BLASTX nr result

ID: Coptis21_contig00001616 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001616
         (2156 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272471.1| PREDICTED: scarecrow-like protein 8-like [Vi...   422   e-115
ref|XP_002513664.1| DELLA protein GAI, putative [Ricinus communi...   407   e-111
ref|XP_002305914.1| GRAS family transcription factor [Populus tr...   393   e-106
gb|ABK94962.1| unknown [Populus trichocarpa]                          393   e-106
ref|XP_002327470.1| GRAS family transcription factor [Populus tr...   391   e-106

>ref|XP_002272471.1| PREDICTED: scarecrow-like protein 8-like [Vitis vinifera]
          Length = 614

 Score =  422 bits (1085), Expect = e-115
 Identities = 213/368 (57%), Positives = 275/368 (74%), Gaps = 4/368 (1%)
 Frame = -1

Query: 1262 DIANAISEGNTDVAVLKLETLKQVCNLRGDSEQRFTSYMVSALRSKINPTENPPPIQELF 1083
            + A+AISEG  D A+  L  L  V N RG+SEQR  +YM SAL+S+++  ENPPP+ EL+
Sbjct: 250  EAASAISEGMLDAAMESLTRLTLVANARGNSEQRLAAYMASALKSRLSAAENPPPVAELY 309

Query: 1082 SNDHVIATQMLFEASPCFKYGFMASNLAIVEATTRSNV---IHVLDFDIGQGSQYTTLIH 912
            S DH++ATQML++ SPCFK GFMA+NLAI+E T+        HVLDFDIGQG QY  L+H
Sbjct: 310  SKDHIMATQMLYDMSPCFKLGFMAANLAILETTSSEQSAAKFHVLDFDIGQGGQYVNLVH 369

Query: 911  AMAEKHQSRGIPIFIKITSVVLNQDYSVKQDQRM-VGDGLKKLADRVGLGFRFNIVEKPI 735
            A+  +   +   +  KIT++    +     D+R+ VG+ L +LA+R+ +  +F +V   I
Sbjct: 370  ALGARQNGKHTSL--KITTIADPSNGGT--DERLKVGEDLSQLAERLCISLKFKVVTHKI 425

Query: 734  FELSQETLGIESDEALVVNFAFRLFKLSDESVSTENQRDELLRLVKSFSPRVVTLLEQEM 555
             ELS+E+LG ESDE LVVN AF+L+K+ DESV+TEN RDELLR VKS  PRVVT++EQEM
Sbjct: 426  HELSRESLGCESDEVLVVNLAFKLYKMPDESVTTENPRDELLRRVKSLQPRVVTVVEQEM 485

Query: 554  SSNTASFVARVGEVSSYYLALFNSLDSTINRDGPERVKIEECLGRKAANSVACEGKERVE 375
            ++NTA F+ RV E  +YY AL +SLDST++RD  ERV++EECLGRK ANSVACEG++RVE
Sbjct: 486  NANTAPFLTRVNEACAYYGALLDSLDSTVSRDRSERVQVEECLGRKLANSVACEGRDRVE 545

Query: 374  RCEVFGKWRARMKMAGFVTRPLGQHVAESMKSRLNTKYKNNSGFTVKEESDGICFGWLDR 195
            RCEVFGKWRARM MAGF  RP+ QH+A+SM+SR+N+  + N GFTVKEE+ GICFGW  R
Sbjct: 546  RCEVFGKWRARMGMAGFEPRPMSQHIADSMRSRVNSHQRGNPGFTVKEETGGICFGWNGR 605

Query: 194  VLTVASAW 171
             LTVASAW
Sbjct: 606  TLTVASAW 613


>ref|XP_002513664.1| DELLA protein GAI, putative [Ricinus communis]
            gi|223547572|gb|EEF49067.1| DELLA protein GAI, putative
            [Ricinus communis]
          Length = 615

 Score =  407 bits (1045), Expect = e-111
 Identities = 205/368 (55%), Positives = 274/368 (74%), Gaps = 4/368 (1%)
 Frame = -1

