BLASTX nr result
ID: Coptis21_contig00001949
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00001949
(1743 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containin... 352 1e-94
ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containin... 351 4e-94
ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containin... 345 2e-92
ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containin... 344 5e-92
ref|XP_002318105.1| predicted protein [Populus trichocarpa] gi|2... 341 3e-91
>ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1
[Vitis vinifera] gi|297733636|emb|CBI14883.3| unnamed
protein product [Vitis vinifera]
Length = 484
Score = 352 bits (904), Expect = 1e-94
Identities = 177/343 (51%), Positives = 223/343 (65%), Gaps = 9/343 (2%)
Frame = -3
Query: 1450 YPLRPEEPDCVFYVRTGSCGFGSNCKFNHPLPHPKHSKAPKVLKTSLSGDSDESQQXXXX 1271
YP+RP+ DC FY+RTG+C FGSNCKFNHP+ K+ A + +K + E
Sbjct: 126 YPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRR-KNQVAKEKVKEKEKEEFPERP----- 179
Query: 1270 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 1091
GQ ECKYYLR+GGCKFGKACRY H + K P E NFLGLPIR GE+ECP
Sbjct: 180 --------GQTECKYYLRTGGCKFGKACRYNHTKAKPSAVPVLELNFLGLPIRMGEKECP 231
Query: 1090 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSG---PLYSSIDSQPAVASWSLPRPS 920
+YMRTGSCK+ +NCRFNHPDPTA G +G +G PL + SQ +ASWS PR
Sbjct: 232 YYMRTGSCKYGANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGA--SQSNMASWSSPRAL 289
Query: 919 ADTVPYSETSRSYVPVMMAP-QGA-HSGLEWNGYQAPLSPLYPLEGTLRPAVASSMNGSI 746
+ P +VP+M +P QG EWNGYQAPL P P E ++ P A +N +
Sbjct: 290 NEPAP-------FVPIMFSPTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPAFVINNTA 342
Query: 745 KSTDVYLPHLQQMP--VDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--N 578
+VY H QQ +++FPERPGQ EC Y++KTGDCKF+++C+YHHPK R+ KSP
Sbjct: 343 TDANVYGHHQQQQQSLIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCT 402
Query: 577 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGS 449
LS GLPLRPDQ +C+H++RYGICK+G ACK+DH N+G+S S
Sbjct: 403 LSDKGLPLRPDQNICTHYNRYGICKFGPACKFDHPVNYGNSAS 445
Score = 71.2 bits (173), Expect = 8e-10
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Frame = -3
Query: 766 SSMNGSIKSTDVYLPHLQQMPVD-----------EFPERPGQQECQYYIKTGDCKFKSSC 620
S NG +K++D + + + ++P RP +C +Y++TG CKF S+C
Sbjct: 91 SDSNGEVKASDDEEEQCENLEDESAAKDDKSARFQYPVRPDAVDCSFYLRTGTCKFGSNC 150
Query: 619 RYHHPKARVS-----KSPNLSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHS 473
+++HP R + K P RP Q C ++ R G CK+G AC+Y+H+
Sbjct: 151 KFNHPIRRKNQVAKEKVKEKEKEEFPERPGQTECKYYLRTGGCKFGKACRYNHT 204
>ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 490
Score = 351 bits (900), Expect = 4e-94
