGESFKAFWK 3227
             E I++L  + ++YG + LK   M+ DI+PKPR  + S+D   LHFGCQ+S E F   WK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 3226 RANVVVNFGFGLRKVELLLSYYGVDYKLELFYDSIWQIQLHRPRSLNTKYLVIQVFGAPR 3047
              NV V FG GLRK    LS+   +YKLEL Y++IWQIQL  PR   TK+L+IQ+ GAP+
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 3046 IYEKLTCSSGDIYGDPDLNY-FRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSA 2870
            IYEK      D+   P L+Y F++ PDDQWVR  DFT S  IGQS A+CLELP    L  
Sbjct: 179  IYEK------DV---PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPN 229

Query: 2869 VRDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAG 2690
             R+NF YY EN+ +F+LESGS +S +L LVPI+GPPQG  LP+ +LFK+N+LVQNGCL+G
Sbjct: 230  FRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSG 289

Query: 2689 PTLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARS 2510
            PTLD +FFRLV P+  PI+ IE ALE+L  LK+CCYEP+RWL+EQY  Y   K +  + +
Sbjct: 290  PTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPA 348

Query: 2509 TSLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRST 2330
             SLD GLVY+RRV++TP KVYFC P+VN+SNRV+R++ E IDNF+RVSF DE+ EK+ ST
Sbjct: 349  ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 408

Query: 2329 DLSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENG 2150
             +SPR + +    R T +Y+RILS L+NGIVIGDKKF+FLAFSSSQLRDNSAWMFAS  G
Sbjct: 409  VISPRMSKEG---RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPG 465

Query: 2149 LTAGTIRKWMGKFHEIRNVAKYAARLGQSFSSSRETLTVDSHEIEVIPDVEVGSNGKRYV 1970
            LTA  IR WMG F +IRNVAKYAARLGQSFSSS+ETL V   EIE IPD+E+      YV
Sbjct: 466  LTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYV 525

Query: 1969 FSDGIGKISVEFARRVAKKCGINGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKY 1790
            FSDGIGKIS + A RVA KCG    TPS+FQIRYGGYKGVVAVDPTS  KLSLRKSM KY
Sbjct: 526  FSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKY 585

Query: 1789 ISRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMAL 1610
             S NT LDVL+WSKYQP FLNRQLI+LLSTLGVKDH+FEKKQ+ AVDQLD IL DP  A 
Sbjct: 586  ESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQ 645

Query: 1609 EALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAM 1430
            EALE+MSPGEN +VLKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIFVPNGR+M
Sbjct: 646  EALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSM 705

Query: 1429 MGCLDENRILEYGQVFVQFSHICP-QRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCL 1253
            MGCLDE R LEYG+VFVQ S     Q F  +  F  S +  D    I++G+++VAKNPCL
Sbjct: 706  MGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDN--FILEGKIVVAKNPCL 763

Query: 1252 HPGDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQ 1073
            HPGDVRVL AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD +LIPP+Q
Sbjct: 764  HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823

Query: 1072 IDPMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADREREKAESDACI 893
            I+PMDYTP PT  LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FAD+E +KA  D C 
Sbjct: 824  INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883

Query: 892  ELARLFSIAVDFPKTGVPAVIPPHLNVKEYPDFMEKLDKPTYESHRVIGKLFRAVKDIAP 713
            ELA+LFSIAVDFPKTGVPA IP +L VKEYPDFMEK DKPTYES  VIGKLFR VKDIAP
Sbjct: 884  ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943

Query: 712  QTSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYFKGEYDFKLASRMDYYGIKTEAELL 533
                I+SFT+++AR+SYD DME+ GFEDY+ DA+Y+K EYD+KL + MDYYGIKTE+E+L
Sbjct: 944  HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003

Query: 532  GGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVT 353
             GS+M+MSK+FD+R+D E I LAV+SL+KE R WF++  S++  EADD+YAKASAWYHVT
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVT 1063

