BLASTX nr result

ID: Coptis21_contig00001881 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001881
         (1737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271163.1| PREDICTED: uncharacterized protein LOC100256...   447   e-123
emb|CAN70194.1| hypothetical protein VITISV_004002 [Vitis vinifera]   434   e-119
ref|XP_002320480.1| predicted protein [Populus trichocarpa] gi|2...   434   e-119
ref|XP_002883706.1| integral membrane family protein [Arabidopsi...   414   e-113
gb|AAM63171.1| unknown [Arabidopsis thaliana]                         410   e-112

>ref|XP_002271163.1| PREDICTED: uncharacterized protein LOC100256852 [Vitis vinifera]
            gi|297739206|emb|CBI28857.3| unnamed protein product
            [Vitis vinifera]
          Length = 390

 Score =  447 bits (1151), Expect = e-123
 Identities = 226/346 (65%), Positives = 274/346 (79%)
 Frame = -3

Query: 1459 INIFSLPYTRRNPREEMKKLAETDVSFFYPFVLWMWSGSKYSGSLCVAVSASIYCIMHVL 1280
            INIFS+ Y+RR PRE++ K AE D SF   F+LW WSGS+ SG LC+A+S++IYCIM  L
Sbjct: 48   INIFSVSYSRRKPREQVTKSAE-DASFTQ-FILWAWSGSRCSGLLCMALSSTIYCIMEAL 105

Query: 1279 SETFSAQSIPSFESVFTRCTIILILSFVWLKRVGQPIFGPTHARRLLFLRALMGFLSLFS 1100
            S+ FSAQSIP FE+ FTRCT+ LILS+ WL+R GQPIFGPTH R LL  RALMG+LSL S
Sbjct: 106  SDIFSAQSIPLFETAFTRCTVTLILSYFWLRRSGQPIFGPTHVRSLLVSRALMGYLSLLS 165

Query: 1099 FIYSVRSLPLSQAIVLNFTTPIMASIAARIFLQEKLKLTDVGGLACSFFGLLFIFRPMLI 920
            F+Y ++ LPLSQA+VL+FTTPIMASI ARI L EKL + ++GGLACSF G+LFIFRP+L 
Sbjct: 166  FVYCIQRLPLSQAVVLSFTTPIMASIMARIILHEKLNIAEIGGLACSFIGVLFIFRPILA 225

Query: 919  TQGRSTEIGDASVKYVARINHPVFAVCVGLFSSITGGISDCLIRSAAKASDQSVTTVFSF 740
             QG   +  +A+  YV   +H ++AV VGL SSI+GGIS CL R+ AKASDQ V TVF+F
Sbjct: 226  AQGGLPKAEEANNIYVGGSDH-IYAVLVGLVSSISGGISYCLTRAGAKASDQPVITVFAF 284

Query: 739  SVLACPAAAICTYAFQDFVLPNFYSFFLMIVLGVLSFFAEVFLARGLQLEKTSRVANIQY 560
             +L  PAAAICT+AFQDFVLP+FYSFFLM++L VL+FFAEVFLARGLQLEKTS+  NIQY
Sbjct: 285  GMLGSPAAAICTFAFQDFVLPSFYSFFLMVILAVLAFFAEVFLARGLQLEKTSKATNIQY 344

Query: 559  IEVALLQVWSISIARAAPSFGRLAGCLLIFVSVSGTMYFGREKEVE 422
            IE AL Q+W +  ++ APSFGRL GC LIF S   TMYFG +KE+E
Sbjct: 345  IEAALSQLWGLGSSKIAPSFGRLVGCFLIFASTCCTMYFGPDKEME 390


>emb|CAN70194.1| hypothetical protein VITISV_004002 [Vitis vinifera]
          Length = 413

 Score =  434 bits (1117), Expect = e-119
 Identities = 226/369 (61%), Positives = 274/369 (74%), Gaps = 23/369 (6%)
 Frame = -3