Identities = 182/367 (49%), Positives = 232/367 (63%), Gaps = 9/367 (2%)
Frame = -3
Query: 1456 YFYPLRPEEPDCVFYVRTGSCGFGSNCKFNHPLPHPKHSKAPKVLKTSLSGDSDESQQXX 1277
+ YPLRPE DC FY++TG+C FG NCKFNHP+ + K +G+ +E+ +
Sbjct: 138 HHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIKRKSQAVKEK------AGEREETTERS 191
Query: 1276 XXXXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREK--SVVGPPAEFNFLGLPIRPGE 1103
G ECKYY RSGGCKFGK+C+Y H R K + P E NFLGLPIRPGE
Sbjct: 192 ----------GMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRPGE 241
Query: 1102 RECPFYMRTGSCKFASNCRFNHPDPTAGGADSGDNGT---SSGPLYSSIDSQPAVASWSL 932
RECP+YMRTGSCKF +NC+FNHPDPTA G G+ + + G + SQ +V SWS
Sbjct: 242 RECPYYMRTGSCKFGANCKFNHPDPTAVGGGGGNPPSGYGNGGSISLQGVSQTSVPSWSS 301
Query: 931 PRPSADTVPYSETSRSYVPVMMAP-QGAHS-GLEWNGYQAPLSPLYPLEGTLRPAVASSM 758
PR + P+ VP+M++P QG + +WNGYQA + Y E ++ P M
Sbjct: 302 PRTLNEASPF-------VPMMLSPTQGVSTQSSDWNGYQASV---YLPERSIHPPSTFVM 351
Query: 757 NGSIKSTDVYLPHLQQMPVDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP- 581
N T+VY+ H +QMPVDEFPERPG+ EC +++KTGDCKFKS+C++HHPK RV++ P
Sbjct: 352 NNPAIDTNVYMHHQKQMPVDEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVTRLPP 411
Query: 580 -NLSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIPPS 404
NLS GLPLRPDQ VCSH+SRYGICK+G ACK+DH N PV+ Q S
Sbjct: 412 CNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINL----QPVMIPGLEQQSYSNS 467
Query: 403 ATSGGAG 383
A++G AG
Sbjct: 468 ASAGVAG 474
>ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 570
Score = 345 bits (885), Expect = 2e-92
Identities = 174/347 (50%), Positives = 221/347 (63%), Gaps = 8/347 (2%)
Frame = -3
Query: 1450 YPLRPEEPDCVFYVRTGSCGFGSNCKFNHPLPHPKHSKAPKVLKTSLSGDSDESQQXXXX 1271
YPLRPE DC FY++TG+C FG NCKFNHPL +K +G+ +E +
Sbjct: 230 YPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKEN------AGEREEQAERS-- 281
Query: 1270 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 1091
GQ+ECKYYLRSGGCKFGKAC++ H R KS E NFLGLPIR GE+EC
Sbjct: 282 --------GQMECKYYLRSGGCKFGKACKFNHTRGKSSSASATELNFLGLPIRVGEKECL 333
Query: 1090 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSGPLYSSID----SQPAVASWSLPRP 923
+YMRTGSCKF +NCRFNHPDPT G +G +G SSI SQ +++SWS RP
Sbjct: 334 YYMRTGSCKFGANCRFNHPDPTTVGGGDSPSGYGNG---SSISLQGVSQSSISSWSSTRP 390
Query: 922 SADTVPYSETSRSYVPVMMAPQGAHS--GLEWNGYQAPLSPLYPLEGTLRPAVASSMNGS 749
++ P +VPV+++P S EWNGYQA P+Y E +L P MN
Sbjct: 391 LNESAP-------FVPVILSPNPGVSPQSSEWNGYQA---PVYLSERSLHPPSTYVMNNP 440
Query: 748 IKSTDVYLPHLQQMPVDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--NL 575
++VY+ H +QM V+EFPERPG+ EC Y++KTGDCKFKS+C++HHPK R+++ P NL
Sbjct: 441 AMESNVYMHHQKQMLVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPLCNL 500
