BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001973
         (3738 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1409   0.0  
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...  1392   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1390   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1386   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1383   0.0  

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1409 bits (3647), Expect = 0.0
 Identities = 713/1135 (62%), Positives = 867/1135 (76%), Gaps = 6/1135 (0%)
 Frame = +3

Query: 51   MGKTVNIHGFPTNISAEEVKIFLENLTGNGTVHALKVKPSQTAARNPRAFAIVQFTTTES 230
            M KT+ ++GFP+ +SA+E+K FLE  TG GT+ AL++K  ++ A      A VQFT+ E 
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58

Query: 231  VERISSLINQRLLYGISRLKVWDMDRDIVPRPRASMLSLEITAMHFGNQVSPERFSVLWK 410
             E I +L  +++ YG + LK  +MD DI+P+PRA + S++   +HFG Q+S ERF VLWK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 411  GMGVVVNFEAGLRKMEFLFSYCRREYKLEFSYDSIWAIQLRCPPKQNKKFLVIQVSAAPR 590
             + V V F +GLRK  F  S+   EYKLE SY++IW IQL+ P  Q  KFL+IQ+  AP+
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 591  IYEKGLASSGQTYNDLALTYFKDAIDDQWVRTTDFTTSCCIGQSSAVCLELPLTYIPRGI 770
            IYEK +         +   YFK+A DDQWVR  DFT SC IGQS A+CLELP        
Sbjct: 179  IYEKDVP--------VLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNF 230

Query: 771  RENFYYYKEDEGHFYLENGSTFSRSLDLVPIVGPPQGLNLPYSTLFKINFLVQSGCLAGP 950
            RENF YYKE++G F LE+GS++S +L LVPI+GPPQG +LP+  LFKIN LVQ+GCL+GP
Sbjct: 231  RENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGP 290

Query: 951  TLDSAFYRLVNPQHVPSAHIEHALEKLRFSKECCYEPAKWLGELYKTYSRLKHFNKPSVS 1130
            TLD++F+RLV+P+  P + IEHALEKL   KECCYEP +WL E Y+TY +      P++S
Sbjct: 291  TLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAIS 350

Query: 1131 LNDGVVFVRRVQITPLKVYFYGPEVIVSNRVLRDHHNLIDNFIRVSFVDEDGKKMWSTDL 1310
            L+ G+V+VRRVQITP KVYF GPEV VSNRVLR++   IDNF+RVSF+DE+ +K+ ST +
Sbjct: 351  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVI 410

Query: 1311 SPRTLPNEIKRHTDIYRRILSTLRNGITIGEKKFEFLAYSSSQLRESSVWMFASGNGVTA 1490
            SPR   ++  R T +YRRILS L+NGI IG+KKF+FLA+SSSQLR++S WMFAS  G+TA
Sbjct: 411  SPRM--SKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTA 468

Query: 1491 DCIRDGMGDFREIRNVAKYAARLGQSFSSSKETLSVPREEMKIIPDVKTERNGVKYVFSD 1670
              IR  MGDF +IRNVAKYAARLGQSFSSSKETL V ++E++ IPD++  +    YVFSD
Sbjct: 469  AEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSD 528

Query: 1671 GIGKISPKFAQKIAKKCGINGSSPSCFQIRYGGYKGVVAVAPTSGTKLSLRRSMFKYTSD 1850
            GIGKISP+ A ++A KCG   S+PS FQIRYGGYKGVVAV PTS  KLSLR+SMFKY SD
Sbjct: 529  GIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESD 588

Query: 1851 NTELDVLSWSKFQPCFLNRQLITLLSTLGVQDQIFEKKQREILSQLDMILTDSQRALEAL 2030
            NT LDVL+WSK+QP FLNRQLITLLSTLGV+D +FEKKQR  + QLD IL D   A EAL
Sbjct: 589  NTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEAL 648

Query: 2031 EIMSPGENRNVLTEMLSCGYKPDAEPFLSMMLQTFRXXXXXXXXXXXRIYIPNGRSLMGC 2210
            E+MSPGEN NVL EML CGYKPDAEPFLSMMLQTFR           RI++PNGRS+MGC
Sbjct: 649  ELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGC 708

