BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001796
         (1873 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530460.1| transcription cofactor, putative [Ricinus co...   249   1e-63
gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]                  249   2e-63
ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II tra...   237   9e-60
ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana] ...   196   1e-47
ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arab...   194   7e-47

>ref|XP_002530460.1| transcription cofactor, putative [Ricinus communis]
            gi|223530005|gb|EEF31930.1| transcription cofactor,
            putative [Ricinus communis]
          Length = 1382

 Score =  249 bits (637), Expect = 1e-63
 Identities = 136/224 (60%), Positives = 159/224 (70%), Gaps = 10/224 (4%)
 Frame = -1

Query: 1777 MDGNNWRPALQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHVPILGPEGINELNKS 1598
            MD NNWRP  Q     V+T DWR TLQPDSR RIVNKIM+TLKRH+P  G EG+ EL K 
Sbjct: 1    MDTNNWRPTAQGGEPAVDTGDWRATLQPDSRQRIVNKIMETLKRHLPFSGQEGLEELKKI 60

Query: 1597 AVMFEEKIYTAATSQSDYLRKISLKMLTMETKFQN---TGVPTNSAVSGQNPADPG-SHS 1430
            AV FEEKIYTAATSQSDYLRKISLKMLTME+K QN     VP N   +   P DPG S S
Sbjct: 61   AVRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNNVPNSVPPNPFGNNNRPPDPGASQS 120

Query: 1429 MQSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLPPS 1256
            MQ QV NQG   P    +NQ+Q RQQL+SQNIQN   S G+Q+S  L SAL  V+GL  +
Sbjct: 121  MQPQVHNQGQSLPVPLSANQTQTRQQLLSQNIQNNMASTGIQSSAGLTSALPPVSGLAQT 180

Query: 1255 NMANAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMP 1136
            ++ N +GQ+SN+QN+SG+ QN+      QGVPSN+F N+QRQMP
Sbjct: 181  SIPNVVGQNSNMQNISGVPQNSAGNSLGQGVPSNMFANSQRQMP 224



 Score = 66.6 bits (161), Expect = 2e-08
 Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 8/69 (11%)
 Frame = -1

Query: 184 NTLQRDMQQRLHLSG------VQLQNVMEQKQ--IQSQRVLPEASSTSIDSTTQTGNANI 29
           NTLQRDMQ  L  S        Q QNV++Q++   QSQR LPE SSTS+DST QTG+AN 
Sbjct: 546 NTLQRDMQAGLQASSQAPSSLTQQQNVIDQQKQLYQSQRPLPETSSTSLDSTAQTGHANA 605

Query: 28  AEWQEEAYQ 2
            + QEE YQ
Sbjct: 606 VDVQEEVYQ 614


>gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]
          Length = 1405

 Score =  249 bits (635), Expect = 2e-63
 Identities = 137/225 (60%), Positives = 164/225 (72%), Gaps = 9/225 (4%)
 Frame = -1

Query: 1777 MDGNNWRPALQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHVPILGPEGINELNKS 1598
            MD NNWRP      + ++T DWRT LQPDSR RIVNKIMDTLKRH+P  G +G+NEL K 
Sbjct: 16   MDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKI 75

Query: 1597 AVMFEEKIYTAATSQSDYLRKISLKMLTMETKFQN---TGVPTNSAVSGQNPADPGSHSM 1427
            A  FEEKIYTAA+SQSDYLRKISLKML+ME+K QN     + +N+  S   P DPG  SM
Sbjct: 76   AGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPG--SM 133

Query: 1426 QSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLPPSN 1253
            Q+QV NQG   P    +NQSQVRQQL+SQNIQN  +S GVQ S+ L SAL SV+GL  S 
Sbjct: 134  QNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMSSAGVQGSSGLSSALPSVSGLSQSP 193

Query: 1252 MANAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 1130
            + + +GQ+ N+QNMSGISQN+G     QGVPSN+F N+QRQ+ GR
Sbjct: 194  IPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGR 238



 Score = 75.1 bits (183), Expect = 6e-11
 Identities = 42/69 (60%), Positives = 48/69 (69%), Gaps = 8/69 (11%)
 Frame = -1

Query: 184 NTLQRDMQQRLHLSG------VQLQNVMEQKQ--IQSQRVLPEASSTSIDSTTQTGNANI 29
           N LQRDMQQRL  SG      +Q QNVM+Q++   Q QR LPE SSTS+DST QTG AN 
Sbjct: 553 NPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANG 612

Query: 28  AEWQEEAYQ 2
            +WQEE YQ
Sbjct: 613 VDWQEEVYQ 621


>ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            15a-like, partial [Cucumis sativus]
          Length = 589

 Score =  237 bits (604), Expect = 9e-60
 Identities = 132/226 (58%), Positives = 161/226 (71%), Gaps = 10/226 (4%)
 Frame = -1

Query: 1777 MDGNNWRPALQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHVPILGPEGINELNKS 1598
            MD NNWRP    EP M ET DWR+ LQPDSR RIVNKIM+TLKRH+P+ G EG++EL K 
Sbjct: 1    MDNNNWRPTQAVEPGM-ETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 59

Query: 1597 AVMFEEKIYTAATSQSDYLRKISLKMLTMETKFQ---NTGVPTNSAVSGQNPADPGSHSM 1427
            AV FEEKI+TAATSQSDYLRKISLKMLTMETK Q      +P+N  V G  P D  S SM
Sbjct: 60   AVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNPLPSNPMVPGNKPLDASSQSM 119