Query: 352  YHPDYWGCYNEGMGKDHFLSFPWCVSDKLIHIKR---------MSNVRKRLSEALRL 209
            YHPDYWGCYNEGM +DHFLSFPWCV DKLIH KR         +S++ +RLS+ LRL
Sbjct: 1064 YHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1466 bits (3794), Expect = 0.0
 Identities = 743/1113 (66%), Positives = 870/1113 (78%), Gaps = 1/1113 (0%)
 Frame = -3

Query: 3586 MSKTIQVSGLPSHVSAPVVKEFLERHAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRG 3407
            M KTIQV G+PS+VSA  +KEFLE++ GEGT+ AL+I+Q KS        A VQFT+ R 
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58

Query: 3406 VETILSLSSQCLYYGISRLKVHNMERDIVPKPREMMLSLDVPALHFGCQVSGESFKAFWK 3227
             E I+SL+ Q L+YG + LK   M+ DI+PKPR  + S+D   LHFG Q+S E F   WK
Sbjct: 59   AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117

Query: 3226 RANVVVNFGFGLRKVELLLSYYGVDYKLELFYDSIWQIQLHRPRSLNTKYLVIQVFGAPR 3047
              NV V FGFGLRK    LS+   +YKLEL  ++IWQIQL  PR  NTK+L+IQ+  AP+
Sbjct: 118  AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177

Query: 3046 IYEKLTCSSGDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2867
            IYEK   +         L+YF++TPDDQWVR  DFT S  IGQSSA+CLELP    L   
Sbjct: 178  IYEKDVSA---------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNF 228

Query: 2866 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2687
             +NF  Y EN+ +F+LESG+ FS +L LVPIVGPPQG  LP+ +LFK+N+LVQNGCL+GP
Sbjct: 229  CENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGP 288

Query: 2686 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2507
            TLD  FFR V PQ + I+ IE ALE+L  L++CCYEP+RWL+EQY  Y  SK +  + + 
Sbjct: 289  TLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQVAGSPAI 347

Query: 2506 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2327
            SLD GLVY+RRV++TP KVYFC P+VN+SNRV+R++ E IDNF+RVSF DE+ EK+ ST 
Sbjct: 348  SLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTV 407

Query: 2326 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2147
            +SPR +  NE RR T +Y+RILS L+NGIVIGDKKF+FLA SSSQLRDNSAWMFAS  GL
Sbjct: 408  ISPRMS--NEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGL 464

Query: 2146 TAGTIRKWMGKFHEIRNVAKYAARLGQSFSSSRETLTVDSHEIEVIPDVEVGSNGKRYVF 1967
            TA  IR  MG F +IRNVAKYAARLGQSFSSS+ETL V  HEIE+IPD+E   +G  YVF
Sbjct: 465  TAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVF 524

Query: 1966 SDGIGKISVEFARRVAKKCGINGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1787
            SDGIGKIS E A RVA KCG    TPS+FQIRYGGYKGVVAVDPTS  KLSLRKSM KY 
Sbjct: 525  SDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 584

Query: 1786 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1607
            S NT LDVLSWSKY+PCFLNRQLI+LLSTLGVKDH+FEKKQ+EAVDQLD IL DP  A E
Sbjct: 585  SENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQE 644

Query: 1606 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1427
            ALE+MSPGEN ++LKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIFVPNGR+MM
Sbjct: 645  ALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 704

Query: 1426 GCLDENRILEYGQVFVQFSHICP-QRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLH 1250
            GCLDE R LEYG+VFVQ S     Q F  +  F  S +  D    I++G+V+VAKNPCLH
Sbjct: 705  GCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDN--FILEGKVVVAKNPCLH 762

Query: 1249 PGDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQI 1070
            PGDVR+L AVD+PALHH+VDCVVFPQKG RPHP+ECSGSDLDGDIYFV WDH+LIPPRQI
Sbjct: 763  PGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQI 822

Query: 1069 DPMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADREREKAESDACIE 890
            +PMDYTP PT  LDHDV IEEV+EYFTNYI ND LGIIANAHT FAD+E +KA    C E
Sbjct: 823  NPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKE 882

Query: 889  LARLFSIAVDFPKTGVPAVIPPHLNVKEYPDFMEKLDKPTYESHRVIGKLFRAVKDIAPQ 710
            LA+LFSIA++FPKTGVPA IP HL+VKEYPDFMEK +KPTYES  VIGKLFR VKD+AP 
Sbjct: 883  LAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPH 942