Query: 2211 LDETRTLEYGEVFIQISHAGRKQN-GNGGLFASSWTGSHQRNRIVEGTVVVAKNPCLHPG 2387
            LDETRTLEYGEVF+QIS  G +Q+ G+  +F  S  GSH  N I+EG +VVAKNPCLHPG
Sbjct: 709  LDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGS--GSHHDNFILEGKIVVAKNPCLHPG 766

Query: 2388 DVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVSWDHELIPPREVEP 2567
            DVRVL AVN P LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD +LIPP+++ P
Sbjct: 767  DVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINP 826

Query: 2568 MDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACRELA 2747
            MDYTPAP  ++DHDV +EEV EYF NY+V+DSLGIIANAHT FADKE   A    C ELA
Sbjct: 827  MDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELA 886

Query: 2748 RLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRS 2927
            +LFSIAVDFPKTG PA+IP +L VKEYPDFMEK DKPTYESQ VIGKLFREVKDI PH  
Sbjct: 887  KLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNC 946

Query: 2928 CIPSFTWEVAKRCYDQDMEVDGYAYYLDDAQQYKEKYDFKLGNLMDTYGIKTEADILARG 3107
             I SFT +VA++ YD DMEV G+  Y+ DA  YK +YD+KLGNLMD YGIKTE++IL+  
Sbjct: 947  NIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGS 1006

Query: 3108 LVKESISYNRKKDADAIGEAVRSLRKEARKWFDEKG----SNSDDIYAKASAWYHVTYHP 3275
            +++ S S++R+KDA+AIG AV+SLRKEAR WF++ G    S +DD+YAKASAWYHVTYHP
Sbjct: 1007 IMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHP 1066

Query: 3276 NYWGAYNEGMKRDHYLSFPWCVHDKLIHIKRQK-AKKVPEYQSLEEQFRRGVRFG 3437
            +YWG YNEGM RDH+LSFPWCV+DKLIH KR+K + +     SLE +  +G+R G
Sbjct: 1067 DYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRLG 1121


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 1392 bits (3603), Expect = 0.0
 Identities = 703/1135 (61%), Positives = 855/1135 (75%), Gaps = 9/1135 (0%)
 Frame = +3

Query: 51   MGKTVNIHGFPTNISAEEVKIFLENLTGNGTVHALKVKPSQTAARNPRAFAIVQFTTTES 230
            M KTV + GFP++ +A  V++FLE+ TG GTV ALK++  +T     R +AIVQFTTT +
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58

Query: 231  VERISSLINQRLLYGISRLKVWDMDRDIVPRPRASMLSLEITAMHFGNQVSPERFSVLWK 410
             E+I SL N RL YG S L    MDRDI+P+PR+ + ++E   +HFG Q S E+FS +W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 411  GMGVVVNFEAGLRKMEFLFSYCRREYKLEFSYDSIWAIQLRCPPKQNKKFLVIQVSAAPR 590
            G  V VNF  G+RK+ F  S+   EYKL   +++IW I+L  P  Q  K+L+IQ+  APR
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 591  IYEKGLASSGQTYNDLALTYFKDAIDDQWVRTTDFTTSCCIGQSSAVCLELPLTYIPRGI 770
            IYE+ + SS   + D  L YF+D  D+QWVRTTDFT SC IG SS++CLELP        
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238

Query: 771  RENFYYYKEDEGHFYLENGSTFSRSLDLVPIVGPPQGLNLPYSTLFKINFLVQSGCLAGP 950
             ENF+YYKE+EG F LE+G TFSR+ DLVPIVGP  G+NLPY+ LF++N LVQ+GCLAG 
Sbjct: 239  NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298

Query: 951  TLDSAFYRLVNPQHVPSAHIEHALEKLRFSKECCYEPAKWLGELYKTYSRLKHFNK-PSV 1127
             LD  FYRLV+P  +P   IE+ALEKL   KECCYEP+KW  E YK Y    +  + P +
Sbjct: 299  MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358

Query: 1128 SLNDGVVFVRRVQITPLKVYFYGPEVIVSNRVLRDHHNLIDNFIRVSFVDEDGKKMWSTD 1307
            SL+ G+V+V +VQITP KV+F GPEV VSNRVLR +   IDNF+RVSFVDE+ +K+ STD
Sbjct: 359  SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418

