BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001642
         (1937 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257...   331   4e-88
emb|CBI27747.3| unnamed protein product [Vitis vinifera]              297   6e-78
ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|2...   279   2e-72
ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, puta...   275   2e-71
gb|AFW71893.1| putative HLH DNA-binding domain superfamily prote...   231   7e-58

>ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257707 [Vitis vinifera]
          Length = 536

 Score =  331 bits (849), Expect = 4e-88
 Identities = 229/553 (41%), Positives = 294/553 (53%), Gaps = 46/553 (8%)
 Frame = -2

Query: 1870 MDEFLEQFLSSSPWSDVK----------------GLLLDTMGAYGEDEENITQSLIPSSL 1739
            MDE+L+   SS+ WSDV                 G+L D++G Y  D++N    +  S+L
Sbjct: 1    MDEYLDHLFSSTSWSDVNVKEGSSWICGEPSQTNGMLSDSIGIYEGDKKNSPVGMTNSNL 60

Query: 1738 IVDNLITQKTXXXXXXXXXXD-LEKSLRSGESKPRQGGTGHGSKPSLLGVLDMQSNTSST 1562
            +++ L+TQ T            L K L   E+  +Q         SL G ++  S     
Sbjct: 61   MIEGLVTQDTSSIVLGGESDHGLGKGLLLEEAPRQQDLQNTEGNSSLNGAVNGSSEVGYV 120

Query: 1561 LGALNQPEITPVLVDPAN----------SSSVQP--ESGSVGSNDSELSEIHPPIIDSHC 1418
               LN P  TP  +D  +          S S +P  E   VG N +E S+    + +   
Sbjct: 121  GLQLNTPTSTPCSLDLGSPKQLSLIGGMSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQA 180

Query: 1417 RSSVPQLWP-PSYRGVSSLFPVVGQDKPQGFGFQRQYVETDAAVLGSKYF-DDTIQQGNL 1244
               +PQLW  PSY G SSL PV+G+ K QGFG Q +YV+ +  ++ ++Y  D+ +Q  N+
Sbjct: 181  LPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVGDEILQLDNI 240

Query: 1243 PASLP--EQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQ 1070
             +++P   + E + H     A G           H  M  S L              +PQ
Sbjct: 241  SSAIPIKGKEEQHTHPFSPSAVGP----------HMTMTASGLQS------------LPQ 278

Query: 1069 LPHTPNTASGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPSSNKTD 890
               T  TASG CNG  K RVRARRGQATDPHSIAERLRREKIAERMKNLQELVP+SNKTD
Sbjct: 279  T--TVGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD 336

Query: 889  KASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAVVPLITDSRAEGSTGFHLSQSTGRGVNP 710
            KASMLDEIIEYVKFLQLQVKVLSMSRLGAA AVVPLITD +AEGS G  LS S G+  + 
Sbjct: 337  KASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQAEGSKGLSLSPSAGQAEDI 396

Query: 709  FKSPDDLAFEEEVVKLMESDMTTAMQFLQSKGLCFMPIALXXXXXXXXXXXXXXXADEKE 530
             +SPD +AFE+EVVKLMES++T AMQ+LQSKGLC MPIAL               +DE +
Sbjct: 397  CQSPDQIAFEQEVVKLMESNVTMAMQYLQSKGLCLMPIALATAISSGKAASSGTGSDEGK 456

Query: 529  SILTNGLAHHNNCQ-------------PSVGTGQRCFDGDNGLKDSMNGICREEDTPTKG 389
            + L  G   +NN               P +GT     DG     + + G    E   T  
Sbjct: 457  NGLIGGFIPNNNSSSNTSSSNTSSNSLPGIGTHHTSSDG-----NVLIGKLSREGITTSS 511

Query: 388  CDVTMIKREGVNS 350
            C+  + K+E + S
Sbjct: 512  CNGAINKQEELKS 524


