BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001527
         (858 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...   296   4e-78
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   292   6e-77
gb|AAF19793.1|AF162210_1 ribulose-1,5-bisphosphate carboxylase/o...   286   3e-75
sp|Q40250.1|RBS_LACSA RecName: Full=Ribulose bisphosphate carbox...   285   9e-75
gb|AEX60841.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...   283   3e-74

>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Aralia elata]
          Length = 183

 Score =  296 bits (758), Expect = 4e-78
 Identities = 140/174 (80%), Positives = 158/174 (90%), Gaps = 1/174 (0%)
 Frame = -2

Query: 773 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLPSNGGRVHCMQVWPI 594
           I SA++A+V+R  PAQASMVAPFTGLKSTAAFPVTRK+N DITSLPSNGGRV CM+VWP 
Sbjct: 6   ISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVN-DITSLPSNGGRVQCMKVWPP 64

Query: 593 IGLKKFETLSYLPTLSTESLAKEVDYLIKNGWIPCLEFSLE-GYITRKYHASPGYYDGRY 417
           +GLKKFETLSYLP L+ E LAKEVDYL+++GW+PCLEF LE G++ R+ H SPGYYDGRY
Sbjct: 65  LGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYYDGRY 124

Query: 416 WTMWKLPMYGCTDSSQVLNEVEECKKEYPKAFVRIIGFDNKRQVQCISFMAFKP 255
           WTMWKLPM+GCTDSSQVLNEVEECKKEYP AF+RIIGFDN RQVQCISF+AFKP
Sbjct: 125 WTMWKLPMFGCTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKP 178


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  292 bits (748), Expect = 6e-77
 Identities = 137/174 (78%), Positives = 157/174 (90%), Gaps = 1/174 (0%)
 Frame = -2

Query: 773 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLPSNGGRVHCMQVWPI 594
           I SA +A+V+R  PAQASMVAPFTGLKSTAAFPVTRK+N DITSLPSNGGRV CM+VWP 
Sbjct: 6   ISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKVN-DITSLPSNGGRVQCMKVWPP 64

Query: 593 IGLKKFETLSYLPTLSTESLAKEVDYLIKNGWIPCLEFSLE-GYITRKYHASPGYYDGRY 417
           +GLKKFETLSYLP L+ E L+KEVDYL+++GW+PCLEF LE G++ R++H SPGYYDGRY
Sbjct: 65  LGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRY 124

Query: 416 WTMWKLPMYGCTDSSQVLNEVEECKKEYPKAFVRIIGFDNKRQVQCISFMAFKP 255
           WTMWKLPM+GCTDSSQVL EVEECKKEYP A++RIIGFDN RQVQCISF+AFKP
Sbjct: 125 WTMWKLPMFGCTDSSQVLKEVEECKKEYPNAYIRIIGFDNVRQVQCISFIAFKP 178


>gb|AAF19793.1|AF162210_1 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Lactuca sativa]
          Length = 181

 Score =  286 bits (733), Expect = 3e-75
 Identities = 131/177 (74%), Positives = 155/177 (87%), Gaps = 1/177 (0%)
 Frame = -2

Query: 782 MASIPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLPSNGGRVHCMQV 603
           MASI S+A+A+VNR TPAQAS+ APFTGLKS  AFPVT+K NND +SLPSNGGRV CM+V
Sbjct: 1   MASISSSAVATVNRSTPAQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKV 60

Query: 602 WPIIGLKKFETLSYLPTLSTESLAKEVDYLIKNGWIPCLEFSLE-GYITRKYHASPGYYD 426
           WP IGLKK+ETLSYLP LS E+L+KE+DYLI+N W+PCLEF LE G++ R++H SPGYYD
Sbjct: 61  WPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYD 120

Query: 425 GRYWTMWKLPMYGCTDSSQVLNEVEECKKEYPKAFVRIIGFDNKRQVQCISFMAFKP 255
           GRYWTMWKLPM+GCTDS+QV+ EV ECKKEYP AF+R+IGFD+ RQVQCISF+  KP
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>sp|Q40250.1|RBS_LACSA RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|217946|dbj|BAA03103.1|
           riburose-1,5-bisphosphate carboxylase/oxygenase small
           subunit precursor [Lactuca sativa]
          Length = 181

 Score =  285 bits (729), Expect = 9e-75
 Identities = 132/177 (74%), Positives = 153/177 (86%), Gaps = 1/177 (0%)
 Frame = -2

Query: 782 MASIPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLPSNGGRVHCMQV 603
           MASI S+AIA+VNR T  QAS+ APFTGLKS  AFPVT+K NND +SLPSNGGRV CM+V
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKV 60

Query: 602 WPIIGLKKFETLSYLPTLSTESLAKEVDYLIKNGWIPCLEFSLE-GYITRKYHASPGYYD 426
           WP IGLKK+ETLSYLP LS E+L+KE+DYLI+N WIPCLEF LE G++ R++H SPGYYD
Sbjct: 61  WPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYD 120

Query: 425 GRYWTMWKLPMYGCTDSSQVLNEVEECKKEYPKAFVRIIGFDNKRQVQCISFMAFKP 255
           GRYWTMWKLPM+GCTDS+QV+ EV ECKKEYP AF+R+IGFDN RQVQCISF+  KP
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>gb|AEX60841.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           (chloroplast) [Gossypium hirsutum]
           gi|406366462|gb|AFS41728.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit (chloroplast)
           [Gossypium hirsutum] gi|406366476|gb|AFS41735.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit (chloroplast) [Gossypium barbadense]
           gi|406366492|gb|AFS41743.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit (chloroplast)
           [Gossypium tomentosum] gi|406366506|gb|AFS41750.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit (chloroplast) [Gossypium mustelinum]
           gi|406366520|gb|AFS41757.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit (chloroplast)
           [Gossypium darwinii]
          Length = 182

 Score =  283 bits (725), Expect = 3e-74
 Identities = 134/175 (76%), Positives = 152/175 (86%), Gaps = 1/175 (0%)
 Frame = -2

Query: 773 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLPSNGGRVHCMQVWPI 594
           I SA IA+VNR +PAQA+MVAPFTGLKS +AFPVTRK NNDITSL SNGGRV CMQVWP 
Sbjct: 6   ISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPP 65

Query: 593 IGLKKFETLSYLPTLSTESLAKEVDYLIKNGWIPCLEFSL-EGYITRKYHASPGYYDGRY 417
           +G KKFETLSYLP L+   LAKEVDYL+++ WIPCLEF L EG++ RKY + P YYDGRY
Sbjct: 66  LGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRY 125

Query: 416 WTMWKLPMYGCTDSSQVLNEVEECKKEYPKAFVRIIGFDNKRQVQCISFMAFKPE 252
           WTMWKLPM+GCTDS+QVL E+EECKKEYP AF+RIIGFDN RQVQCISF+A+KPE
Sbjct: 126 WTMWKLPMFGCTDSAQVLKELEECKKEYPNAFIRIIGFDNVRQVQCISFIAYKPE 180