BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001732
         (770 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   360   1e-97
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   357   1e-96
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   352   4e-95
gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]    349   4e-94
tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subuni...   348   6e-94

>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  360 bits (925), Expect = 1e-97
 Identities = 188/262 (71%), Positives = 210/262 (80%), Gaps = 7/262 (2%)
 Frame = -2

Query: 766  QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGGY-NIHSLMNXXXXXXXXXX 590
            QVEIKRD+QQ+EVRIF+D+GRILRPLLVV+NL KI   KGG     SL++          
Sbjct: 629  QVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTE 688

Query: 589  XXEDCQTAWGVKYLFS--EGKV---YTHCELDPSFLLGLSCGIIPFTNHDHARRALYQSE 425
              EDC TAWG+K+L S  +GK    YTHCELD SFLLGLSCGIIPF NHDHARR LYQ++
Sbjct: 689  EEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQ 748

Query: 424  KHSQQAIGFSTTNPKIRVDTLSHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIY 248
            KHSQQAIGF TTNP IRVDTLSHQLYYPQRPLFRTV SDCLGKP    G N + P  E+Y
Sbjct: 749  KHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELY 808

Query: 247  NGQNAIVAVNVHQGYNQEDSLVMN*ASLERGMFRTEHIRCYKAEVENKEILETKRMKSKD 68
            NGQNAIVAVNVH GYNQEDSLVMN ASLERGMFR+EHIR YKA+V+NKE+L+ KR K  D
Sbjct: 809  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLD-KRRKYDD 867

Query: 67   KIDFGKMPSKIGRVDSLDDDGF 2
             ++FGK+PSKIGRVDSLDDDGF
Sbjct: 868  NVNFGKIPSKIGRVDSLDDDGF 889


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  357 bits (917), Expect = 1e-96
 Identities = 187/261 (71%), Positives = 205/261 (78%), Gaps = 6/261 (2%)
 Frame = -2

Query: 766  QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMNXXXXXXXXXX 590
            QVEIKRD+QQ EVRIF+D+GRILRPLLVVENLKK+   KG  +   SL++          
Sbjct: 625  QVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAE 684

Query: 589  XXEDCQTAWGVKYLFSEGK----VYTHCELDPSFLLGLSCGIIPFTNHDHARRALYQSEK 422
              EDC TAWG+KYL          YTHCELD SFLLGLSCGIIP+ NHDHARR LYQSEK
Sbjct: 685  EEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEK 744

Query: 421  HSQQAIGFSTTNPKIRVDTLSHQLYYPQRPLFRTVISDCLGKPEYPLG-KNVHPMSEIYN 245
            HSQQAIGFSTTNP IRVDTLSHQLYYPQRPLFRT+ISDCLGKP Y  G K + P  E +N
Sbjct: 745  HSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFN 804

Query: 244  GQNAIVAVNVHQGYNQEDSLVMN*ASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDK 65
            GQ AIVAVNVH GYNQEDSLVMN ASLERGMFR+EHIR YK+EV+N E L+ KR KS+D 
Sbjct: 805  GQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDS 863

Query: 64   IDFGKMPSKIGRVDSLDDDGF 2
            + FGKM SKIGRVDSLDDDGF
Sbjct: 864  VHFGKMQSKIGRVDSLDDDGF 884


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  352 bits (904), Expect = 4e-95
 Identities = 181/262 (69%), Positives = 208/262 (79%), Gaps = 7/262 (2%)
 Frame = -2

Query: 766  QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMNXXXXXXXXXX 590
            QVEIKRD+Q  EVR+F+D+GRILRPLLVVENL KI   KGG Y+  SL++          
Sbjct: 445  QVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTE 504

Query: 589  XXEDCQTAWGVKYLFSEGKV-----YTHCELDPSFLLGLSCGIIPFTNHDHARRALYQSE 425
              EDC+TAWG+ YLF E +      YTHCELD SFLLGLS  IIPF NHDHARR LYQSE
Sbjct: 505  EEEDCRTAWGINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSE 564