Query: 1308 LSPRTLPNEIKRHTDIYRRILSTLRNGITIGEKKFEFLAYSSSQLRESSVWMFASGNGVT 1487
            +SPRT      R T IY RILSTL+NGI IG+KKFEFLA+SSSQLRE+S WMFAS  G+T
Sbjct: 419  VSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLT 478

Query: 1488 ADCIRDGMGDFREIRNVAKYAARLGQSFSSSKETLSVPREEMKIIPDVKTERNGVKYVFS 1667
            A  IR  MG F +IRNVA+YAARLGQSF SS ETLSV   E++IIPD++  R G +Y+FS
Sbjct: 479  AADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFS 538

Query: 1668 DGIGKISPKFAQKIAKKCGINGSSPSCFQIRYGGYKGVVAVAPTSGTKLSLRRSMFKYTS 1847
            DGIGKIS +FA+K+A KCG  G +PS FQIRY GYKGVVAV PTS  KLSLRRSMFKY S
Sbjct: 539  DGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYES 598

Query: 1848 DNTELDVLSWSKFQPCFLNRQLITLLSTLGVQDQIFEKKQREILSQLDMILTDSQRALEA 2027
            +NT+LDVL+ SK+QPCFLNRQLITLLSTLGV D  FE+KQRE + QLD +LTD  RA EA
Sbjct: 599  ENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEA 658

Query: 2028 LEIMSPGENRNVLTEMLSCGYKPDAEPFLSMMLQTFRXXXXXXXXXXXRIYIPNGRSLMG 2207
            LE+MSPGEN N+L EML CGY+PDAEPFLSMMLQTFR           RI+IPNGRS+MG
Sbjct: 659  LELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 718

Query: 2208 CLDETRTLEYGEVFIQISHAG-RKQNGNGGLFASSWTGSHQRNRIVEGTVVVAKNPCLHP 2384
            CLDETRTLE+G+VF++ S +  R    +  +F+    G   +  +++G+VVVAKNPCLHP
Sbjct: 719  CLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRG---QCYLIKGSVVVAKNPCLHP 775

Query: 2385 GDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVSWDHELIPPREVE 2564
            GD+R+L+AV+ P LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +++ 
Sbjct: 776  GDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQIS 835

Query: 2565 PMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACREL 2744
            PMDYTP PP  +DHDV +EEV EYF NY+V+DSLG+IANAHTA ADKE   A S  C EL
Sbjct: 836  PMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVEL 895

Query: 2745 ARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHR 2924
            AR FSIAVDFPKTG PA+IP +L  +EYPDFMEKPDKP+YES+ VIGKLFREVKDI P  
Sbjct: 896  ARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRT 955

Query: 2925 SCIPSFTWEVAKRCYDQDMEVDGYAYYLDDAQQYKEKYDFKLGNLMDTYGIKTEADILAR 3104
            S I SFT +VA++CYD DMEVDG+  Y+DDA  YK  YD+KLGNLM+ YGIKTEA++L+ 
Sbjct: 956  SSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSG 1015

Query: 3105 GLVKESISYNRKKDADAIGEAVRSLRKEARKWFDEKG----SNSDDIYAKASAWYHVTYH 3272
              +K S S+ +K+DA+AIG AVRSL+KEAR WF+EKG    S +DD+ AKASAWYHVTYH
Sbjct: 1016 SFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYH 1075

Query: 3273 PNYWGAYNEGMKRDHYLSFPWCVHDKLIHIKRQKAKKVPE---YQSLEEQFRRGV 3428
             NYWG YNEGM RDH+LSFPWCV+DKLI IKR+ + ++       S+E QF RG+
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGL 1130


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1390 bits (3599), Expect = 0.0
 Identities = 705/1113 (63%), Positives = 852/1113 (76%), Gaps = 5/1113 (0%)
 Frame = +3

Query: 51   MGKTVNIHGFPTNISAEEVKIFLENLTGNGTVHALKVKPSQTAARNPRAFAIVQFTTTES 230
            MGKT+ ++G P+N+SA E+K FLE  TG GT+ AL++K  ++        A VQFT+   
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58