>emb|CBI27747.3| unnamed protein product [Vitis vinifera]
          Length = 389

 Score =  297 bits (761), Expect = 6e-78
 Identities = 190/405 (46%), Positives = 235/405 (58%), Gaps = 17/405 (4%)
 Frame = -2

Query: 1513 ANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRSSVPQLWP-PSYRGVSSLFPVVGQDKP 1337
            + SS    E   VG N +E S+    + +      +PQLW  PSY G SSL PV+G+ K 
Sbjct: 2    SRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKM 61

Query: 1336 QGFGFQRQYVETDAAVLGSKYF-DDTIQQGNLPASLP--EQNEMNNHYMCSFAAGHQIPL 1166
            QGFG Q +YV+ +  ++ ++Y  D+ +Q  N+ +++P   + E + H     A G     
Sbjct: 62   QGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKGKEEQHTHPFSPSAVGP---- 117

Query: 1165 GRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQLPHTPNTASGDCNGAAKHRVRARRGQAT 986
                  H  M  S L              +PQ   T  TASG CNG  K RVRARRGQAT
Sbjct: 118  ------HMTMTASGLQS------------LPQT--TVGTASGGCNGTGKPRVRARRGQAT 157

Query: 985  DPHSIAERLRREKIAERMKNLQELVPSSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLG 806
            DPHSIAERLRREKIAERMKNLQELVP+SNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLG
Sbjct: 158  DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLG 217

Query: 805  AAGAVVPLITDSRAEGSTGFHLSQSTGRGVNPFKSPDDLAFEEEVVKLMESDMTTAMQFL 626
            AA AVVPLITD +AEGS G  LS S G+  +  +SPD +AFE+EVVKLMES++T AMQ+L
Sbjct: 218  AAEAVVPLITDGQAEGSKGLSLSPSAGQAEDICQSPDQIAFEQEVVKLMESNVTMAMQYL 277

Query: 625  QSKGLCFMPIALXXXXXXXXXXXXXXXADEKESILTNGLAHHNNCQ-------------P 485
            QSKGLC MPIAL               +DE ++ L  G   +NN               P
Sbjct: 278  QSKGLCLMPIALATAISSGKAASSGTGSDEGKNGLIGGFIPNNNSSSNTSSSNTSSNSLP 337

Query: 484  SVGTGQRCFDGDNGLKDSMNGICREEDTPTKGCDVTMIKREGVNS 350
             +GT     DG     + + G    E   T  C+  + K+E + S
Sbjct: 338  GIGTHHTSSDG-----NVLIGKLSREGITTSSCNGAINKQEELKS 377


>ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|222833343|gb|EEE71820.1|
            predicted protein [Populus trichocarpa]
          Length = 456

 Score =  279 bits (713), Expect = 2e-72
 Identities = 174/367 (47%), Positives = 222/367 (60%), Gaps = 5/367 (1%)
 Frame = -2

Query: 1675 LEKSLRSGESKPRQGGTGHGSKPSLLGVLDMQSN-TSSTLGALNQPEITPVLVDPANSSS 1499
            L+   ++    P   G   G+     G   +Q N    TL +LN P   P++ D  +  S
Sbjct: 40   LQNDCQNCNGNPSPDGMARGNLK--FGNTGLQCNGILPTLSSLNYPNQLPIVGDLTSYLS 97

Query: 1498 VQPESGSVGSNDSELSEIHPPIIDSHCRSSVPQLWPP-SYRGVSSLFPVVGQDKPQGFGF 1322
               E+ + G N  E SE    + +    SS+PQLWP  SY GVSSL P++GQD+ +G G 
Sbjct: 98   FS-EASNAGCNGREQSEYLRSLKNLQNLSSIPQLWPSQSYEGVSSLPPLMGQDRIEGSGL 156

Query: 1321 QRQYVETDAAVLGSKYF--DDTIQQGNLPASLPEQNEMNNHYMCSFAAGHQIPLGRTAEI 1148
            +   ++ D  ++G  Y   D+ ++   L AS P      +   C F++G        AE 
Sbjct: 157  RGGNLDDDMHIMGKGYMGMDEILRLDKLSAS-PTTEGKEDLQSCPFSSG-------IAEP 208