Query: 424  KHSQQAIGFSTTNPKIRVDTLSHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIY 248
            KHSQQA+GF+TTNP IRVDT +HQLYYPQRPLFRT++SDCLGKP YPLG N + P +E +
Sbjct: 565  KHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYF 624

Query: 247  NGQNAIVAVNVHQGYNQEDSLVMN*ASLERGMFRTEHIRCYKAEVENKEILETKRMKSKD 68
            NGQ AIVAVNVH GYNQEDSLVMN ASLERGMFR+EHIR YKA+V+NKE +  K+ K +D
Sbjct: 625  NGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKESV-GKKPKFED 683

Query: 67   KIDFGKMPSKIGRVDSLDDDGF 2
             ++FGK+ SKIGRVDSLDDDGF
Sbjct: 684  SVNFGKVQSKIGRVDSLDDDGF 705


>gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 475

 Score =  349 bits (895), Expect = 4e-94
 Identities = 180/262 (68%), Positives = 209/262 (79%), Gaps = 7/262 (2%)
 Frame = -2

Query: 766 QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMNXXXXXXXXXX 590
           QVEIK+D Q  EVRIF D+GRILRPLLVVENL+KI LLKG  ++  +L++          
Sbjct: 67  QVEIKQDIQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVE 126

Query: 589 XXEDCQTAWGVKYLFSEGK-----VYTHCELDPSFLLGLSCGIIPFTNHDHARRALYQSE 425
             EDC+TAW +KYLF+  K      YTHCELD SFLLG+SCGIIPF NHDHARR LYQSE
Sbjct: 127 EEEDCRTAWEIKYLFTGEKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186

Query: 424 KHSQQAIGFSTTNPKIRVDTLSHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIY 248
           KHS QAIG++TTNP IR+DTLSHQ+YYPQRPLFR+VI+D LGK  +PLG+N + P +E +
Sbjct: 187 KHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFF 246

Query: 247 NGQNAIVAVNVHQGYNQEDSLVMN*ASLERGMFRTEHIRCYKAEVENKEILETKRMKSKD 68
           NGQNAIVAVNVH GYNQEDS+VMN ASLERGMFRTEHIR YKAEV+NK+ LE KR K  D
Sbjct: 247 NGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLE-KRRKFDD 305

Query: 67  KIDFGKMPSKIGRVDSLDDDGF 2
            + FGK+ SK+GRVDSLDDDGF
Sbjct: 306 AVSFGKIQSKLGRVDSLDDDGF 327


>tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1063

 Score =  348 bits (894), Expect = 6e-94
 Identities = 183/261 (70%), Positives = 206/261 (78%), Gaps = 6/261 (2%)
 Frame = -2

Query: 769  PQVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKG-GYNIHSLMNXXXXXXXXX 593
            PQVEIKRD+   EVR+FTD+GRILRPLLVVENL KI   KG  ++ H LM          
Sbjct: 656  PQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGV 715

Query: 592  XXXEDCQTAWGVKYLF-SEGKV--YTHCELDPSFLLGLSCGIIPFTNHDHARRALYQSEK 422
               ED Q AWG+++LF SEG +  YTHCELDPSFLLGLSCGIIPF NH+ ARR LYQSEK
Sbjct: 716  EEEEDIQCAWGIRHLFESEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEK 775

Query: 421  HSQQAIGFSTTNPKIRVDTLSHQLYYPQRPLFRTVISDCLGKPEYPL--GKNVHPMSEIY 248
            HSQQAIG+STTNP IRVDTLSHQLYYPQRPLF+TVI+DCLG+ +Y     KN     E +
Sbjct: 776  HSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYF 835

Query: 247  NGQNAIVAVNVHQGYNQEDSLVMN*ASLERGMFRTEHIRCYKAEVENKEILETKRMKSKD 68
            NGQNAIVAVNVHQG+NQEDSLVMN ASLERGMFRTEH+R YKA+VENK+   TKR+K K+
Sbjct: 836  NGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKD--GTKRLKLKE 893

Query: 67   KIDFGKMPSKIGRVDSLDDDG 5
            KIDFGK  SK GRVD+LDDDG
Sbjct: 894  KIDFGKTESKRGRVDNLDDDG 914