Query: 231  VERISSLINQRLLYGISRLKVWDMDRDIVPRPRASMLSLEITAMHFGNQVSPERFSVLWK 410
             E I SL  Q L YG + LK  +MD DI+P+PR  + S++   +HFG Q+S ERF VLWK
Sbjct: 59   AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117

Query: 411  GMGVVVNFEAGLRKMEFLFSYCRREYKLEFSYDSIWAIQLRCPPKQNKKFLVIQVSAAPR 590
             + V V F  GLRK  F  S+   EYKLE S ++IW IQLR P  QN KFL+IQ+  AP+
Sbjct: 118  AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177

Query: 591  IYEKGLASSGQTYNDLALTYFKDAIDDQWVRTTDFTTSCCIGQSSAVCLELPLTYIPRGI 770
            IYEK ++         AL+YFK+  DDQWVR  DFT SC IGQSSA+CLELP        
Sbjct: 178  IYEKDVS---------ALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNF 228

Query: 771  RENFYYYKEDEGHFYLENGSTFSRSLDLVPIVGPPQGLNLPYSTLFKINFLVQSGCLAGP 950
             ENF  YKE++  F LE+G++FS +L LVPIVGPPQG NLP+  LFKIN LVQ+GCL+GP
Sbjct: 229  CENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGP 288

Query: 951  TLDSAFYRLVNPQHVPSAHIEHALEKLRFSKECCYEPAKWLGELYKTYSRLKHFNKPSVS 1130
            TLD+ F+R V+PQ +  + IEHALEKL + +ECCYEP +WL E Y+TY   +    P++S
Sbjct: 289  TLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQVAGSPAIS 348

Query: 1131 LNDGVVFVRRVQITPLKVYFYGPEVIVSNRVLRDHHNLIDNFIRVSFVDEDGKKMWSTDL 1310
            L+ G+V+VRRVQITP KVYF GPEV VSNRVLR++   IDNF+RVSF+DE+ +K+ ST +
Sbjct: 349  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVI 408

Query: 1311 SPRTLPNEIKRHTDIYRRILSTLRNGITIGEKKFEFLAYSSSQLRESSVWMFASGNGVTA 1490
            SPR + NE +R T +YRRILS L+NGI IG+KKF+FLA SSSQLR++S WMFAS  G+TA
Sbjct: 409  SPR-MSNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTA 466

Query: 1491 DCIRDGMGDFREIRNVAKYAARLGQSFSSSKETLSVPREEMKIIPDVKTERNGVKYVFSD 1670
              IR  MGDF +IRNVAKYAARLGQSFSSSKETL V + E++IIPD++T R+G  YVFSD
Sbjct: 467  ADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSD 526

Query: 1671 GIGKISPKFAQKIAKKCGINGSSPSCFQIRYGGYKGVVAVAPTSGTKLSLRRSMFKYTSD 1850
            GIGKIS + A ++A KCG   S+PS FQIRYGGYKGVVAV PTS  KLSLR+SMFKY S+
Sbjct: 527  GIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESE 586

Query: 1851 NTELDVLSWSKFQPCFLNRQLITLLSTLGVQDQIFEKKQREILSQLDMILTDSQRALEAL 2030
            NT LDVLSWSK++PCFLNRQLITLLSTLGV+D +FEKKQRE + QLD IL D  RA EAL
Sbjct: 587  NTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEAL 646

Query: 2031 EIMSPGENRNVLTEMLSCGYKPDAEPFLSMMLQTFRXXXXXXXXXXXRIYIPNGRSLMGC 2210
            E+MSPGEN N+L EML CGYKPDAEPFLSMMLQTFR           RI++PNGRS+MGC
Sbjct: 647  ELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGC 706

Query: 2211 LDETRTLEYGEVFIQISHAGRKQN-GNGGLFASSWTGSHQRNRIVEGTVVVAKNPCLHPG 2387
            LDETRTLEYGEVF+QIS  G +Q+ G+  +F  S  GSH  N I+EG VVVAKNPCLHPG
Sbjct: 707  LDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGS--GSHHDNFILEGKVVVAKNPCLHPG 764

Query: 2388 DVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVSWDHELIPPREVEP 2567
            DVR+L AV+ P LHHMVDCVVFPQKG+RPHP+ECSGSDLDGDIYFV WDH+LIPPR++ P
Sbjct: 765  DVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINP 824