Query: 1459 INIFSLPYTRRNPREEMKKLAETDVSFFYPFVLWMWSGSKYSGSLCVAVSASIYCIMHVL 1280
            INIFS+ Y+RR PRE++ K AE D SF   F+LW WSGS+ SG LC+A+S++IYCIM  L
Sbjct: 48   INIFSVSYSRRKPREQVTKSAE-DASFTQ-FILWAWSGSRCSGLLCMALSSTIYCIMEAL 105

Query: 1279 SETFSAQSIPSFESVFTRCTIILILSFVWLKRVGQPIFGPTHARRLLFLRALMGFLSLFS 1100
            S+ FSAQSIP FE+ FTRCT+ LILS+ WL+R GQPIFGPTH R LL  RALMG+LSL S
Sbjct: 106  SDIFSAQSIPLFETAFTRCTVTLILSYFWLRRSGQPIFGPTHVRSLLVSRALMGYLSLLS 165

Query: 1099 FIYSVRSLPLSQAIVLNFTTPIMASIAARIFLQEKLKLTDVG------------------ 974
            F+Y ++ LPLSQA+VL+FTTPIMASI ARI L EKL + ++G                  
Sbjct: 166  FVYCIQRLPLSQAVVLSFTTPIMASIMARIILHEKLNIAEIGELYTYFCEAGGETDCFVB 225

Query: 973  -----GLACSFFGLLFIFRPMLITQGRSTEIGDASVKYVARINHPVFAVCVGLFSSITGG 809
                 GLACSF G+LFIFRP+L  QG   +  +A+  YV   +H ++AV VGL SSI+GG
Sbjct: 226  CIYFPGLACSFIGVLFIFRPILAAQGGLPKAEEANNIYVGGSDH-IYAVLVGLVSSISGG 284

Query: 808  ISDCLIRSAAKASDQSVTTVFSFSVLACPAAAICTYAFQDFVLPNFYSFFLMIVLGVLSF 629
            IS CL R+ AKASDQ V TVF+F +L  PAAAICT+AFQDFVLP+FYSFFLM++L VL+F
Sbjct: 285  ISYCLTRAGAKASDQPVITVFAFGMLGSPAAAICTFAFQDFVLPSFYSFFLMVILAVLAF 344

Query: 628  FAEVFLARGLQLEKTSRVANIQYIEVALLQVWSISIARAAPSFGRLAGCLLIFVSVSGTM 449
            FAEVFLARGLQLEKTS+  NIQYIE AL Q+W +  ++ APSFGRL GC LIF S   TM
Sbjct: 345  FAEVFLARGLQLEKTSKATNIQYIEAALSQLWGLGSSKIAPSFGRLVGCFLIFASTCCTM 404

Query: 448  YFGREKEVE 422
            YFG +KE+E
Sbjct: 405  YFGPDKEME 413


>ref|XP_002320480.1| predicted protein [Populus trichocarpa] gi|222861253|gb|EEE98795.1|
            predicted protein [Populus trichocarpa]
          Length = 393

 Score =  434 bits (1115), Expect = e-119
 Identities = 218/346 (63%), Positives = 266/346 (76%)
 Frame = -3

Query: 1459 INIFSLPYTRRNPREEMKKLAETDVSFFYPFVLWMWSGSKYSGSLCVAVSASIYCIMHVL 1280
            INIFS+ ++RR PRE+  K+ + +      FVLW+W GS+YSG LCVA+S++IY +M VL
Sbjct: 49   INIFSVSHSRRKPREQGTKIPDIETFPVTQFVLWIWGGSRYSGLLCVAISSTIYFVMEVL 108

Query: 1279 SETFSAQSIPSFESVFTRCTIILILSFVWLKRVGQPIFGPTHARRLLFLRALMGFLSLFS 1100
            S+ FSAQSIP FE+ F RCTI LILS++WL+  GQPIFGP HAR+ LF RAL G LSL S
Sbjct: 109  SDFFSAQSIPLFETAFARCTITLILSYLWLRGNGQPIFGPAHARKFLFSRALTGCLSLLS 168

