BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001498
         (756 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   121   5e-48
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S...   121   1e-47
ref|XP_002277679.1| PREDICTED: transcription initiation factor I...   119   3e-47
ref|XP_002513521.1| transcription initiation factor iib, putativ...   120   3e-47
ref|XP_003578512.1| PREDICTED: transcription initiation factor I...   121   7e-47

>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
           gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|18481632|gb|AAL73491.1|AF464908_1 general
           transcription factor TFIIB [Oryza sativa]
           gi|50725809|dbj|BAD33339.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|50726577|dbj|BAD34211.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
           Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
           protein OsI_32170 [Oryza sativa Indica Group]
           gi|125606444|gb|EAZ45480.1| hypothetical protein
           OsJ_30135 [Oryza sativa Japonica Group]
           gi|347737122|gb|AEP20532.1| transcription factor [Oryza
           sativa Japonica Group]
          Length = 312

 Score =  121 bits (304), Expect(2) = 5e-48
 Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
 Frame = +3

Query: 42  QDQANEIYKKVVDHKSTRGRNRDAFLAACLFVACQQEHKPHTVKEIHSIANGATKKEIGR 221
           +D+ANEIYKKV D KS RGRN+DA LAACL++AC+QE +P TVKEI S+ANGATKKEIGR
Sbjct: 126 KDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGR 185

Query: 222 NKFFIEKQLK-EIGESMETGATYAGDFM 302
            K FI KQL+ E+G+SME G  +AGDF+
Sbjct: 186 AKEFIVKQLEVEMGQSMEMGTIHAGDFL 213



 Score = 96.3 bits (238), Expect(2) = 5e-48
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = +1

Query: 283 HMLGILWRFRSRLGMNHQAIKVAQEAVQNSKELDIRRNPTSVAAAVIYMITQLSDDRKFL 462
           H    L RF S LGMN+QA+K AQEAVQ S+ELDIRR+P S+AAAVIYMITQLSDD+K L
Sbjct: 208 HAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPL 267

Query: 463 KDVATATAVAEHNFNSIHR 519
           KD++ AT VAE    + ++
Sbjct: 268 KDISLATGVAEGTIRNSYK 286


>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
           gi|241923949|gb|EER97093.1| hypothetical protein
           SORBIDRAFT_02g031020 [Sorghum bicolor]
          Length = 312

 Score =  121 bits (304), Expect(2) = 1e-47
 Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
 Frame = +3

Query: 42  QDQANEIYKKVVDHKSTRGRNRDAFLAACLFVACQQEHKPHTVKEIHSIANGATKKEIGR 221
           +D+ANEIYKKV D KS RGRN+DA LAACL++AC+QE +P TVKEI S+ANGATKKEIGR
Sbjct: 126 KDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGR 185

Query: 222 NKFFIEKQLK-EIGESMETGATYAGDFM 302
            K FI KQL+ E+G+SME G  +AGDF+
Sbjct: 186 AKEFIVKQLEVEMGQSMEMGTIHAGDFL 213



 Score = 94.7 bits (234), Expect(2) = 1e-47
 Identities = 49/79 (62%), Positives = 61/79 (77%)
 Frame = +1

Query: 283 HMLGILWRFRSRLGMNHQAIKVAQEAVQNSKELDIRRNPTSVAAAVIYMITQLSDDRKFL 462
           H    L RF S LGMN+QA+K AQEAVQ S+ELDIRR+P S+AAAVIYMITQLS+D+K L
Sbjct: 208 HAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPL 267

Query: 463 KDVATATAVAEHNFNSIHR 519
           KD++ AT VAE    + ++
Sbjct: 268 KDISLATGVAEGTIRNSYK 286


>ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
           gi|297734946|emb|CBI17180.3| unnamed protein product
           [Vitis vinifera]
          Length = 314

 Score =  119 bits (297), Expect(2) = 3e-47
 Identities = 59/88 (67%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
 Frame = +3

Query: 42  QDQANEIYKKVVDHKSTRGRNRDAFLAACLFVACQQEHKPHTVKEIHSIANGATKKEIGR 221
           +D ANEIYKKV D K  RGRN+DA LAAC+++AC+QE KP TVKEI S+ANGATKKEIGR
Sbjct: 128 KDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGATKKEIGR 187