Query: 2568 MDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACRELA 2747
            MDYTPAP  ++DHDV +EEV EYF NY+ +D LGIIANAHT FADKE   A    C+ELA
Sbjct: 825  MDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELA 884

Query: 2748 RLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRS 2927
            +LFSIA++FPKTG PA+IP HL+VKEYPDFMEK +KPTYESQ VIGKLFREVKD+ PH  
Sbjct: 885  KLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNY 944

Query: 2928 CIPSFTWEVAKRCYDQDMEVDGYAYYLDDAQQYKEKYDFKLGNLMDTYGIKTEADILARG 3107
             + SFT +VA + YD DMEVDG+  Y+ DA  YK +YDFKLG+LMD  GI+TE++IL+  
Sbjct: 945  DVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGS 1004

Query: 3108 LVKESISYNRKKDADAIGEAVRSLRKEARKWFDEKGS----NSDDIYAKASAWYHVTYHP 3275
            ++K S S++++KDA+AI  AVRSLRKEAR WF++ GS     +DD+YA ASAWYHVTYHP
Sbjct: 1005 IMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHP 1064

Query: 3276 NYWGAYNEGMKRDHYLSFPWCVHDKLIHIKRQK 3374
             YWG YNEGM  DH+LSFPWCV+DKLI IKR K
Sbjct: 1065 YYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDK 1097


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1386 bits (3588), Expect = 0.0
 Identities = 694/1134 (61%), Positives = 859/1134 (75%), Gaps = 8/1134 (0%)
 Frame = +3

Query: 51   MGKTVNIHGFPTNISAEEVKIFLENLTGNGTVHALKVKPSQTAARNPRAFAIVQFTTTES 230
            MGKT+ ++GF +++SA EVK FLE  TG  TV+ALK++  +   ++ RAFAIVQFT +  
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57

Query: 231  VERISSLINQRLLYGISRLKVWDMDRDIVPRPRASMLSLEITAMHFGNQVSPERFSVLWK 410
               I  L NQRL YG S LK  +M+ DIVP+PR  + ++E   ++FG QVS E+F VLWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 411  GMGVVVNFEAGLRKMEFLFSYCRREYKLEFSYDSIWAIQLRCPPKQNKKFLVIQVSAAPR 590
               V +NF  G+RK+EFL SYC  +YKLE  Y++IW I+LRCP  Q  K L+IQ+  APR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 591  IYEKGLASSGQTYNDLALTYFKDAIDDQWVRTTDFTTSCCIGQSSAVCLELPLTYIPRGI 770
            IYEK + +S   ++D  L YFKD  DDQWVRTTDFT S CIGQSS + LELP        
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237

Query: 771  RENFYYYKEDEGHFYLENGSTFSRSLDLVPIVGPPQGLNLPYSTLFKINFLVQSGCLAGP 950
            RENF YYKE+EG   LE+GS++S +L LVPIV P + ++LP+  LFK+N LVQ+GC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 951  TLDSAFYRLVNPQHVPSAHIEHALEKLRFSKECCYEPAKWLGELYKTYSRLKHFN-KPSV 1127
             LD  FYRLV+P  +   +I+HALEKL + +ECCYEP++WL E YK +SR + +   P++
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 1128 SLNDGVVFVRRVQITPLKVYFYGPEVIVSNRVLRDHHNLIDNFIRVSFVDEDGKKMWSTD 1307
            SL++G+V+VRRVQITP +VYF GPE+ VSNRVLR  HN IDNF+R+SFVDE+ +K+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 1308 LSPRTLPNEIKRHTDIYRRILSTLRNGITIGEKKFEFLAYSSSQLRESSVWMFASGNGVT 1487
            +  R       R T IY+RILSTLRNGI IG K+FEFLA+SSSQLRE+S WMFAS  G+T
Sbjct: 418  VQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471

Query: 1488 ADCIRDGMGDFREIRNVAKYAARLGQSFSSSKETLSVPREEMKIIPDVKTERNGVKYVFS 1667
            A  IR  MG+F +IRNVAKYAARLGQSFSSS ETLSV ++E+ +IPD++  ++G+KYVFS
Sbjct: 472  AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531