Query: 1099 FIYSVRSLPLSQAIVLNFTTPIMASIAARIFLQEKLKLTDVGGLACSFFGLLFIFRPMLI 920
            FIY +R LPLSQAIVL+FTTPIMASI ARI L EKLK+ DVGGLACSFFG+LFIFR +L 
Sbjct: 169  FIYCIRRLPLSQAIVLSFTTPIMASIVARIILHEKLKIVDVGGLACSFFGVLFIFRQILT 228

Query: 919  TQGRSTEIGDASVKYVARINHPVFAVCVGLFSSITGGISDCLIRSAAKASDQSVTTVFSF 740
            TQG    +G+ +   +   NH V  V V LFSSITGGIS CL+++ AKASDQ + TVFSF
Sbjct: 229  TQGALLRVGETNYIAIMGRNH-VLTVLVALFSSITGGISYCLVKAGAKASDQPLATVFSF 287

Query: 739  SVLACPAAAICTYAFQDFVLPNFYSFFLMIVLGVLSFFAEVFLARGLQLEKTSRVANIQY 560
             +LA PA  +C +AF++FVLPNFY+FFLM++LG+LSF AEVF ARGLQLEKTS+ AN+ Y
Sbjct: 288  GILATPATGMCAFAFEEFVLPNFYTFFLMLILGLLSFSAEVFFARGLQLEKTSKAANVLY 347

Query: 559  IEVALLQVWSISIARAAPSFGRLAGCLLIFVSVSGTMYFGREKEVE 422
            +EVAL Q+W I   R  PSFG L GCLLI +SV  T+Y G EKE+E
Sbjct: 348  MEVALSQLWGIGSWRITPSFGGLVGCLLILISVCCTIYIGPEKEME 393


>ref|XP_002883706.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297329546|gb|EFH59965.1| integral membrane family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 401

 Score =  414 bits (1065), Expect = e-113
 Identities = 217/390 (55%), Positives = 279/390 (71%), Gaps = 2/390 (0%)
 Frame = -3

Query: 1585 HLVIEMISQTNDETVVLSSSSEDEEITXXXXXXXXXXXXXXRINIFSLPYTRRNPREEMK 1406
            HL +E+  + + E+  L  +S   E +              RINIFS  YTR  PRE++ 
Sbjct: 14   HLALELTVR-DLESPALEDASSAPESSSDEIIPLLNQNQRPRINIFSASYTRHKPREQVI 72

Query: 1405 KLAETDVSFFYPFVLWMWSGSKYSGSLCVAVSASIYCIMHVLSETFSAQSIPSFESVFTR 1226
            K+ ET++S    F  W+WSGS+YSG LC+ +S+++Y IM ++S+TFS Q IP FE+ F R
Sbjct: 73   KVTETEISPVTQFSSWIWSGSRYSGLLCMVLSSTLYLIMELVSDTFSVQPIPLFETAFMR 132

Query: 1225 CTIILILSFVWLKRVGQPIFGPTHARRLLFLRALMGFLSLFSFIYSVRSLPLSQAIVLNF 1046
            CTIILILS++WLKR+GQPIFGP HAR+LL  RAL+G+LSLFSFI+S++ LPLSQAIVL+F
Sbjct: 133  CTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSF 192

Query: 1045 TTPIMASIAARIFLQEKLKLTDVGGLACSFFGLLFIFRPMLITQGRSTEIGDASVKYVAR 866
              PIMASIAAR+ + EKLK+TD+GGLACSFFG+LFIF P L  Q     +G        +
Sbjct: 193  LNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQ-----VGSEGTNENLK 247

Query: 865  INHPVFAVCVGLFSSITGGISDCLIRSAAKASDQSVTTVFSFSVLACPAAAICTYAFQDF 686
             NH ++A  +GLFSSITGGI+ CLI++AAKAS+Q V TVFSF ++ACPAAAIC ++F+ F
Sbjct: 248  GNHHIYAFWLGLFSSITGGITYCLIKAAAKASEQPVITVFSFGLVACPAAAICMFSFESF 307

