BLASTX nr result

ID: Coptis21_contig00001499 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001499
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK46994.1| unknown [Lotus japonicus]                              166   2e-39
gb|AFK36106.1| unknown [Lotus japonicus]                              166   2e-39
ref|XP_002524859.1| ribosomal protein L5, putative [Ricinus comm...   166   2e-39
ref|NP_566767.1| 60S ribosomal protein L5-1 [Arabidopsis thalian...   165   3e-39
ref|XP_002329431.1| predicted protein [Populus trichocarpa] gi|1...   165   3e-39

>gb|AFK46994.1| unknown [Lotus japonicus]
          Length = 302

 Score =  166 bits (420), Expect = 2e-39
 Identities = 79/93 (84%), Positives = 87/93 (93%)
 Frame = +3

Query: 36  MVFIKPTKSRAYYKRYQVKFRRRRAGKTDYRARIRLINQDKNKYGTPKYRFVVRFTNKDI 215
           MVF+K  KSRAY+KRYQVKF+RRR GKTDYRARIRLINQDKNKY TPKYRFVVRFTNKDI
Sbjct: 1   MVFVKSQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYSTPKYRFVVRFTNKDI 60

Query: 216 IAQIVSASIAGDMILTSAYAHELPRYGLDVGLT 314
            AQIVSA+IAGD++L SAYAHELPRYGL++GLT
Sbjct: 61  TAQIVSATIAGDIVLASAYAHELPRYGLEIGLT 93


>gb|AFK36106.1| unknown [Lotus japonicus]
          Length = 302

 Score =  166 bits (420), Expect = 2e-39
 Identities = 79/93 (84%), Positives = 87/93 (93%)
 Frame = +3

Query: 36  MVFIKPTKSRAYYKRYQVKFRRRRAGKTDYRARIRLINQDKNKYGTPKYRFVVRFTNKDI 215
           MVF+K  KSRAY+KRYQVKF+RRR GKTDYRARIRLINQDKNKY TPKYRFVVRFTNKDI
Sbjct: 1   MVFVKSQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYSTPKYRFVVRFTNKDI 60

Query: 216 IAQIVSASIAGDMILTSAYAHELPRYGLDVGLT 314
            AQIVSA+IAGD++L SAYAHELPRYGL++GLT
Sbjct: 61  TAQIVSATIAGDIVLASAYAHELPRYGLEIGLT 93


>ref|XP_002524859.1| ribosomal protein L5, putative [Ricinus communis]
           gi|223535822|gb|EEF37483.1| ribosomal protein L5,
           putative [Ricinus communis]
          Length = 299

 Score =  166 bits (419), Expect = 2e-39
 Identities = 78/93 (83%), Positives = 87/93 (93%)
 Frame = +3

Query: 36  MVFIKPTKSRAYYKRYQVKFRRRRAGKTDYRARIRLINQDKNKYGTPKYRFVVRFTNKDI 215
           M F+K  K++AY+KRYQVKF+RRRAGKTDYRARIRLINQDKNKY TPKYRFVVRFTNKDI
Sbjct: 1   MAFVKAQKTKAYFKRYQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 216 IAQIVSASIAGDMILTSAYAHELPRYGLDVGLT 314
           +AQIVSASIAGD++L +AYAHELP YGLDVGLT
Sbjct: 61  VAQIVSASIAGDIVLAAAYAHELPHYGLDVGLT 93


>ref|NP_566767.1| 60S ribosomal protein L5-1 [Arabidopsis thaliana]
           gi|108860938|sp|Q8LBI1.2|RL51_ARATH RecName: Full=60S
           ribosomal protein L5-1 gi|15809788|gb|AAL06822.1|
           AT5g39740/MKM21_30 [Arabidopsis thaliana]
           gi|17473632|gb|AAL38279.1| 60S ribosomal protein L5
           [Arabidopsis thaliana] gi|20148745|gb|AAM10263.1| 60S
           ribosomal protein L5 [Arabidopsis thaliana]
           gi|22530962|gb|AAM96985.1| putative ribosomal protein
           [Arabidopsis thaliana] gi|23198406|gb|AAN15730.1|
           putative ribosomal protein [Arabidopsis thaliana]
           gi|27311643|gb|AAO00787.1| ribosomal protein, putative
           [Arabidopsis thaliana] gi|30103105|gb|AAO73340.1|
           ribosomal protein L5 [Arabidopsis thaliana]
           gi|30984510|gb|AAP42718.1| At3g25520 [Arabidopsis
           thaliana] gi|332643498|gb|AEE77019.1| 60S ribosomal
           protein L5-1 [Arabidopsis thaliana]
          Length = 301

 Score =  165 bits (418), Expect = 3e-39
 Identities = 80/93 (86%), Positives = 86/93 (92%)
 Frame = +3

Query: 36  MVFIKPTKSRAYYKRYQVKFRRRRAGKTDYRARIRLINQDKNKYGTPKYRFVVRFTNKDI 215
           MVF+K TKS AY+KRYQVKFRRRR GKTDYRARIRLINQDKNKY TPKYRFVVRFTNKDI
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 216 IAQIVSASIAGDMILTSAYAHELPRYGLDVGLT 314
           +AQIVSASIAGD++  SAYAHELP+YGL VGLT
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLT 93


>ref|XP_002329431.1| predicted protein [Populus trichocarpa] gi|118486443|gb|ABK95061.1|
           unknown [Populus trichocarpa]
           gi|222870481|gb|EEF07612.1| predicted protein [Populus
           trichocarpa]
          Length = 297

 Score =  165 bits (418), Expect = 3e-39
 Identities = 80/93 (86%), Positives = 85/93 (91%)
 Frame = +3

Query: 36  MVFIKPTKSRAYYKRYQVKFRRRRAGKTDYRARIRLINQDKNKYGTPKYRFVVRFTNKDI 215
           M F K  KSRAY+KRYQVKF+RRRAGKTDYRARIRLINQDKNKY TPKYRFVVRFTNKDI
Sbjct: 1   MAFAKAQKSRAYFKRYQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 216 IAQIVSASIAGDMILTSAYAHELPRYGLDVGLT 314
           IAQI SASIAGD++L SAYAHELPRYGL+ GLT
Sbjct: 61  IAQIASASIAGDIVLASAYAHELPRYGLEAGLT 93


Top