BLASTX nr result
ID: Coptis21_contig00001682
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00001682
(1617 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A... 131 1e-45
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab... 131 1e-45
dbj|BAD94207.1| elongation factor like protein [Arabidopsis thal... 131 1e-45
ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 132 3e-45
ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 131 9e-45
>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
gi|30679607|ref|NP_849600.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
to an U5 snRNP-specific protein 116 kD from Homo sapiens
gi|4759280 and contains elongation factor G C-terminus
PF|00679 and is a member of the elongation factor Tu
family PF|00009 [Arabidopsis thaliana]
gi|110741512|dbj|BAE98706.1| elongation factor like
protein [Arabidopsis thaliana]
gi|332189840|gb|AEE27961.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|332189841|gb|AEE27962.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
Length = 987
Score = 131 bits (329), Expect(2) = 1e-45
Identities = 80/149 (53%), Positives = 90/149 (60%), Gaps = 5/149 (3%)
Frame = +1
Query: 1186 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYLISFYDGSA*AY 1365
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAY SA
Sbjct: 784 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAY-------SAFLM 836
Query: 1366 GTCLLCR-----YIQTPMIVKQSTQCYLQSTQCYLVVVDT*QLISLSRVPQLI*SRHFYQ 1530
T L IQTP+ + L + + V D Q P I
Sbjct: 837 ATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGH-VTSDVPQ----PGTPAYIVKAFLPV 891
Query: 1531 SESFGFETDLQYHTQGQAFCYFVFDHWSI 1617
ESFGFETDL+YHTQGQAFC VFDHW+I
Sbjct: 892 IESFGFETDLRYHTQGQAFCLSVFDHWAI 920
Score = 80.5 bits (197), Expect(2) = 1e-45
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +2
Query: 932 IAEDIENGIVNID*NRKTIGEFFQTKYDWDLLAAQSIWAFGSDKQ 1066
+AEDIENG+V+ID NRK +G+FF+TKYDWDLLAA+SIWAFG DKQ
Sbjct: 710 LAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQ 754
>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
Length = 987
Score = 131 bits (329), Expect(2) = 1e-45
Identities = 80/149 (53%), Positives = 90/149 (60%), Gaps = 5/149 (3%)
Frame = +1
Query: 1186 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYLISFYDGSA*AY 1365
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAY SA
Sbjct: 784 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAY-------SAFLM 836
Query: 1366 GTCLLCR-----YIQTPMIVKQSTQCYLQSTQCYLVVVDT*QLISLSRVPQLI*SRHFYQ 1530
T L IQTP+ + L + + V D Q P I
Sbjct: 837 ATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGH-VTSDVPQ----PGTPAYIVKAFLPV 891
Query: 1531 SESFGFETDLQYHTQGQAFCYFVFDHWSI 1617
ESFGFETDL+YHTQGQAFC VFDHW+I
Sbjct: 892 IESFGFETDLRYHTQGQAFCLSVFDHWAI 920
Score = 80.5 bits (197), Expect(2) = 1e-45
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +2
Query: 932 IAEDIENGIVNID*NRKTIGEFFQTKYDWDLLAAQSIWAFGSDKQ 1066
+AEDIENG+V+ID NRK +G+FF+TKYDWDLLAA+SIWAFG DKQ
Sbjct: 710 LAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQ 754