Query: 709  TSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYFKGEYDFKLASRMDYYGIKTEAELLG 530
               ++SFT+++A +SYD DME+DGFEDY+ DA+Y+K +YDFKL S MD  GI+TE+E+L 
Sbjct: 943  NYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILS 1002

Query: 529  GSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTY 350
            GS+MKMSK+FDKR+D E I LAVRSL+KE R WF++  S +   ADD+YA ASAWYHVTY
Sbjct: 1003 GSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTY 1062

Query: 349  HPDYWGCYNEGMGKDHFLSFPWCVSDKLIHIKR 251
            HP YWGCYNEGM  DHFLSFPWCV DKLI IKR
Sbjct: 1063 HPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKR 1095


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1463 bits (3787), Expect = 0.0
 Identities = 724/1112 (65%), Positives = 864/1112 (77%)
 Frame = -3

Query: 3586 MSKTIQVSGLPSHVSAPVVKEFLERHAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRG 3407
            M KTIQV G  S VSA  VK FLE + G  TV+ALKIRQ K  G   RAFA+VQFT +  
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 3406 VETILSLSSQCLYYGISRLKVHNMERDIVPKPREMMLSLDVPALHFGCQVSGESFKAFWK 3227
               I+ L++Q LYYG S LK   ME DIVPKPR  + +++   ++FGCQVS E F   WK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 3226 RANVVVNFGFGLRKVELLLSYYGVDYKLELFYDSIWQIQLHRPRSLNTKYLVIQVFGAPR 3047
              NV +NFG G+RK+E LLSY    YKLELFY++IWQI+L  P S  +K+L+IQ+FGAPR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 3046 IYEKLTCSSGDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2867
            IYEK   +S  ++ DP LNYF+D PDDQWVR TDFT S+CIGQSS + LELP +  L   
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237

Query: 2866 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2687
            R+NF YY ENE R +LESGS +S +L LVPIV P + ++LP+ +LFKVN LVQNGC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2686 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2507
             LD  F+RLV P  +   +I+ ALE+L  L++CCYEP RWL E+Y  +  S+    + + 
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 2506 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2327
            SLD+GLVY+RRV++TPS+VYFC P++N+SNRV+R FH  IDNF+R+SF DE+ EK+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 2326 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2147
            +  R        R T IYKRILSTLRNGIVIG+K+FEFLAFSSSQLR+NSAWMFAS  GL
Sbjct: 418  VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 2146 TAGTIRKWMGKFHEIRNVAKYAARLGQSFSSSRETLTVDSHEIEVIPDVEVGSNGKRYVF 1967
            TA  IR WMG F +IRNVAKYAARLGQSFSSS ETL+V   EI +IPD+E+  +G +YVF
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1966 SDGIGKISVEFARRVAKKCGINGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1787
            SDGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DPTS  KLSLRKSM KY 
Sbjct: 531  SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1786 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1607
            S NTKLDVL+WSKYQPCFLNRQLI+LLSTLGV D  FEKKQ+E VDQL+ +LTDP  A E
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 1606 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1427
            ALE+MSPGEN ++LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIFV  GR+MM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 1426 GCLDENRILEYGQVFVQFSHICPQRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1247
            GCLDE R L YGQVFVQFS                     +R+ IV+G+VIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHP 753

Query: 1246 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1067
            GDVRVL+AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QID
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 1066 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADREREKAESDACIEL 887
            PMDY+P  T  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFADRE +KA S  C+EL
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLEL 873

Query: 886  ARLFSIAVDFPKTGVPAVIPPHLNVKEYPDFMEKLDKPTYESHRVIGKLFRAVKDIAPQT 707
            A+LFSIAVDFPKTGVPA IP  L VKEYPDFMEK DKP+Y+SH VIGKLFR VK++AP  
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNE 933

Query: 706  SCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYFKGEYDFKLASRMDYYGIKTEAELLGG 527
              IK  T+E  +R YD DME++GFEDYI+DA++ K +YD+KL + MDYYG+KTEAE+LGG
Sbjct: 934  CSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGG 993

