BLASTX nr result

ID: Coptis21_contig00001575 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001575
         (1101 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308177.1| predicted protein [Populus trichocarpa] gi|2...    60   7e-07
ref|XP_002534277.1| conserved hypothetical protein [Ricinus comm...    59   3e-06
ref|XP_002322919.1| predicted protein [Populus trichocarpa] gi|2...    57   8e-06

>ref|XP_002308177.1| predicted protein [Populus trichocarpa] gi|222854153|gb|EEE91700.1|
           predicted protein [Populus trichocarpa]
          Length = 100

 Score = 60.5 bits (145), Expect = 7e-07
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = +2

Query: 155 MEGVIPSVYRAIVRYKSSKHGSIARSWSTQSPSSASYMRL-GDSGRIQASEVQL 313
           MEG+IP VYRAI++YK+ K      SW  +SP SASYMRL GDSGR Q S++++
Sbjct: 1   MEGLIPFVYRAIIQYKNGKEAGPLGSWFNESP-SASYMRLPGDSGRFQTSDIRI 53


>ref|XP_002534277.1| conserved hypothetical protein [Ricinus communis]
           gi|223525593|gb|EEF28108.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 106

 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 32/55 (58%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
 Frame = +2

Query: 155 MEGVIPSVYRAIVRYKSSKHGSIARSWSTQSPSSASYMRL--GDSGRIQASEVQL 313
           MEG+IP VYRAI++YK+   G +  SW  +SPSS  YMRL  GDSGR QAS+++L
Sbjct: 1   MEGLIPFVYRAIMQYKNGNEGPLG-SWLNESPSSC-YMRLPTGDSGRFQASDIRL 53


>ref|XP_002322919.1| predicted protein [Populus trichocarpa] gi|222867549|gb|EEF04680.1|
           predicted protein [Populus trichocarpa]
          Length = 99

 Score = 57.0 bits (136), Expect = 8e-06
 Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
 Frame = +2

Query: 155 MEGVIPSVYRAIVRYKSSKHGSIARSWSTQSPSSASYMRL-GDSGRIQASEVQLL 316
           MEG+IP VYRAI+++ + K      SW ++SP SASYMRL GDSGR Q S++++L
Sbjct: 1   MEGLIPFVYRAIMQFNNGKEAGPLGSWFSESP-SASYMRLPGDSGRFQKSDLRIL 54


Top