>dbj|BAD94207.1| elongation factor like protein [Arabidopsis thaliana]
Length = 333
Score = 131 bits (329), Expect(2) = 1e-45
Identities = 80/149 (53%), Positives = 90/149 (60%), Gaps = 5/149 (3%)
Frame = +1
Query: 1186 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYLISFYDGSA*AY 1365
FQWGAREGPLCD+PIRNVKFKIVDA+IA EPLHRG+ Q+IPTARRVAY SA
Sbjct: 130 FQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAY-------SAFLM 182
Query: 1366 GTCLLCR-----YIQTPMIVKQSTQCYLQSTQCYLVVVDT*QLISLSRVPQLI*SRHFYQ 1530
T L IQTP+ + L + + V D Q P I
Sbjct: 183 ATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGH-VTSDVPQ----PGTPAYIVKAFLPV 237
Query: 1531 SESFGFETDLQYHTQGQAFCYFVFDHWSI 1617
ESFGFETDL+YHTQGQAFC VFDHW+I
Sbjct: 238 IESFGFETDLRYHTQGQAFCLSVFDHWAI 266
Score = 80.5 bits (197), Expect(2) = 1e-45
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +2
Query: 932 IAEDIENGIVNID*NRKTIGEFFQTKYDWDLLAAQSIWAFGSDKQ 1066
+AEDIENG+V+ID NRK +G+FF+TKYDWDLLAA+SIWAFG DKQ
Sbjct: 56 LAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQ 100
>ref|XP_003549705.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like
[Glycine max]
Length = 988
Score = 132 bits (331), Expect(2) = 3e-45
Identities = 81/149 (54%), Positives = 89/149 (59%), Gaps = 5/149 (3%)
Frame = +1
Query: 1186 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYLISFYDGSA*AY 1365
FQWGAREGPLCD+PIRNVKFKIVDAKIA E LHRG+ QIIPTARRVAY SA
Sbjct: 785 FQWGAREGPLCDEPIRNVKFKIVDAKIANESLHRGSGQIIPTARRVAY-------SAFLM 837
Query: 1366 GTCLLCR-----YIQTPMIVKQSTQCYLQSTQCYLVVVDT*QLISLSRVPQLI*SRHFYQ 1530
T L IQTP+ + L + + V D Q P I
Sbjct: 838 ATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGH-VTADVPQ----PGTPAYIVKAFLPV 892
Query: 1531 SESFGFETDLQYHTQGQAFCYFVFDHWSI 1617
ESFGFETDL+YHTQGQAFC VFDHW+I
Sbjct: 893 IESFGFETDLRYHTQGQAFCMSVFDHWAI 921
Score = 78.2 bits (191), Expect(2) = 3e-45
Identities = 34/45 (75%), Positives = 41/45 (91%)
Frame = +2
Query: 932 IAEDIENGIVNID*NRKTIGEFFQTKYDWDLLAAQSIWAFGSDKQ 1066
+AEDIENG+V+ D ++K +GEFFQTKYDWDLLAA+SIWAFG DKQ
Sbjct: 711 LAEDIENGVVSTDWSKKKLGEFFQTKYDWDLLAARSIWAFGPDKQ 755
>ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like
[Glycine max]
Length = 986
Score = 131 bits (330), Expect(2) = 9e-45
Identities = 81/149 (54%), Positives = 89/149 (59%), Gaps = 5/149 (3%)
Frame = +1
Query: 1186 FQWGAREGPLCDKPIRNVKFKIVDAKIAQEPLHRGTSQIIPTARRVAYLISFYDGSA*AY 1365
FQWGAREGPLCD+PIRNVKFKIVDAKIA E LHRG+ QIIPTARRVAY SA
Sbjct: 783 FQWGAREGPLCDEPIRNVKFKIVDAKIATESLHRGSGQIIPTARRVAY-------SAFLM 835
Query: 1366 GTCLLCR-----YIQTPMIVKQSTQCYLQSTQCYLVVVDT*QLISLSRVPQLI*SRHFYQ 1530
T L IQTP+ + L + + V D Q P I
Sbjct: 836 ATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGH-VTADVPQ----PGTPAYIVKAFLPV 890
Query: 1531 SESFGFETDLQYHTQGQAFCYFVFDHWSI 1617
ESFGFETDL+YHTQGQAFC VFDHW+I
Sbjct: 891 IESFGFETDLRYHTQGQAFCMSVFDHWAI 919
Score = 77.0 bits (188), Expect(2) = 9e-45
Identities = 33/45 (73%), Positives = 41/45 (91%)
Frame = +2
Query: 932 IAEDIENGIVNID*NRKTIGEFFQTKYDWDLLAAQSIWAFGSDKQ 1066
+AEDIENG+V+ D ++K +G+FFQTKYDWDLLAA+SIWAFG DKQ
Sbjct: 709 LAEDIENGVVSTDWSKKKLGDFFQTKYDWDLLAARSIWAFGPDKQ 753