Query: 1262 DIANAISEGNTDVAVLKLETLKQVCNLRGDSEQRFTSYMVSALRSKINPTENPPPIQELF 1083
            + A+AI +G T+VA   L  + QV N RG+SEQR   YM  AL+S++N  +NPPP+ ELF
Sbjct: 250  EAASAIYDGKTEVASEILTRVSQVSNPRGNSEQRLMEYMSMALKSRLNSADNPPPVAELF 309

Query: 1082 SNDHVIATQMLFEASPCFKYGFMASNLAIVEATT----RSNVIHVLDFDIGQGSQYTTLI 915
            + +H+ +TQ+L+E SPCFK GFMA+NLAI+++T          HV+DFDIGQG QY  L+
Sbjct: 310  AKEHIASTQLLYELSPCFKLGFMAANLAILQSTVDQPNSGTGFHVIDFDIGQGCQYLNLL 369

Query: 914  HAMAEKHQSRGIPIFIKITSVVLNQDYSVKQDQRMVGDGLKKLADRVGLGFRFNIVEKPI 735
            HA++E+    G P  +KIT+V  N     K+  ++VG  L +LA++ G+   FN+V   +
Sbjct: 370  HALSER--LNGKPATVKITAVADNSAEE-KERLKVVGTTLSQLAEQFGVSLHFNVVSAKL 426

Query: 734  FELSQETLGIESDEALVVNFAFRLFKLSDESVSTENQRDELLRLVKSFSPRVVTLLEQEM 555
             +LS+E+LG E +E L VNFAF L+++ DESVSTEN RDELLR VK  +PRVVTL+EQEM
Sbjct: 427  GDLSRESLGCEPEEPLAVNFAFNLYRMPDESVSTENPRDELLRRVKGLAPRVVTLVEQEM 486

Query: 554  SSNTASFVARVGEVSSYYLALFNSLDSTINRDGPERVKIEECLGRKAANSVACEGKERVE 375
            ++NTA F+ARV E SSYY ALF S++ST+ RD  ERVK+EE LGRK ANSVACEG++RVE
Sbjct: 487  NTNTAPFMARVNEGSSYYGALFESIESTVQRDHTERVKVEEGLGRKLANSVACEGRDRVE 546

Query: 374  RCEVFGKWRARMKMAGFVTRPLGQHVAESMKSRLNTKYKNNSGFTVKEESDGICFGWLDR 195
            RCEVFGKWRARM MAGF  +P+ Q++AES+K+RL++  + N GFTVKE++ G+CFGW+ +
Sbjct: 547  RCEVFGKWRARMGMAGFELKPVSQNIAESLKARLSSGNRVNPGFTVKEDNGGVCFGWMGK 606

Query: 194  VLTVASAW 171
             LTVASAW
Sbjct: 607  TLTVASAW 614


>ref|XP_002305914.1| GRAS family transcription factor [Populus trichocarpa]
            gi|222848878|gb|EEE86425.1| GRAS family transcription
            factor [Populus trichocarpa]
          Length = 640

 Score =  393 bits (1009), Expect = e-106
 Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 9/373 (2%)
 Frame = -1

Query: 1262 DIANAISEGNTDVAVLKLETLKQVCNLRGDSEQRFTSYMVSALRSKINPTENPPPIQELF 1083
            + A+AI EG TDV    L  +  V +  G+SEQR   YM+ AL+S++N +EN   + EL+
Sbjct: 269  EAASAIYEGKTDVYTEILTRVSLVSSPGGNSEQRLIEYMLMALKSRLNSSENTTSVMELY 328

Query: 1082 SNDHVIATQMLFEASPCFKYGFMASNLAIVEAT--------TRSNVIHVLDFDIGQGSQY 927
            S +HV ATQ+L++ SPCFK GFMA+NLAI++AT        T SN  HV+DFDIG G QY
Sbjct: 329  SKEHVDATQLLYDLSPCFKLGFMAANLAIIDATREQEQEANTSSNGFHVVDFDIGHGGQY 388