Query: 574 SPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVST 434
S GLPLRPDQ VC+++ RYGICK+G ACK+DH +G ST
Sbjct: 501 SDKGLPLRPDQNVCTYYRRYGICKFGPACKFDHPAPSTMAGHDQQST 547
Score = 69.7 bits (169), Expect = 2e-09
Identities = 35/108 (32%), Positives = 53/108 (49%)
Frame = -3
Query: 1450 YPLRPEEPDCVFYVRTGSCGFGSNCKFNHPLPHPKHSKAPKVLKTSLSGDSDESQQXXXX 1271
+P RP EP+C ++++TG C F SNCKF+HP ++ + L SD+
Sbjct: 459 FPERPGEPECSYFLKTGDCKFKSNCKFHHP--------KNRIARLPLCNLSDKG------ 504
Query: 1270 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFL 1127
Q C YY R G CKFG AC++ HP ++ G + ++
Sbjct: 505 ---LPLRPDQNVCTYYRRYGICKFGPACKFDHPAPSTMAGHDQQSTYI 549
Score = 68.6 bits (166), Expect = 5e-09
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = -3
Query: 697 EFPERPGQQECQYYIKTGDCKFKSSCRYHHPKAR--VSKSPNLSPLGLPL-RPDQLVCSH 527
++P RP ++C +Y+KTG CKF +C+++HP R +K N R Q+ C +
Sbjct: 229 QYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKENAGEREEQAERSGQMECKY 288
Query: 526 FSRYGICKYGAACKYDHSPNHGSSGS 449
+ R G CK+G ACK++H+ SS S
Sbjct: 289 YLRSGGCKFGKACKFNHTRGKSSSAS 314
>ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 501
Score = 344 bits (882), Expect = 5e-92
Identities = 174/337 (51%), Positives = 219/337 (64%), Gaps = 9/337 (2%)
Frame = -3
Query: 1450 YPLRPEEPDCVFYVRTGSCGFGSNCKFNHPLPHPKHSKAPKVLKTSLSGDSDESQQXXXX 1271
YPLRPE DC FY++TG+C FG NCKFNHP+ + K +G+ +E+ +
Sbjct: 150 YPLRPEAEDCAFYIKTGNCKFGFNCKFNHPIRRKSQAVKEK------AGEREETTERS-- 201
Query: 1270 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREK--SVVGPPAEFNFLGLPIRPGERE 1097
G ECKYY RSGGCKFGK+C+Y H R K + P E NFLGLPIR GERE
Sbjct: 202 --------GMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRLGERE 253
Query: 1096 CPFYMRTGSCKFASNCRFNHPDPTAGGADSGDNGT---SSGPLYSSIDSQPAVASWSLPR 926
CP+YMRTGSCKF +NC+FNHPDPTA G GD + + G + SQ +V SWS PR
Sbjct: 254 CPYYMRTGSCKFGANCKFNHPDPTAVGGVGGDPASGYGNGGSISLQGVSQTSVPSWSSPR 313
Query: 925 PSADTVPYSETSRSYVPVMMAP-QGAHS-GLEWNGYQAPLSPLYPLEGTLRPAVASSMNG 752
++ P+ VP+M++P QG + +WNGYQA + Y E + P MN
Sbjct: 314 TLNESSPF-------VPMMLSPTQGVSTQSSDWNGYQASV---YLPERNMHPPSTFVMNN 363
Query: 751 SIKSTDVYLPHLQQMPVDEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--N 578
T+VY+ H +QMPVDEFPERPG+ EC Y++KTGDCKFKS+C+++HPK RV++ P N
Sbjct: 364 PAIDTNVYMHHQKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRVARLPPCN 423
Query: 577 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPN 467
LS GLPLRPDQ VCSH+SRYGICK+G ACK+DH N
Sbjct: 424 LSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPIN 460
>ref|XP_002318105.1| predicted protein [Populus trichocarpa] gi|222858778|gb|EEE96325.1|
predicted protein [Populus trichocarpa]
Length = 477
Score = 341 bits (875), Expect = 3e-91
