BLASTX nr result
ID: Coptis21_contig00001654
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00001654
(1528 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257... 271 9e-85
emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera] 271 1e-84
ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C,... 265 1e-82
ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleop... 251 7e-79
ref|XP_004173706.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneou... 249 2e-78
>ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
Length = 464
Score = 271 bits (694), Expect(2) = 9e-85
Identities = 167/369 (45%), Positives = 197/369 (53%), Gaps = 51/369 (13%)
Frame = -1
Query: 1300 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPTLTEEGFR 1121
H IDGRTVEAKRALSREEQQTS R+G R+ G GGN+KTKKIFVGGLPPTL+EEGFR
Sbjct: 68 HIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFR 127
Query: 1120 QYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRALP 941
QYFEA+G VTDVVVM+DQ+TQRPRGFGF++FDTE+AVDRVL+K+FHDLNGK VEVKRALP
Sbjct: 128 QYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALP 187
Query: 940 KDAN-----XXXXXXXXXXXXXXXXXXSNAGN-GSYNSQMDGSRYMQPQATXXXXXXXXX 779
KDAN ++ GN +Y+ +MD +RYMQPQ T
Sbjct: 188 KDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNTGGGFPPYGS 247
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNTSYGNDPPGS-KS 602
NV N Y PPG+ +S
Sbjct: 248 SGYSAPGYGYGPANNGMGYGGYGGYGGANPGYGGPAGAPYGNPNVPNAGYAGGPPGAPRS 307
Query: 601 SWSGQAPSGYGSAPY----------------GGTGFAAPGQSPSGTAAYGNKDFXXXXXX 470
SW+ QAPSGYG Y GGTG A+ GQSPSG A YGN+ +
Sbjct: 308 SWNSQAPSGYGGVGYGNAASWGSSAGGGAGSGGTGSASSGQSPSGAAGYGNQSYGYGGYG 367
Query: 469 XXXYENQN---------------SYNAG------------RGGHANNSGNSGYTSTAWSS 371
N + NAG GG+ + +GNSGY + AW S
Sbjct: 368 GSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANGNSGYGNAAWKS 427
Query: 370 DPSQ-NGNY 347
DPSQ +GNY
Sbjct: 428 DPSQASGNY 436
Score = 70.5 bits (171), Expect(2) = 9e-85
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 1527 TTEEKLSEYFGNYGQVLQTVVMKDKVTDRPRGFGFVVFADP 1405
T+E+KL EYFG+YG+V Q VVM+DK T RPRGFGFVVFADP
Sbjct: 17 TSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADP 57
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = -1
Query: 1171 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 992
K+F+GG+ +E+ ++YF +YG V+ VVM D+ T RPRGFGF+ F +DRVL +
Sbjct: 7 KLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQE 66
Query: 991 SFHDLNGKNVEVKRALPKD 935
H ++G+ VE KRAL ++
Sbjct: 67 K-HIIDGRTVEAKRALSRE 84
>emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
Length = 464
Score = 271 bits (692), Expect(2) = 1e-84
Identities = 166/369 (44%), Positives = 198/369 (53%), Gaps = 51/369 (13%)
Frame = -1
Query: 1300 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPTLTEEGFR 1121
H IDGRTVEAKRALSREEQQTS R+G R+ G GGN+KTKKIFVGGLPPTL+EEGFR
Sbjct: 68 HIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFR 127
Query: 1120 QYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRALP 941
QYFEA+G VTDVVVM+DQ+TQRPRGFGF++FDTE+AVDRVL+K+FHDLNGK VEVKRALP
Sbjct: 128 QYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALP 187
Query: 940 KDAN-----XXXXXXXXXXXXXXXXXXSNAGN-GSYNSQMDGSRYMQPQATXXXXXXXXX 779
KDAN ++ GN +Y+ +MD +RYMQPQ T
Sbjct: 188 KDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNTGGGFPPYGS 247
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNTSYGNDPPGS-KS 602
NV N Y PPG+ +S
Sbjct: 248 SGYSAPGYGYGPANNGMGYGGYGGYGGANPGYGGPAGAPYGNPNVPNAGYAGGPPGAPRS 307
Query: 601 SWSGQAPSGYGSAPY----------------GGTGFAAPGQSPSGTAAYGNKDFXXXXXX 470