Query: 222 NKFFIEKQLK-EIGESMETGATYAGDFM 302
            K +I KQL+ E+G+SME G  +AGDF+
Sbjct: 188 AKEYIVKQLEVEMGQSMEMGTIHAGDFL 215



 Score = 96.3 bits (238), Expect(2) = 3e-47
 Identities = 50/79 (63%), Positives = 60/79 (75%)
 Frame = +1

Query: 283 HMLGILWRFRSRLGMNHQAIKVAQEAVQNSKELDIRRNPTSVAAAVIYMITQLSDDRKFL 462
           H    L RF S LGM +QA+K AQEAVQ S+ELDIRR+P SVAAAVIYMITQLSDD+K L
Sbjct: 210 HAGDFLRRFCSHLGMTNQAVKAAQEAVQKSEELDIRRSPISVAAAVIYMITQLSDDKKLL 269

Query: 463 KDVATATAVAEHNFNSIHR 519
           KD++ AT VAE    + ++
Sbjct: 270 KDISLATGVAEGTIRNSYK 288


>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
           gi|223547429|gb|EEF48924.1| transcription initiation
           factor iib, putative [Ricinus communis]
          Length = 312

 Score =  120 bits (302), Expect(2) = 3e-47
 Identities = 60/88 (68%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
 Frame = +3

Query: 42  QDQANEIYKKVVDHKSTRGRNRDAFLAACLFVACQQEHKPHTVKEIHSIANGATKKEIGR 221
           +D+ANEIYKKV D K  RGRN+DA LAACL++AC+QE KP TVKEI S+ANGATKKEIGR
Sbjct: 126 KDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185

Query: 222 NKFFIEKQLK-EIGESMETGATYAGDFM 302
            K +I KQL+ E+G+SME G  +AGDF+
Sbjct: 186 AKEYIVKQLEVELGQSMEMGTIHAGDFL 213



 Score = 94.4 bits (233), Expect(2) = 3e-47
 Identities = 46/79 (58%), Positives = 62/79 (78%)
 Frame = +1

Query: 283 HMLGILWRFRSRLGMNHQAIKVAQEAVQNSKELDIRRNPTSVAAAVIYMITQLSDDRKFL 462
           H    L RF S LGMN+QA+K AQEAV+ S+ELDIRR+P S+AAA+IYMITQLS+++K L
Sbjct: 208 HAGDFLRRFCSHLGMNNQAVKAAQEAVKKSEELDIRRSPISIAAAIIYMITQLSEEKKLL 267

Query: 463 KDVATATAVAEHNFNSIHR 519
           KD++T+T VAE    + ++
Sbjct: 268 KDISTSTGVAEGTIRNSYK 286


>ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
           distachyon]
          Length = 312

 Score =  121 bits (304), Expect(2) = 7e-47
 Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
 Frame = +3

Query: 42  QDQANEIYKKVVDHKSTRGRNRDAFLAACLFVACQQEHKPHTVKEIHSIANGATKKEIGR 221
           +D+ANEIYKKV D KS RGRN+DA LAACL++AC+QE +P TVKEI S+ANGATKKEIGR
Sbjct: 126 KDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGR 185

Query: 222 NKFFIEKQLK-EIGESMETGATYAGDFM 302
            K FI KQL+ E+G+SME G  +AGDF+
Sbjct: 186 AKEFIVKQLEVEMGQSMEMGTIHAGDFL 213



 Score = 92.4 bits (228), Expect(2) = 7e-47
 Identities = 48/79 (60%), Positives = 60/79 (75%)
 Frame = +1

Query: 283 HMLGILWRFRSRLGMNHQAIKVAQEAVQNSKELDIRRNPTSVAAAVIYMITQLSDDRKFL 462
           H    L RF S LGMN+ A+K AQEAVQ S+ELDIRR+P S+AAAVIYMITQLS+D+K L
Sbjct: 208 HAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSEDKKPL 267

Query: 463 KDVATATAVAEHNFNSIHR 519
           KD++ AT VAE    + ++
Sbjct: 268 KDISLATGVAEGTIRNSYK 286