Query: 526  SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 347
             +MKMS++F K+RD E I +AVRSL+KE R+WF+EK S+   E DD YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 346  PDYWGCYNEGMGKDHFLSFPWCVSDKLIHIKR 251
            P YWG YNEGM +DHFLSFPWCV DKLI IK+
Sbjct: 1054 PSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKK 1085


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1450 bits (3754), Expect = 0.0
 Identities = 722/1126 (64%), Positives = 866/1126 (76%)
 Frame = -3

Query: 3586 MSKTIQVSGLPSHVSAPVVKEFLERHAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRG 3407
            M KTIQV G  S VSA  VK FLE + G  TV+ALKIRQ K  G   RAFA+VQFT +  
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 3406 VETILSLSSQCLYYGISRLKVHNMERDIVPKPREMMLSLDVPALHFGCQVSGESFKAFWK 3227
               I+ L++Q LYYG S LK   ME DIVPKPR  + +++   ++F C VS E F   WK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 3226 RANVVVNFGFGLRKVELLLSYYGVDYKLELFYDSIWQIQLHRPRSLNTKYLVIQVFGAPR 3047
              NV +NFG G+RK+E LLSY    YKLELFY++IWQI+L  P S  +K+L+IQ+FGAPR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 3046 IYEKLTCSSGDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2867
            IYEK   +S  ++ DP LNYF+D PDDQWVR TDFT S+CIGQSS +CLELP +  L   
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237

Query: 2866 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2687
            R+NF YY ENE R +LESGS +S +L LVPIV P + ++LP+ +LFKVN LVQNGC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2686 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2507
             LD  F+RLV P  +   +I+ ALE+L  L++CCYEP RWL E+Y  +  S+    + + 
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 2506 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2327
            SLD+GLVY+RRV++TPS+VYFC P++N+SNRV+R FH  IDNF+R+SF DE+ EK+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 2326 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2147
            +  R        R T IYKRILSTLRNGIVIG+K+FEFLAFSSSQLR+NSAWMFAS  GL
Sbjct: 418  VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 2146 TAGTIRKWMGKFHEIRNVAKYAARLGQSFSSSRETLTVDSHEIEVIPDVEVGSNGKRYVF 1967
            TA  IR WMG F +IRNVAKYAARLGQSFSSS ETL+V   EI +IPD+E+  +G +YVF
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1966 SDGIGKISVEFARRVAKKCGINGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1787
             DGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DPTS  KLSLRKSM KY 
Sbjct: 531  PDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1786 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1607
            S NTKLDVL+WSKYQPCFLNRQLI+LLSTLGV D+ FEKKQ+E VDQL+ +LTDP  A E
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 1606 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1427
            ALE+MSPGEN ++LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIFV  GR+MM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 1426 GCLDENRILEYGQVFVQFSHICPQRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1247
            GCLDE R L YGQVFVQFS                     +R+ IV+G+VIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHP 753

Query: 1246 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1067
            GDVRVL+AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QID
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 1066 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADREREKAESDACIEL 887
            PMDY+P  T  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFADRE  KA S  C+EL
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLEL 873

Query: 886  ARLFSIAVDFPKTGVPAVIPPHLNVKEYPDFMEKLDKPTYESHRVIGKLFRAVKDIAPQT 707
            A+LFSIAVDFPKTGVPA IP  L VKE+PDFMEK DKP+Y+S+ VIGKLFR VK++AP  
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNE 933

Query: 706  SCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYFKGEYDFKLASRMDYYGIKTEAELLGG 527
              IK  T+E  +R YD DME++GF DYI+DA+++K +YD+KL + MDYYG+KTEAE+L G
Sbjct: 934  CSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSG 993

Query: 526  SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 347
             +MKMS++F K+RD E I +AVRSL+KE R+WF+EK S+   E DD YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 346  PDYWGCYNEGMGKDHFLSFPWCVSDKLIHIKRMSNVRKRLSEALRL 209
              YWG YNEGM +DHFLSFPWCV DKLI IK+    +  L EAL L
Sbjct: 1054 HSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKK---EKAALREALDL 1096