Identities = 192/436 (44%), Positives = 252/436 (57%), Gaps = 36/436 (8%)
Frame = -3
Query: 1654 DDPH-----SNELDLKE------ETFCEQQQSDDDIVVIEKIETL------------ELE 1544
DD H N+LDLKE ++ E+++ +++ +KIE +LE
Sbjct: 44 DDNHLHQELQNQLDLKEGSLNSNDSHEEEEEEEEEFKSDKKIEFFYESIEKVGDGGDDLE 103
Query: 1543 DKNETSSXXXXXXXXXXXXXXXXXXGTVGYF-YPLRPEEPDCVFYVRTGSCGFGSNCKFN 1367
+KNE S+ + GY YP+RPE DC FY++TG+C FG+NCKFN
Sbjct: 104 NKNERSNDIENNN-------------SSGYHQYPVRPEAEDCAFYMKTGTCKFGANCKFN 150
Query: 1366 HPLPHPKHSKAPKVLKTSLSGDSDESQQXXXXXXXXXXXVGQLECKYYLRSGGCKFGKAC 1187
HPL + KT ++ E +ECKYYL++GGCK+G AC
Sbjct: 151 HPLRRKNQVQLTVKEKTKEREEATEKPSL-------------IECKYYLKTGGCKYGTAC 197
Query: 1186 RYRHPREKSVVGP------PA-EFNFLGLPIRPGERECPFYMRTGSCKFASNCRFNHPDP 1028
R+ H R K V P PA E NFLGLPIR GE+EC ++MR GSCKF +NC++NHPDP
Sbjct: 198 RFNHSRAKYSVPPVKIPMSPALELNFLGLPIRLGEKECEYFMRNGSCKFGANCKYNHPDP 257
Query: 1027 TA-GGADSGDNGTSSGPLYSSIDSQPAVASWSLPRPSADTVPYSETSRSYVPVMMAP-QG 854
TA GG+D + G + S +V SWS PR D S+VP+M +P QG
Sbjct: 258 TAVGGSDHPSTFLNGGSASLPVPSSSSVGSWSSPRALNDPT-------SFVPIMFSPNQG 310
Query: 853 AH-SGLEWNGYQAPLSPLYPLEGTLRPAVASSMNGSIKSTDVYLPHLQQMPVDEFPERPG 677
+WNGYQAPL YP E +L P ++ ++ ++VY P QQ+ VDEFPERPG
Sbjct: 311 VPPQSPDWNGYQAPL---YPPERSLHPPLSYALINIATESNVYAPQQQQIVVDEFPERPG 367
Query: 676 QQECQYYIKTGDCKFKSSCRYHHPKARVSKSP--NLSPLGLPLRPDQLVCSHFSRYGICK 503
Q +C +Y+K GDCKFKS+C+YHHPK R+SKSP LS GLPLRPDQ +CSH+SRYGICK
Sbjct: 368 QPQCSFYMKFGDCKFKSNCKYHHPKNRISKSPPLTLSDKGLPLRPDQNICSHYSRYGICK 427
Query: 502 YGAACKYDHSPNHGSS 455
+G +CK+DHS SS
Sbjct: 428 FGPSCKFDHSIQPASS 443
Score = 83.2 bits (204), Expect = 2e-13
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 23/123 (18%)
Frame = -3
Query: 700 DEFPERPGQQECQYYIKTGDCKFKSSCRYHHPKARVSKSP---------NLSPLGLPLRP 548
+E E+P EC+YY+KTG CK+ ++CR++H +A+ S P L+ LGLP+R
Sbjct: 171 EEATEKPSLIECKYYLKTGGCKYGTACRFNHSRAKYSVPPVKIPMSPALELNFLGLPIRL 230
Query: 547 DQLVCSHFSRYGICKYGAACKYDHSP--------------NHGSSGSPVVSTAAPPQYIP 410
+ C +F R G CK+GA CKY+H N GS+ PV S+++ +
Sbjct: 231 GEKECEYFMRNGSCKFGANCKYNHPDPTAVGGSDHPSTFLNGGSASLPVPSSSSVGSWSS 290
Query: 409 PSA 401
P A
Sbjct: 291 PRA 293
Score = 80.9 bits (198), Expect = 1e-12
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Frame = -3
Query: 1372 FNHPLPHPKHSKAPKVLKTSLSGDSDES-----QQXXXXXXXXXXXVGQLECKYYLRSGG 1208
+ PL P+ S P L +L + ES QQ GQ +C +Y++ G
Sbjct: 321 YQAPLYPPERSLHPP-LSYALINIATESNVYAPQQQQIVVDEFPERPGQPQCSFYMKFGD 379
Query: 1207 CKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECPFYMRTGSCKFASNCRFNHP-D 1031
CKF C+Y HP+ + PP + GLP+RP + C Y R G CKF +C+F+H
Sbjct: 380 CKFKSNCKYHHPKNRISKSPPLTLSDKGLPLRPDQNICSHYSRYGICKFGPSCKFDHSIQ 439
Query: 1030 PTAGGADSGDNGTSSG 983
P + S D T+ G
Sbjct: 440 PASSIGSSDDQNTAFG 455