SW+ QAPSGYG+ Y GGTG A+ GQSPSG A YGN+ +
Sbjct: 308 SWNSQAPSGYGAVGYGNAASWGPSAGGGAGSGGTGSASSGQSPSGAAGYGNQSYGYGGYG 367
Query: 469 XXXYENQN---------------SYNAG------------RGGHANNSGNSGYTSTAWSS 371
N + NAG GG+ + +GNSGY + +W S
Sbjct: 368 GSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANGNSGYGNASWKS 427
Query: 370 DPSQ-NGNY 347
DPSQ +GNY
Sbjct: 428 DPSQASGNY 436
Score = 70.5 bits (171), Expect(2) = 1e-84
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 1527 TTEEKLSEYFGNYGQVLQTVVMKDKVTDRPRGFGFVVFADP 1405
T+E+KL EYFG+YG+V Q VVM+DK T RPRGFGFVVFADP
Sbjct: 17 TSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADP 57
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = -1
Query: 1171 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 992
K+F+GG+ +E+ ++YF +YG V+ VVM D+ T RPRGFGF+ F +DRVL +
Sbjct: 7 KLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQE 66
Query: 991 SFHDLNGKNVEVKRALPKD 935
H ++G+ VE KRAL ++
Sbjct: 67 K-HIIDGRTVEAKRALSRE 84
>ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis] gi|223532245|gb|EEF34049.1| Heterogeneous
nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 470
Score = 265 bits (678), Expect(2) = 1e-82
Identities = 164/374 (43%), Positives = 190/374 (50%), Gaps = 56/374 (14%)
Frame = -1
Query: 1300 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPTLTEEGFR 1121
HTIDGRTVEAK+ALSREEQQT+ RSG R+ GSGGN++TKKIFVGGLPP LT++ FR
Sbjct: 68 HTIDGRTVEAKKALSREEQQTNARSGNLNPPRNSGSGGNIRTKKIFVGGLPPALTDDEFR 127
Query: 1120 QYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRALP 941
QYFEAYG+VTDVV+M+DQNTQRPRGFGFI+FD E+AVDRVLHK+FHDLNGK VEVKRALP
Sbjct: 128 QYFEAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDAVDRVLHKTFHDLNGKQVEVKRALP 187
Query: 940 KDANXXXXXXXXXXXXXXXXXXSNAGNG------------SYNSQMDGSRYMQPQATXXX 797
KDAN G SY ++D +RYMQ Q T
Sbjct: 188 KDANPGGGNRSMGGGGNIGGGGGGGAGGYQGYGASGGNASSYEGRIDSNRYMQSQGTGGS 247
Query: 796 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNTSYGNDP 617
V N Y + P
Sbjct: 248 FPPYGSSGYSGPGYGYGPANNGVGYGGYGSYGGAGAGYGGPAGAAYGNPAVPNAGYASGP 307
Query: 616 PGS-KSSWSGQAPSGYGSAPY--------------GGTGFAAPGQSPSGTAAYGNKDFXX 482
PG+ +SSWS QAPSGYG+ Y GG G A GQSPSG+A YGN+ +
Sbjct: 308 PGAPRSSWSSQAPSGYGAMGYGNAASWGANTGAGSGGPGSAPAGQSPSGSAGYGNQGYGY 367
Query: 481 XXXXXXXYE--NQNSYNA--GRGGHANNS------------------------GNSGYTS 386
N Y+A GR G A NS GN GY +
Sbjct: 368 GSYGGNDGSYGNPAGYSAVGGRSGGAPNSNVGAGGELQGSGGGYMGSDYGDANGNPGYGT 427
Query: 385 TAWSSDPSQ-NGNY 347
W SDPSQ +GNY
Sbjct: 428 AGWRSDPSQASGNY 441
Score = 69.3 bits (168), Expect(2) = 1e-82
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -2
Query: 1527 TTEEKLSEYFGNYGQVLQTVVMKDKVTDRPRGFGFVVFADP 1405
TTE+KL +YF YG V+QTVVM+DK T RPRGFGFVVFADP
Sbjct: 17 TTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADP 57
Score = 72.4 bits (176), Expect = 3e-10
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = -1
Query: 1171 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 992
K+F+GG+ TE+ + YF YG V VVM D+ T RPRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADPNILDRVLQD 66
Query: 991 SFHDLNGKNVEVKRALPKD 935
H ++G+ VE K+AL ++
Sbjct: 67 K-HTIDGRTVEAKKALSRE 84
>ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Cucumis
sativus]
Length = 462
Score = 251 bits (642), Expect(2) = 7e-79
Identities = 154/343 (44%), Positives = 181/343 (52%), Gaps = 26/343 (7%)
Frame = -1
Query: 1300 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGG-NLKTKKIFVGGLPPTLTEEGF 1124
HTIDG+TVEAKRALSREEQQT R+ G S GSGG N++TKKIFVGGLPPTLTEEGF
Sbjct: 68 HTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKIFVGGLPPTLTEEGF 127
Query: 1123 RQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRAL 944
++YFEAYG VTDVVVM+DQNT+RPRGFGFI+FDTEEAVDRVLHK+FHDLNGK VEVKRAL
Sbjct: 128 KEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRAL 187
Query: 943 PKDANXXXXXXXXXXXXXXXXXXSNAGNG-----SYNSQMDGSRYMQPQATXXXXXXXXX 779
PKDAN +G SY+++MD +RYMQ Q +
Sbjct: 188 PKDANPGAGGRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGS 247
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNTSYGNDPPGS-KS 602
NV N YG+ P G ++
Sbjct: 248 SGYNNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPTAVAYGNPNVANAGYGSGPQGGPRN 307
Query: 601 SWSGQAPSGYGSAPYG-------------GTGFAAPGQSPSG------TAAYGNKDFXXX 479
SWSGQAPSGYG+ YG G G PG +P+G A YGN+ +
Sbjct: 308 SWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYG 367
Query: 478 XXXXXXYENQNSYNAGRGGHANNSGNSGYTSTAWSSDPSQNGN 350
Y G GG + SGY +T S + N N
Sbjct: 368 GF------GNQGYGYG-GGDGSYGSQSGYGTTGGRSGSASNSN 403
Score = 70.9 bits (172), Expect(2) = 7e-79
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = -2
Query: 1527 TTEEKLSEYFGNYGQVLQTVVMKDKVTDRPRGFGFVVFADP 1405
T+E+KL +YF NYG+V+ TVVM+DK+T RPRGFGFVVF+DP
Sbjct: 17 TSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDP 57
Score = 73.9 bits (180), Expect = 1e-10
Identities = 36/79 (45%), Positives = 49/79 (62%)
Frame = -1
Query: 1171 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 992
K+F+GG+ +E+ + YF YG V VVM D+ T RPRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
Query: 991 SFHDLNGKNVEVKRALPKD 935
H ++GK VE KRAL ++
Sbjct: 67 K-HTIDGKTVEAKRALSRE 84
>ref|XP_004173706.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D-like [Cucumis sativus]
Length = 462
Score = 249 bits (637), Expect(2) = 2e-78
Identities = 153/343 (44%), Positives = 180/343 (52%), Gaps = 26/343 (7%)
Frame = -1
Query: 1300 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGG-NLKTKKIFVGGLPPTLTEEGF 1124
HTIDG+TVEAKRALSREEQQT R+ G S GSGG N++TKK FVGGLPPTLTEEGF
Sbjct: 68 HTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKXFVGGLPPTLTEEGF 127
Query: 1123 RQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRAL 944
++YFEAYG VTDVVVM+DQNT+RPRGFGFI+FDTEEAVDRVLHK+FHDLNGK VEVKRAL
Sbjct: 128 KEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRAL 187
Query: 943 PKDANXXXXXXXXXXXXXXXXXXSNAGNG-----SYNSQMDGSRYMQPQATXXXXXXXXX 779
PKDAN +G SY+++MD +RYMQ Q +
Sbjct: 188 PKDANPGAGSRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGS 247
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNTSYGNDPPGS-KS 602
NV N YG+ P G ++
Sbjct: 248 SGYNNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPTAVAYGNPNVANAGYGSGPQGGPRN 307
Query: 601 SWSGQAPSGYGSAPYG-------------GTGFAAPGQSPSG------TAAYGNKDFXXX 479
SWSGQAPSGYG+ YG G G PG +P+G A YGN+ +
Sbjct: 308 SWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYG 367
Query: 478 XXXXXXYENQNSYNAGRGGHANNSGNSGYTSTAWSSDPSQNGN 350
Y G GG + SGY +T S + N N
Sbjct: 368 GF------GNQGYGYG-GGDGSYGSQSGYGTTGGRSGSASNSN 403
Score = 70.9 bits (172), Expect(2) = 2e-78
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = -2
Query: 1527 TTEEKLSEYFGNYGQVLQTVVMKDKVTDRPRGFGFVVFADP 1405
T+E+KL +YF NYG+V+ TVVM+DK+T RPRGFGFVVF+DP
Sbjct: 17 TSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDP 57
Score = 73.9 bits (180), Expect = 1e-10
Identities = 36/79 (45%), Positives = 49/79 (62%)
Frame = -1
Query: 1171 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 992
K+F+GG+ +E+ + YF YG V VVM D+ T RPRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
Query: 991 SFHDLNGKNVEVKRALPKD 935
H ++GK VE KRAL ++
Sbjct: 67 K-HTIDGKTVEAKRALSRE 84