Query: 1668 DGIGKISPKFAQKIAKKCGINGSSPSCFQIRYGGYKGVVAVAPTSGTKLSLRRSMFKYTS 1847
            DGIGKIS +FA+K+A KC + G +PS FQIR GG+KGVVA+ PTS  KLSLR+SM KY S
Sbjct: 532  DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591

Query: 1848 DNTELDVLSWSKFQPCFLNRQLITLLSTLGVQDQIFEKKQREILSQLDMILTDSQRALEA 2027
            +NT+LDVL+WSK+QPCFLNRQLITLLSTLGV D+ FEKKQRE++ QL+ +LTD   A EA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEA 651

Query: 2028 LEIMSPGENRNVLTEMLSCGYKPDAEPFLSMMLQTFRXXXXXXXXXXXRIYIPNGRSLMG 2207
            LE+MSPGEN N+L EML CGYKPDAEPFLSMML+TFR           RI++  GRS+MG
Sbjct: 652  LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711

Query: 2208 CLDETRTLEYGEVFIQISHAGRKQNGNGGLFASSWTGSHQRNR-IVEGTVVVAKNPCLHP 2384
            CLDETRTL YG+VF+Q S                  GS    R IV+G V+VAKNPCLHP
Sbjct: 712  CLDETRTLNYGQVFVQFS------------------GSRSERRFIVQGKVIVAKNPCLHP 753

Query: 2385 GDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVSWDHELIPPREVE 2564
            GDVRVLRAVN P LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP ++++
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 2565 PMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACREL 2744
            PMDY+PA    +DH+V +EE+ EYF NY+V+DSLGII+NAHTAFAD+E   A S  C EL
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLEL 873

Query: 2745 ARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHR 2924
            A+LFSIAVDFPKTG PA+IP  L VKEYPDFMEKPDKP+Y+S  VIGKLFREVK++ P+ 
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNE 933

Query: 2925 SCIPSFTWEVAKRCYDQDMEVDGYAYYLDDAQQYKEKYDFKLGNLMDTYGIKTEADILAR 3104
              I   T E  +R YD DMEV+G+  Y+DDA  +K KYD+KLGNLMD YG+KTEA+IL  
Sbjct: 934  CSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGG 993

Query: 3105 GLVKESISYNRKKDADAIGEAVRSLRKEARKWFDEKGS----NSDDIYAKASAWYHVTYH 3272
            G++K S S+ +K+DA+AI  AVRSLRKEAR WF+EKGS      DD YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 3273 PNYWGAYNEGMKRDHYLSFPWCVHDKLIHIKRQKA--KKVPEYQSLEEQFRRGV 3428
            P+YWG YNEGM RDH+LSFPWCV+DKLI IK++KA  ++  +  SLE +F+RG+
Sbjct: 1054 PSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGL 1107


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1383 bits (3580), Expect = 0.0
 Identities = 692/1133 (61%), Positives = 856/1133 (75%), Gaps = 8/1133 (0%)
 Frame = +3

Query: 51   MGKTVNIHGFPTNISAEEVKIFLENLTGNGTVHALKVKPSQTAARNPRAFAIVQFTTTES 230
            MGKT+ ++GF +++SA EVK FLE  TG  TV+ALK++  +   ++ RAFAIVQFT +  
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHK---KSGRAFAIVQFTRSSD 57

Query: 231  VERISSLINQRLLYGISRLKVWDMDRDIVPRPRASMLSLEITAMHFGNQVSPERFSVLWK 410
               I  L NQRL YG S LK  +M+ DIVP+PR  + ++E   ++F   VS E+F VLWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 411  GMGVVVNFEAGLRKMEFLFSYCRREYKLEFSYDSIWAIQLRCPPKQNKKFLVIQVSAAPR 590
               V +NF  G+RK+EFL SYC  +YKLE  Y++IW I+LRCP  Q  K L+IQ+  APR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 591  IYEKGLASSGQTYNDLALTYFKDAIDDQWVRTTDFTTSCCIGQSSAVCLELPLTYIPRGI 770
            IYEK + +S   ++D  L YFKD  DDQWVRTTDFT S CIGQSS +CLELP        
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237