Query: 1147 HSQMQLSYLTGGNSIKHYADQTPIPQLPHTPNTASGD-CNGAAKHRVRARRGQATDPHSI 971
            +  M ++ L+                +P T + A  + CNG  K RVRARRG ATDPHSI
Sbjct: 209  NVNMSMNQLSS---------------MPQTTSAAPVEGCNGTGKTRVRARRGHATDPHSI 253

Query: 970  AERLRREKIAERMKNLQELVPSSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAV 791
            AERLRREKIAERMKNLQELVP+SNK DKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAV
Sbjct: 254  AERLRREKIAERMKNLQELVPNSNKVDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAV 313

Query: 790  VPLITDSRAEGSTGFHLSQSTGRGVNPFKSPDDLAFEEEVVKLMESDMTTAMQFLQSKGL 611
            +PL+TD + EG     LS S G G++   S D +AFE+EV+KL+ESD+T AMQ+LQSKGL
Sbjct: 314  IPLLTDGQPEGHNSLSLSPSAGLGIDISPSADQIAFEQEVLKLLESDVTMAMQYLQSKGL 373

Query: 610  CFMPIAL 590
            C MPIAL
Sbjct: 374  CLMPIAL 380


>ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
            gi|223544687|gb|EEF46203.1| DNA-directed RNA polymerase
            beta chain, putative [Ricinus communis]
          Length = 592

 Score =  275 bits (704), Expect = 2e-71
 Identities = 207/527 (39%), Positives = 274/527 (51%), Gaps = 33/527 (6%)
 Frame = -2

Query: 1870 MDEFLEQFLSSSPWSD----------------VKGLLLDTMGAYGEDEENITQSLIPSSL 1739
            MDE++++  SSSPW+D                +   +  ++  +  D+ N   S+  S  
Sbjct: 59   MDEYIDRLFSSSPWADGDAKERSCWDYSETGQLNVSVSTSLRLHENDKGNSLLSVTSSEQ 118

Query: 1738 IVDNLITQKTXXXXXXXXXXDL-EKSLRSGESKPRQGGTG--HGSKPSLLGVLDMQS--- 1577
             +D L  Q T           + +K L SG+++ ++ G    H   P + G L M++   
Sbjct: 119  NIDCLPAQDTPSLGLDSESDYVVDKGLFSGKAQSQKEGQNCNHDPSPMINGSLKMKNMGL 178

Query: 1576 NTSSTLGALNQPEIT-----PVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRS 1412
               + L  LN   ++     PVL D  +  S   ++   G NDS   E      D    S
Sbjct: 179  QYDTALPTLNSVGLSYSKQLPVLDDLTSPLSFT-KANRAGLNDSARFEYQRSFKDVQNPS 237

Query: 1411 SVPQLWPP-SYRGVSSLFPVVGQDKPQGFGFQRQYVETDAAVLGSKYF--DDTIQQGNLP 1241
            S+ QLWP  S+  VSSL   +GQD  Q F  Q    + D   LG +Y   D+ +Q   L 
Sbjct: 238  SMTQLWPSTSFEDVSSLSAAMGQDTTQQFDLQGNLGD-DLDFLGRRYISMDNILQLDKLS 296

Query: 1240 ASLPEQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQLPH 1061
            AS+  +++ N         G+  PL R   + S M ++  T G           +  L  
Sbjct: 297  ASVVSKDKEN-------LQGY--PLSRFT-VGSNMTMT--TNG-----------VSYLSQ 333

Query: 1060 TPNTA-SGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPSSNKTDKA 884
            T +TA +  CNG  K RVRARRGQATDPHSIAERLRREKIAERMKNLQELVP+S+K DKA
Sbjct: 334  TASTAPAASCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSSKVDKA 393