Query: 926  TTLIHAMAEKHQSRGIPIFIKITSVVLNQDYSVKQDQRMVGDGLKKLADRVGLGFRFNIV 747
              L+HA++    S+  P  +KIT+V  + +   ++  R+VG+ L +LA RVGL   FN+V
Sbjct: 389  KNLLHALSGLQNSK--PAIVKITAVAADSNGVEEERLRLVGETLTQLARRVGLNLCFNVV 446

Query: 746  EKPIFELSQETLGIESDEALVVNFAFRLFKLSDESVS-TENQRDELLRLVKSFSPRVVTL 570
               + EL++E+LG E DEAL VNFAF+L+++ DESVS TEN RDELLR VK  +PRVVT+
Sbjct: 447  SCKLSELTRESLGCEPDEALAVNFAFKLYRMPDESVSSTENPRDELLRRVKGLAPRVVTV 506

Query: 569  LEQEMSSNTASFVARVGEVSSYYLALFNSLDSTINRDGPERVKIEECLGRKAANSVACEG 390
            +EQEM++NTA F+ARV E  SYY ALF+S++ST+  D  ER K+EE LGR+  NSVACEG
Sbjct: 507  VEQEMNTNTAPFMARVNESCSYYGALFDSIESTVKGDNSERAKVEEGLGRRMVNSVACEG 566

Query: 389  KERVERCEVFGKWRARMKMAGFVTRPLGQHVAESMKSRLNTKYKNNSGFTVKEESDGICF 210
            ++RVERCEVFGKWRARM MAGF  +PL  ++AESMK+RL+   + N GF+VKEE+ G+CF
Sbjct: 567  RDRVERCEVFGKWRARMGMAGFELKPLSHNIAESMKTRLSLANRVNPGFSVKEENGGVCF 626

Query: 209  GWLDRVLTVASAW 171
            GW+ + LTVASAW
Sbjct: 627  GWMGKTLTVASAW 639


>gb|ABK94962.1| unknown [Populus trichocarpa]
          Length = 521

 Score =  393 bits (1009), Expect = e-106
 Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 9/373 (2%)
 Frame = -1

Query: 1262 DIANAISEGNTDVAVLKLETLKQVCNLRGDSEQRFTSYMVSALRSKINPTENPPPIQELF 1083
            + A+AI EG TDV    L  +  V +  G+SEQR   YM+ AL+S++N +EN   + EL+
Sbjct: 150  EAASAIYEGKTDVYTEILTRVSLVSSPGGNSEQRLIEYMLMALKSRLNSSENTTSVMELY 209

Query: 1082 SNDHVIATQMLFEASPCFKYGFMASNLAIVEAT--------TRSNVIHVLDFDIGQGSQY 927
            S +HV ATQ+L++ SPCFK GFMA+NLAI++AT        T SN  HV+DFDIG G QY
Sbjct: 210  SKEHVDATQLLYDLSPCFKLGFMAANLAIIDATREQEQEANTSSNGFHVVDFDIGHGGQY 269

Query: 926  TTLIHAMAEKHQSRGIPIFIKITSVVLNQDYSVKQDQRMVGDGLKKLADRVGLGFRFNIV 747
              L+HA++    S+  P  +KIT+V  + +   ++  R+VG+ L +LA RVGL   FN+V
Sbjct: 270  KNLLHALSGLQNSK--PAIVKITAVAADSNGVEEERLRLVGETLTQLARRVGLNLCFNVV 327

Query: 746  EKPIFELSQETLGIESDEALVVNFAFRLFKLSDESVS-TENQRDELLRLVKSFSPRVVTL 570
               + EL++E+LG E DEAL VNFAF+L+++ DESVS TEN RDELLR VK  +PRVVT+
Sbjct: 328  SCKLSELTRESLGCEPDEALAVNFAFKLYRMPDESVSSTENPRDELLRRVKGLAPRVVTV 387