Query: 771  RENFYYYKEDEGHFYLENGSTFSRSLDLVPIVGPPQGLNLPYSTLFKINFLVQSGCLAGP 950
            RENF YYKE+EG   LE+GS++S +L LVPIV P + ++LP+  LFK+N LVQ+GC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 951  TLDSAFYRLVNPQHVPSAHIEHALEKLRFSKECCYEPAKWLGELYKTYSRLKHFN-KPSV 1127
             LD  FYRLV+P  +   +I+HALEKL + +ECCYEP++WL E YK +SR + +   P++
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 1128 SLNDGVVFVRRVQITPLKVYFYGPEVIVSNRVLRDHHNLIDNFIRVSFVDEDGKKMWSTD 1307
            SL++G+V+VRRVQITP +VYF GPE+ VSNRVLR  HN IDNF+R+SFVDE+ +K+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 1308 LSPRTLPNEIKRHTDIYRRILSTLRNGITIGEKKFEFLAYSSSQLRESSVWMFASGNGVT 1487
            +  R       R T IY+RILSTLRNGI IG K+FEFLA+SSSQLRE+S WMFAS  G+T
Sbjct: 418  VQARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471

Query: 1488 ADCIRDGMGDFREIRNVAKYAARLGQSFSSSKETLSVPREEMKIIPDVKTERNGVKYVFS 1667
            A  IR  MG+F +IRNVAKYAARLGQSFSSS ETLSV ++E+ +IPD++  ++G+KYVF 
Sbjct: 472  AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFP 531

Query: 1668 DGIGKISPKFAQKIAKKCGINGSSPSCFQIRYGGYKGVVAVAPTSGTKLSLRRSMFKYTS 1847
            DGIGKIS +FA+K+A KC + G +PS FQIR GG+KGVVA+ PTS  KLSLR+SM KY S
Sbjct: 532  DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591

Query: 1848 DNTELDVLSWSKFQPCFLNRQLITLLSTLGVQDQIFEKKQREILSQLDMILTDSQRALEA 2027
            +NT+LDVL+WSK+QPCFLNRQLITLLSTLGV D  FEKKQRE++ QL+ +LTD   A EA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEA 651

Query: 2028 LEIMSPGENRNVLTEMLSCGYKPDAEPFLSMMLQTFRXXXXXXXXXXXRIYIPNGRSLMG 2207
            LE+MSPGEN N+L EML CGYKPDAEPFLSMML+TFR           RI++  GRS+MG
Sbjct: 652  LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711

Query: 2208 CLDETRTLEYGEVFIQISHAGRKQNGNGGLFASSWTGSHQRNR-IVEGTVVVAKNPCLHP 2384
            CLDETRTL YG+VF+Q S                  GS    R IV+G V+VAKNPCLHP
Sbjct: 712  CLDETRTLNYGQVFVQFS------------------GSRSERRFIVQGKVIVAKNPCLHP 753

Query: 2385 GDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVSWDHELIPPREVE 2564
            GDVRVLRAVN P LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP ++++
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 2565 PMDYTPAPPAIVDHDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQGMAESVACREL 2744
            PMDY+PA    +DH+V +EE+ EYF NY+V+DSLGII+NAHTAFAD+E G A S  C EL
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLEL 873

Query: 2745 ARLFSIAVDFPKTGAPAKIPPHLYVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHR 2924
            A+LFSIAVDFPKTG PA+IP  L VKE+PDFMEKPDKP+Y+S  VIGKLFREVK++ P+ 
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNE 933

Query: 2925 SCIPSFTWEVAKRCYDQDMEVDGYAYYLDDAQQYKEKYDFKLGNLMDTYGIKTEADILAR 3104
              I   T E  KR YD DMEV+G+  Y+DDA  YK KYD+KLGNLMD YG+KTEA+IL+ 
Sbjct: 934  CSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSG 993

Query: 3105 GLVKESISYNRKKDADAIGEAVRSLRKEARKWFDEKGS----NSDDIYAKASAWYHVTYH 3272
            G++K S S+ +K+DA++I  AVRSLRKEAR WF+EKGS      DD YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 3273 PNYWGAYNEGMKRDHYLSFPWCVHDKLIHIKRQKA--KKVPEYQSLEEQFRRG 3425
             +YWG YNEGM RDH+LSFPWCV+DKLI IK++KA  ++  +  SLE +F+RG
Sbjct: 1054 HSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRG 1106