BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001731
         (738 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   358   6e-97
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              357   1e-96
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   357   1e-96
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   342   6e-92
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh...   339   3e-91

>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  358 bits (919), Expect = 6e-97
 Identities = 178/246 (72%), Positives = 204/246 (82%)
 Frame = +1

Query: 1   QKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERRMVKAM 180
           QKA FLGYMVK LLQ+Y+G+ K DN+DDFRNKRL+LAGELLERELR H+KHAERRMVKAM
Sbjct: 206 QKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLELAGELLERELRVHVKHAERRMVKAM 265

Query: 181 QRDLYGERSLRQIEHYLDASLITNGLTKAFSTGAWSHHFRYSEKINGVVANLRRTNPLQT 360
           QRDLYGER +  IEHYLDAS+ITNGL++AFSTGAWSH ++  E+I+GVVA LRRTNPLQT
Sbjct: 266 QRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSHPYKKMERISGVVATLRRTNPLQT 325

Query: 361 MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 540
           + DMRKTRQ V Y+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+AITG+VSTN+ +
Sbjct: 326 IADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEE 385

Query: 541 PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLNGEWVGVCRDSLSLVNTLKRKRRSKEVPP 720
             L  LL  GMEK           GK K+FL+G WVGVC DS+S V  L+RKRR KEVP 
Sbjct: 386 HFLDKLLDSGMEK-LVDDTSTLLSGKVKVFLDGNWVGVCGDSVSFVAALRRKRRRKEVPH 444

Query: 721 QVEIKR 738
           QVEIKR
Sbjct: 445 QVEIKR 450


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  357 bits (917), Expect = 1e-96
 Identities = 175/246 (71%), Positives = 204/246 (82%)
 Frame = +1

Query: 1    QKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERRMVKAM 180
            QKA FLGYMVK LLQ+Y+G+ K DN+DDFRNKRL+LAGELLERELR HI+HAERRMVKAM
Sbjct: 422  QKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAM 481

Query: 181  QRDLYGERSLRQIEHYLDASLITNGLTKAFSTGAWSHHFRYSEKINGVVANLRRTNPLQT 360
            QR+LYG+R LR IE+YLDAS+ITNGL++AFSTG WSH F+  E+I+GVVA LRRTNPLQ 
Sbjct: 482  QRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQM 541

Query: 361  MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 540
              DMRKTRQ VQY+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+AITG+VST ++ 
Sbjct: 542  TADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLD 601

Query: 541  PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLNGEWVGVCRDSLSLVNTLKRKRRSKEVPP 720
            PL+  L  CGMEK           GKNK+FL+G+WVGVC D +S V  L+ KRR KE+P 
Sbjct: 602  PLVDKLFDCGMEK-LVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQ 660

Query: 721  QVEIKR 738
            QVEIKR
Sbjct: 661  QVEIKR 666


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  357 bits (917), Expect = 1e-96
 Identities = 175/246 (71%), Positives = 204/246 (82%)
 Frame = +1

Query: 1    QKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERRMVKAM 180
            QKA FLGYMVK LLQ+Y+G+ K DN+DDFRNKRL+LAGELLERELR HI+HAERRMVKAM
Sbjct: 386  QKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAM 445

Query: 181  QRDLYGERSLRQIEHYLDASLITNGLTKAFSTGAWSHHFRYSEKINGVVANLRRTNPLQT 360
            QR+LYG+R LR IE+YLDAS+ITNGL++AFSTG WSH F+  E+I+GVVA LRRTNPLQ 
Sbjct: 446  QRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQM 505

Query: 361  MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 540
              DMRKTRQ VQY+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+AITG+VST ++ 
Sbjct: 506  TADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLD 565

Query: 541  PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLNGEWVGVCRDSLSLVNTLKRKRRSKEVPP 720
            PL+  L  CGMEK           GKNK+FL+G+WVGVC D +S V  L+ KRR KE+P 
Sbjct: 566  PLVDKLFDCGMEK-LVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQ 624

Query: 721  QVEIKR 738
            QVEIKR
Sbjct: 625  QVEIKR 630


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  342 bits (876), Expect = 6e-92
 Identities = 167/246 (67%), Positives = 196/246 (79%)
 Frame = +1

Query: 1    QKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERRMVKAM 180
            QKA FLGYMVK LL S+ G+ K DN+DDFRNKRL+LAGELLERELR HIKHAERRMVKAM
Sbjct: 399  QKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAM 458

Query: 181  QRDLYGERSLRQIEHYLDASLITNGLTKAFSTGAWSHHFRYSEKINGVVANLRRTNPLQT 360
            QRDLYG+R ++ IEHYLDAS+ITNGL++AFSTG W H ++  E+++GVVA LRRTNPLQ 
Sbjct: 459  QRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQM 518

Query: 361  MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 540
              DMRK+RQ V Y+GKVGDAR+PHPSHWGKLCFLST DGENCGLVKN+A  G+VST +++
Sbjct: 519  TADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILK 578

Query: 541  PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLNGEWVGVCRDSLSLVNTLKRKRRSKEVPP 720
            P L  L  CGM+K           GK K+ L+GEWVGVC DS   V+ L+RKRR  EVP 
Sbjct: 579  PFLETLFRCGMQK-LVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPH 637

Query: 721  QVEIKR 738
            QVE+KR
Sbjct: 638  QVEVKR 643


>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score =  339 bits (870), Expect = 3e-91
 Identities = 169/248 (68%), Positives = 201/248 (81%), Gaps = 2/248 (0%)
 Frame = +1

Query: 1   QKALFLGYMVKRLLQSYSGQGKPDNKDDFRNKRLDLAGELLERELRNHIKHAERRMVKAM 180
           QKA  LGYMVK LL++Y G+ K DN+DDFRNKRL+LAGELLERELR HIKHAERRM KAM
Sbjct: 7   QKARLLGYMVKCLLEAYRGRRKVDNRDDFRNKRLELAGELLERELRVHIKHAERRMTKAM 66

Query: 181 QRDLYGERSLRQIEHYLDASLITNGLTKAFSTGAWSHHFRYSEKINGVVANLRRTNPLQT 360
           QRDLY +R ++ I+ YLDAS+ITNGL++AFSTGAWSH ++  E+I+GVVA LRRTNPLQT
Sbjct: 67  QRDLYRDREIQSIDSYLDASIITNGLSRAFSTGAWSHPYKRMERISGVVATLRRTNPLQT 126

Query: 361 MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLI- 537
           M DMRKTRQ V Y+G+VGDAR+PHPSHWGK+CFLST DGENCGLVKN+A  G+VSTN++ 
Sbjct: 127 MADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTNVLE 186

Query: 538 -QPLLGILLVCGMEKXXXXXXXXXXKGKNKIFLNGEWVGVCRDSLSLVNTLKRKRRSKEV 714
            + LL    VCGMEK          +GK+K FL+GEWVG+C+DS S V  L+RKRR  E+
Sbjct: 187 QESLLRQFHVCGMEK-LVDDTSSVLEGKHKAFLDGEWVGMCKDSKSFVAKLRRKRRMMEM 245

Query: 715 PPQVEIKR 738
           P QVEIKR
Sbjct: 246 PYQVEIKR 253