Query: 569  LEQEMSSNTASFVARVGEVSSYYLALFNSLDSTINRDGPERVKIEECLGRKAANSVACEG 390
            +EQEM++NTA F+ARV E  SYY ALF+S++ST+  D  ER K+EE LGR+  NSVACEG
Sbjct: 388  VEQEMNTNTAPFMARVNESCSYYGALFDSIESTVKGDNSERAKVEEGLGRRMVNSVACEG 447

Query: 389  KERVERCEVFGKWRARMKMAGFVTRPLGQHVAESMKSRLNTKYKNNSGFTVKEESDGICF 210
            ++RVERCEVFGKWRARM MAGF  +PL  ++AESMK+RL+   + N GF+VKEE+ G+CF
Sbjct: 448  RDRVERCEVFGKWRARMGMAGFELKPLSHNIAESMKTRLSLANRVNPGFSVKEENGGVCF 507

Query: 209  GWLDRVLTVASAW 171
            GW+ + LTVASAW
Sbjct: 508  GWMGKTLTVASAW 520


>ref|XP_002327470.1| GRAS family transcription factor [Populus trichocarpa]
            gi|222836024|gb|EEE74445.1| GRAS family transcription
            factor [Populus trichocarpa]
          Length = 666

 Score =  391 bits (1004), Expect = e-106
 Identities = 202/373 (54%), Positives = 268/373 (71%), Gaps = 9/373 (2%)
 Frame = -1

Query: 1262 DIANAISEGNTDVAVLKLETLKQVCNLRGDSEQRFTSYMVSALRSKINPTENPPPIQELF 1083
            + A+AI EG TDV    L  + QV N +G+S QR   YM+ AL+S++N  E  P ++EL+
Sbjct: 295  EAASAIYEGKTDVYPEILSRICQVANPQGNSGQRLMEYMLMALKSRVNSAEKTPSVRELY 354

Query: 1082 SNDHVIATQMLFEASPCFKYGFMASNLAIVEATTR--------SNVIHVLDFDIGQGSQY 927
            + +HV ATQ L++ SPCFK GFMA+NLAI+EAT          SN  HV+DFDIGQG QY
Sbjct: 355  NKEHVDATQSLYDLSPCFKLGFMAANLAIIEATREQGREMNSCSNGFHVVDFDIGQGGQY 414

Query: 926  TTLIHAMAEKHQSRGIPIFIKITSVVLNQDYSVKQDQ-RMVGDGLKKLADRVGLGFRFNI 750
              L+HA++     +  P  +KIT+V  + +   ++++ R+VG+ L +LA R+ L   FN+
Sbjct: 415  MNLLHALSGLQNLK--PAIVKITAVAADSNGGEEKERLRLVGETLSQLAQRLRLSLCFNV 472

Query: 749  VEKPIFELSQETLGIESDEALVVNFAFRLFKLSDESVSTENQRDELLRLVKSFSPRVVTL 570
            V   + ELS+E+LG E +EAL VNFAF+L+++ DESVSTEN RDELLR VK   PRVVT+
Sbjct: 473  VSCRLSELSRESLGCEPEEALAVNFAFKLYRMPDESVSTENPRDELLRRVKGLGPRVVTI 532

Query: 569  LEQEMSSNTASFVARVGEVSSYYLALFNSLDSTINRDGPERVKIEECLGRKAANSVACEG 390
            +EQEM++NTA F+ARV E  SYY ALF+S++ST+ RD  ER ++EE LGR   NSVACEG
Sbjct: 533  VEQEMNTNTAPFMARVNESCSYYGALFDSINSTMERDSSERARVEEGLGRTIVNSVACEG 592

Query: 389  KERVERCEVFGKWRARMKMAGFVTRPLGQHVAESMKSRLNTKYKNNSGFTVKEESDGICF 210
            ++R+ERCEVFGKWRARM MAGF  +P+ Q VAESMK+RL+   + N GFTVKEE+ G+CF
Sbjct: 593  RDRIERCEVFGKWRARMGMAGFELKPMSQIVAESMKARLSLTNRVNPGFTVKEENGGVCF 652

Query: 209  GWLDRVLTVASAW 171
            GW  + LTVASAW
Sbjct: 653  GWKGKTLTVASAW 665


Top