Query: 1426 QSQVRNQGPPSVAL---SNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLPPS 1256
            Q  V NQG PS+++   SNQ Q RQQ++ QNI N       Q+S+SL SA+  V GL  S
Sbjct: 120  QPPVINQG-PSISVPQSSNQPQPRQQILQQNIPNNIVP---QSSSSLSSAVPPVAGLASS 175

Query: 1255 NMANAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 1130
            +M+N +GQ+ N+QN+SG+ QN+G     QGVPSN+F+N+QR + GR
Sbjct: 176  SMSNMVGQNPNIQNVSGVPQNSGGNAMGQGVPSNVFSNSQRPLQGR 221



 Score = 66.6 bits (161), Expect = 2e-08
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 8/69 (11%)
 Frame = -1

Query: 184 NTLQRDMQQRLHLSG------VQLQNVMEQKQ--IQSQRVLPEASSTSIDSTTQTGNANI 29
           N +  ++QQR+ + G      +Q QNVM+Q++    SQR LPE SSTS+DST QTG AN 
Sbjct: 520 NAMSHELQQRIPVGGQAPGSLLQSQNVMDQQKQLYHSQRALPETSSTSLDSTAQTGQANG 579

Query: 28  AEWQEEAYQ 2
            +WQEE YQ
Sbjct: 580 GDWQEEIYQ 588


>ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana]
            gi|395406776|sp|F4I171.1|MD15A_ARATH RecName:
            Full=Mediator of RNA polymerase II transcription subunit
            15a gi|332191243|gb|AEE29364.1| uncharacterized protein
            [Arabidopsis thaliana]
          Length = 1335

 Score =  196 bits (499), Expect = 1e-47
 Identities = 107/219 (48%), Positives = 145/219 (66%), Gaps = 3/219 (1%)
 Frame = -1

Query: 1777 MDGNNWRPALQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHVPILGPEGINELNKS 1598
            MD NNWRP+L      ++T DWRT L PDSR +IVNKIM+TLK+H+P  GPEGINEL + 
Sbjct: 1    MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 1597 AVMFEEKIYTAATSQSDYLRKISLKMLTMETKFQNTGVPTNSAVSGQNPADPGSHSMQSQ 1418
            A  FEEKI++ A +Q+DYLRKIS+KMLTMETK QN      +  S   PA     S+ S 
Sbjct: 61   AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNA-----AGSSAAIPAANNGTSIDSI 115

Query: 1417 VRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLPPSNMAN 1244
              NQG   P    +NQSQ  Q L+SQ +QN T S G+  S +LPS++  V+ +  +N  +
Sbjct: 116  PTNQGQLLPGSLSTNQSQAPQPLLSQTMQNNTAS-GMTGSTALPSSMPPVSSITNNNTTS 174

Query: 1243 AIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 1130
             + Q++N+QN++G+ Q ++G  G+ SN+F+  QRQM GR
Sbjct: 175  VVNQNANMQNVAGMLQDSSGQHGLSSNMFSGPQRQMLGR 213



 Score = 64.3 bits (155), Expect = 1e-07
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 8/69 (11%)
 Frame = -1

Query: 184 NTLQRDMQQRLHLSG------VQLQNVMEQKQ--IQSQRVLPEASSTSIDSTTQTGNANI 29
           N LQ+D+QQRL  SG      +  QNV++Q++   QSQR LPE  S+S+DST QT +AN 
Sbjct: 531 NLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANG 590

Query: 28  AEWQEEAYQ 2
            +WQEE YQ
Sbjct: 591 GDWQEEVYQ 599


>ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arabidopsis lyrata subsp.
            lyrata] gi|297338724|gb|EFH69141.1| hypothetical protein
            ARALYDRAFT_471776 [Arabidopsis lyrata subsp. lyrata]
          Length = 1343

 Score =  194 bits (493), Expect = 7e-47
 Identities = 105/219 (47%), Positives = 146/219 (66%), Gaps = 3/219 (1%)
 Frame = -1

Query: 1777 MDGNNWRPALQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHVPILGPEGINELNKS 1598
            MD NNWRP+L      +++ DWRT L PDSR +IVNKIM+TLK+H+P  GPEGINEL + 
Sbjct: 1    MDNNNWRPSLPNGEPAMDSGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 1597 AVMFEEKIYTAATSQSDYLRKISLKMLTMETKFQNTGVPTNSAVSGQNPADPGSHSMQSQ 1418
            A  FEEKI++ A +Q+DYLRKIS+KMLTMETK QN      +  S   PA     S+ S 
Sbjct: 61   AARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNA-----AGSSASIPAANNGTSIDSI 115

Query: 1417 VRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLPPSNMAN 1244
              NQG   P    +NQSQ  Q L+SQ +QN + S G+  S +LPS++  V+ +  +N  +
Sbjct: 116  PTNQGHLLPGSLPTNQSQAPQPLLSQTMQNNSAS-GMTGSTALPSSMPPVSSITNNNATS 174

Query: 1243 AIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 1130
             + Q++N+QN++G+ Q ++G  G+ SN+F+ +QRQM GR
Sbjct: 175  VVNQNANMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGR 213



 Score = 64.3 bits (155), Expect = 1e-07
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 8/69 (11%)
 Frame = -1

Query: 184 NTLQRDMQQRLHLSG------VQLQNVMEQKQ--IQSQRVLPEASSTSIDSTTQTGNANI 29
           N LQ+D+QQRL  SG      +  QNV++Q++   QSQR LPE  S+S+DST QT +AN 
Sbjct: 535 NLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANG 594

Query: 28  AEWQEEAYQ 2
            +WQEE YQ
Sbjct: 595 GDWQEEVYQ 603