Query: 685  VLPNFYSFFLMIVLGVLSFFAEVFLARGLQLEKTSRVANIQYIEVALLQVWSISIARAAP 506
            VLP F +   MIVLG+L+F AEV LARGLQLEK S+ ANI YIEV L Q+W +S  +A  
Sbjct: 308  VLPAFDTLITMIVLGLLAFCAEVLLARGLQLEKISKAANILYIEVVLSQLWIVSTGKAGS 367

Query: 505  S--FGRLAGCLLIFVSVSGTMYFGREKEVE 422
               F RL GCLLI +SVS T+Y G  K+ E
Sbjct: 368  PGLFSRLVGCLLILISVSYTVYMGPAKDTE 397


>gb|AAM63171.1| unknown [Arabidopsis thaliana]
          Length = 401

 Score =  410 bits (1054), Expect = e-112
 Identities = 215/390 (55%), Positives = 279/390 (71%), Gaps = 2/390 (0%)
 Frame = -3

Query: 1585 HLVIEMISQTNDETVVLSSSSEDEEITXXXXXXXXXXXXXXRINIFSLPYTRRNPREEMK 1406
            HL +E+  + + E+  L S+S   E++              RINIFS  YTRR PRE++ 
Sbjct: 14   HLSLELTVR-DLESPALESASSAPELSSDEIIPLLNQNQRPRINIFSASYTRRKPREQVI 72

Query: 1405 KLAETDVSFFYPFVLWMWSGSKYSGSLCVAVSASIYCIMHVLSETFSAQSIPSFESVFTR 1226
            K+ ET++S    F  W+WSGS+YSG LC+A+S+++Y IM ++S+TFS Q IP FE+ F R
Sbjct: 73   KVTETEISPLTQFSSWIWSGSRYSGLLCMALSSTLYLIMELVSDTFSVQPIPLFETAFMR 132

Query: 1225 CTIILILSFVWLKRVGQPIFGPTHARRLLFLRALMGFLSLFSFIYSVRSLPLSQAIVLNF 1046
            CTIILILS++WLKR+GQPIFGP HAR+LL  RAL+G+LSLFSFI+S++ LPLSQAIVL+F
Sbjct: 133  CTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSF 192

Query: 1045 TTPIMASIAARIFLQEKLKLTDVGGLACSFFGLLFIFRPMLITQGRSTEIGDASVKYVAR 866
              PIMASIAAR+ + EKLK+TD+GGLACSFFG+LFIF P L  Q     +G        +
Sbjct: 193  LNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQ-----VGLEGKNENLK 247

Query: 865  INHPVFAVCVGLFSSITGGISDCLIRSAAKASDQSVTTVFSFSVLACPAAAICTYAFQDF 686
             NH ++A  +GLFSSITGGI+ CLI++AAKAS+Q V TV SF ++ACPA AIC ++F+ F
Sbjct: 248  ENHHIYAFLLGLFSSITGGITYCLIKAAAKASEQPVITVLSFGLVACPATAICMFSFESF 307

Query: 685  VLPNFYSFFLMIVLGVLSFFAEVFLARGLQLEKTSRVANIQYIEVALLQVWSISIARAAP 506
            VLP F +   MIVLG+L+F AEV LARGLQLEK S+ AN+ YIEV L Q+W +S  +   
Sbjct: 308  VLPAFDTLVSMIVLGLLAFCAEVLLARGLQLEKISKAANVLYIEVVLSQLWLVSTGKTGS 367

Query: 505  S--FGRLAGCLLIFVSVSGTMYFGREKEVE 422
               F RL GCLLI +SV  T+Y G  K+ E
Sbjct: 368  PGLFSRLVGCLLILLSVGYTVYIGPAKDTE 397


Top