Query: 883  SMLDEIIEYVKFLQLQVKVLSMSRLGAAGAVVPLITDSRAEGSTGFHLSQSTGRGVNPFK 704
            SMLDEIIEYVKFLQLQVKVLSMSRLGA GAV+PLITD +AEGS    LS S G G++   
Sbjct: 394  SMLDEIIEYVKFLQLQVKVLSMSRLGATGAVIPLITDGQAEGSNSLSLSTSAGLGIDVAP 453

Query: 703  SPDDLAFEEEVVKLMESDMTTAMQFLQSKGLCFMPIALXXXXXXXXXXXXXXXADEKESI 524
            S D +AFE EV+KL+ES++T A+Q+LQ KG C MPIAL                D+K+ I
Sbjct: 454  SSDQIAFEHEVLKLLESNVTKAIQYLQGKGFCLMPIALAAAISSGKASLSCNSPDDKKKI 513

Query: 523  LTN-GLAHHNNCQPSVGTGQRC-FDGDNGLKDSMNGICREEDTPTKG 389
              N  + H NN      +   C F G    + S +     E   +KG
Sbjct: 514  RFNTDIVHDNNGSSRSSSSSSCNFSGTETCQVSYDCNIMTEQLGSKG 560


>gb|AFW71893.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
          Length = 489

 Score =  231 bits (588), Expect = 7e-58
 Identities = 165/364 (45%), Positives = 201/364 (55%), Gaps = 30/364 (8%)
 Frame = -2

Query: 1591 LDMQSNTSSTLGALNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRS 1412
            L  + N++   G L      P  V  A+S+ V   S +  S  SE S + PP        
Sbjct: 95   LGFEVNSALVAGMLGPVLSAPCAVSLADSAPVVCSSSNDSSGGSEQSGLPPPP-RFLVLG 153

Query: 1411 SVPQLWPPSYRGVSSLFPVVGQDKPQGFGFQRQYVETDAAVLGSKYFDDTI---QQGNLP 1241
              P  WP ++  +SSL    G++  + FGF    V  +  V GS    D     Q GN  
Sbjct: 154  EQPASWPSAFPRISSL---AGEETSRSFGFGA--VSDNDLVRGSSCVADVNKYPQIGNAR 208

Query: 1240 ASLPEQNEMNNHYMCSFAAG--------HQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQ 1085
              + +  E N   M SFA G         Q  L     ++S  QLS      + +  +++
Sbjct: 209  LHVEDDVEFNTGKMLSFAPGLDFGDLQLSQKELSGLRHLNSGQQLSSFDATRNPEQSSNE 268

Query: 1084 TP-------IPQLPHTPNTASGDCNGAAKHRVRARRGQATDPHSIAERLRREKIAERMKN 926
                      P      N A+G  NGA K RVRARRGQATDPHSIAERLRREKI++RMKN
Sbjct: 269  ASGGGTGLNAPPFMVPANGAAG--NGAPKPRVRARRGQATDPHSIAERLRREKISDRMKN 326

Query: 925  LQELVPSSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAGAVVPLITDSRAEGSTGF 746
            LQELVP+SN+TDKASMLDEIIEYVKFLQLQVKVLSMSRLGA  AVVPL+T S+ E S G 
Sbjct: 327  LQELVPNSNRTDKASMLDEIIEYVKFLQLQVKVLSMSRLGATEAVVPLLTQSQTENSGGG 386

Query: 745  HL----------SQSTGRGVNPFKSP--DDLAFEEEVVKLMESDMTTAMQFLQSKGLCFM 602
             L           Q+ G  + P  S   D  AFE+EV +LMESDMTTAMQ+LQSKGLC M
Sbjct: 387  LLLSPRSGSGRQQQARGGSLPPPSSEVRDGAAFEQEVAQLMESDMTTAMQYLQSKGLCLM 446

Query: 601  PIAL 590
            P+AL
Sbjct: 447  PVAL 450