BLASTX nr result

ID: Coptis21_contig00001777 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001777
         (689 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321636.1| predicted protein [Populus trichocarpa] gi|2...    74   4e-11
ref|XP_003634240.1| PREDICTED: uncharacterized protein LOC100855...    73   6e-11
emb|CBI14947.3| unnamed protein product [Vitis vinifera]               68   1e-09
ref|XP_002318072.1| predicted protein [Populus trichocarpa] gi|2...    67   4e-09
gb|ABK96228.1| unknown [Populus trichocarpa x Populus deltoides]       65   1e-08

>ref|XP_002321636.1| predicted protein [Populus trichocarpa] gi|222868632|gb|EEF05763.1|
           predicted protein [Populus trichocarpa]
          Length = 112

 Score = 73.6 bits (179), Expect = 4e-11
 Identities = 44/111 (39%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
 Frame = -3

Query: 639 VSFGHEDLTKNHHDNWHTTSDDYRVHVNKIERMPSIID-APHYPNLHMLFNNK---AXXX 472
           +S G    T+  H  W TTSDDY  +++K+ RMPS++  AP YP++   FNNK       
Sbjct: 1   MSKGTVHQTRQQH-GWDTTSDDYHAYISKLSRMPSVLHGAPQYPSVRKAFNNKRNPTKSP 59

Query: 471 XXXXXXXXXXXQAKNSNQK--VHDEDVNMEAEKFILQKRRAFGLCKWMTMK 325
                        +N NQK  V +E V+ EAE FI QK +   LCKW T K
Sbjct: 60  KKVQVTEQVQIIEQNGNQKSEVIEETVDHEAEGFIQQKHKGLELCKWKTFK 110


>ref|XP_003634240.1| PREDICTED: uncharacterized protein LOC100855230 [Vitis vinifera]
          Length = 162

 Score = 72.8 bits (177), Expect = 6e-11
 Identities = 46/123 (37%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
 Frame = -3

Query: 645 RRVSFGHEDLTKNHHDNWHTTSDDYRVHVNKIERMPSIID-APHYPNLHMLFNNKAXXXX 469
           ++   G  D    H   W TT DDY  H+ ++ER  SI+  APHYP +H  FNNK+    
Sbjct: 41  KKTMLGSSDRKPVH--GWDTTPDDYLSHIKRMERSLSIVPGAPHYPVVHKAFNNKSPFEE 98

Query: 468 XXXXXXXXXXQAK-----------NSNQKVHDE---DVNMEAEKFILQKRRAFGLCKWMT 331
                       K           N + +V DE   D+  EAE FI QK R F LCKW T
Sbjct: 99  AQGNGRKQRQPRKVSFQDQQGQSNNGSSQVVDEETDDIEAEAEGFIQQKHRGFELCKWKT 158

Query: 330 MKA 322
            KA
Sbjct: 159 FKA 161


>emb|CBI14947.3| unnamed protein product [Vitis vinifera]
          Length = 239

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 41/109 (37%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
 Frame = -3

Query: 645 RRVSFGHEDLTKNHHDNWHTTSDDYRVHVNKIERMPSIID-APHYPNLHMLFNNKAXXXX 469
           ++   G  D    H   W TT DDY  H+ ++ER  SI+  APHYP +H  FNNK+    
Sbjct: 41  KKTMLGSSDRKPVH--GWDTTPDDYLSHIKRMERSLSIVPGAPHYPVVHKAFNNKSPF-- 96

Query: 468 XXXXXXXXXXQAKNSNQKVHDEDVNMEAEKFILQKRRAFGLCKWMTMKA 322
                               +   N EAE FI QK R F LCKW T KA
Sbjct: 97  -------------------EEAQGNAEAEGFIQQKHRGFELCKWKTFKA 126


>ref|XP_002318072.1| predicted protein [Populus trichocarpa] gi|222858745|gb|EEE96292.1|
           predicted protein [Populus trichocarpa]
          Length = 160

 Score = 66.6 bits (161), Expect = 4e-09
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 23/132 (17%)
 Frame = -3

Query: 651 MSRRVSFGHEDLTKNHHDNWHTTSDDYRVHVNKIERMPSII-DAPHYPNLHMLFNNKAXX 475
           +S+++S G    T+    + +TTS DY  +++++ +MPSII  AP YP++H  FNNK   
Sbjct: 28  LSKKMSKGSAYQTRQRQGS-NTTSGDYHDYISRLSKMPSIIHGAPQYPSVHKAFNNKVTQ 86

Query: 474 XXXXXXXXXXXXQAKN---SNQKVH-------------------DEDVNMEAEKFILQKR 361
                         KN   S +KV                    +EDV+ EA+ FI QK+
Sbjct: 87  EEEVNEARQDNVNKKNPARSTKKVRVKEQVQVIDQNGNRKSEDIEEDVDDEADGFIKQKQ 146

Query: 360 RAFGLCKWMTMK 325
           + F LCKW T K
Sbjct: 147 KGFELCKWKTFK 158


>gb|ABK96228.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 129

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 23/112 (20%)
 Frame = -3

Query: 591 HTTSDDYRVHVNKIERMPSII-DAPHYPNLHMLFNNKAXXXXXXXXXXXXXXQAKN---S 424
           +TTS DY  +++++ +MPSII  AP YP++H  FNNK                 KN   S
Sbjct: 16  NTTSGDYHDYISRLSKMPSIIHGAPQYPSVHKAFNNKVTQEEEVNEARQDNVNKKNPTRS 75

Query: 423 NQKVH-------------------DEDVNMEAEKFILQKRRAFGLCKWMTMK 325
            +KV                    +EDV+ EA+ FI QK++ F LCKW T K
Sbjct: 76  TKKVRVKEQVQVIDQNGNRKSEDIEEDVDAEADGFIKQKQKGFELCKWKTFK 127


Top