BLASTX nr result
ID: Coptis21_contig00001411
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00001411
(1014 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27769.3| unnamed protein product [Vitis vinifera] 157 5e-36
ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 157 5e-36
ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|2... 138 2e-30
ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putativ... 137 5e-30
ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 135 2e-29
>emb|CBI27769.3| unnamed protein product [Vitis vinifera]
Length = 584
Score = 157 bits (396), Expect = 5e-36
Identities = 109/275 (39%), Positives = 138/275 (50%), Gaps = 16/275 (5%)
Frame = +1
Query: 187 KHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLMQRYVKGTSFHRKR*SVKL*HDDVIR 366
+H S+ DVD+ SE + K+ + S DY LP QL+QRYVK R + + R
Sbjct: 254 EHFGSVEFDVDEDSEKLHKIISPSNGDYKLPAQLVQRYVKVPCGSRLVVLLSILKHLFER 313
Query: 367 SYNIFISILWLTPCNSSIHSEKFK*KGSRLPKGCGVLFNMCRFLSKIELH---------- 516
+ I + + T H F FL LH
Sbjct: 314 EASQKIVVFFSTCDAVDFHYSLFS-----------------AFLWPANLHPETEDRQMFL 356
Query: 517 QTKAFRLHGNMEHEGRRTAFQGLK-QRNQLYCCAQMLLQGA*ISKCYVYYPV*LPRGG** 693
+ K F+LHGNM+HE RRT FQ K +++ L + +G K
Sbjct: 357 RFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARGLDFPK--------------- 401
Query: 694 ICA*IFAGVLYLIMRRDSWG-----IVRVGRTARLGEKGDVLFFLQPVEVDYLQDLQKHG 858
+ I++ DS G + RVGRTARLGE+GD L FLQPVE+DYLQDL+KHG
Sbjct: 402 ---------VRCIIQYDSPGEASEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG 452
Query: 859 VSWTEYPLLKVLDSFPLSNQRHHIKKFISIERHPW 963
VS TEY LLKVLDSFPLS Q+HHIKKFIS+E HPW
Sbjct: 453 VSLTEYSLLKVLDSFPLSGQKHHIKKFISLEMHPW 487
Score = 97.4 bits (241), Expect = 5e-18
Identities = 94/264 (35%), Positives = 127/264 (48%), Gaps = 38/264 (14%)
Frame = +2
Query: 29 RILELGYGK*IEEILGFLGSRKDGGVSKENAFSQDSKPQKQNLLLLAT*NDKVNILSRSD 208
RILELG+GK IEEIL L + Q+QNLLL AT N+KVN L++
Sbjct: 192 RILELGFGKEIEEILDLL------------------EFQRQNLLLSATLNEKVNHLAQIS 233
Query: 209 LTWMMGQNL*ASFQTFQRQIITYQLN*CRDM*KVPL------------FTENVNRL---S 343
L +T L+ + K PL +E ++++ S
Sbjct: 234 L----------------ENPVTIGLDGKKMQPKPPLEHFGSVEFDVDEDSEKLHKIISPS 277
Query: 344 YSMTMLFALII--FLSVSCGSRLVILLSILRNLNEREAASQKVVVFFSTC--VDFYQK-- 505
L A ++ ++ V CGSRLV+LLSIL++L ERE ASQK+VVFFSTC VDF+
Sbjct: 278 NGDYKLPAQLVQRYVKVPCGSRLVVLLSILKHLFERE-ASQKIVVFFSTCDAVDFHYSLF 336
Query: 506 ----------*NCTKRRLLGYMETWNTRAGGLH------FRV*NREISYTVVHR-CCFKG 634
R++ +T+ H F+ +E S ++ +G
Sbjct: 337 SAFLWPANLHPETEDRQMFLRFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARG 396
Query: 635 LRFPNVTCIIQYDSPGEASKYVHR 706
L FP V CIIQYDSPGEAS+YVHR
Sbjct: 397 LDFPKVRCIIQYDSPGEASEYVHR 420
>ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis
vinifera]
Length = 600
Score = 157 bits (396), Expect = 5e-36
Identities = 109/275 (39%), Positives = 138/275 (50%), Gaps = 16/275 (5%)
Frame = +1
Query: 187 KHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLMQRYVKGTSFHRKR*SVKL*HDDVIR 366
+H S+ DVD+ SE + K+ + S DY LP QL+QRYVK R + + R
Sbjct: 270 EHFGSVEFDVDEDSEKLHKIISPSNGDYKLPAQLVQRYVKVPCGSRLVVLLSILKHLFER 329
Query: 367 SYNIFISILWLTPCNSSIHSEKFK*KGSRLPKGCGVLFNMCRFLSKIELH---------- 516
+ I + + T H F FL LH
Sbjct: 330 EASQKIVVFFSTCDAVDFHYSLFS-----------------AFLWPANLHPETEDRQMFL 372
Query: 517 QTKAFRLHGNMEHEGRRTAFQGLK-QRNQLYCCAQMLLQGA*ISKCYVYYPV*LPRGG** 693
+ K F+LHGNM+HE RRT FQ K +++ L + +G K
Sbjct: 373 RFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARGLDFPK--------------- 417
Query: 694 ICA*IFAGVLYLIMRRDSWG-----IVRVGRTARLGEKGDVLFFLQPVEVDYLQDLQKHG 858
+ I++ DS G + RVGRTARLGE+GD L FLQPVE+DYLQDL+KHG
Sbjct: 418 ---------VRCIIQYDSPGEASEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHG 468
Query: 859 VSWTEYPLLKVLDSFPLSNQRHHIKKFISIERHPW 963
VS TEY LLKVLDSFPLS Q+HHIKKFIS+E HPW
Sbjct: 469 VSLTEYSLLKVLDSFPLSGQKHHIKKFISLEMHPW 503
Score = 116 bits (290), Expect = 1e-23
Identities = 101/264 (38%), Positives = 138/264 (52%), Gaps = 38/264 (14%)
Frame = +2
Query: 29 RILELGYGK*IEEILGFLGSRKDGGVSKENAFSQDSKPQKQNLLLLAT*NDKVNILSRSD 208
RILELG+GK IEEIL LGSR +G +E+A + S+ Q+QNLLL AT N+KVN L++
Sbjct: 192 RILELGFGKEIEEILDLLGSRTNGPTIREDAVT--SEFQRQNLLLSATLNEKVNHLAQIS 249
Query: 209 LTWMMGQNL*ASFQTFQRQIITYQLN*CRDM*KVPL------------FTENVNRL---S 343
L +T L+ + K PL +E ++++ S
Sbjct: 250 L----------------ENPVTIGLDGKKMQPKPPLEHFGSVEFDVDEDSEKLHKIISPS 293
Query: 344 YSMTMLFALII--FLSVSCGSRLVILLSILRNLNEREAASQKVVVFFSTC--VDFYQK-- 505
L A ++ ++ V CGSRLV+LLSIL++L ERE ASQK+VVFFSTC VDF+
Sbjct: 294 NGDYKLPAQLVQRYVKVPCGSRLVVLLSILKHLFERE-ASQKIVVFFSTCDAVDFHYSLF 352
Query: 506 ----------*NCTKRRLLGYMETWNTRAGGLH------FRV*NREISYTVVHR-CCFKG 634
R++ +T+ H F+ +E S ++ +G
Sbjct: 353 SAFLWPANLHPETEDRQMFLRFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARG 412
Query: 635 LRFPNVTCIIQYDSPGEASKYVHR 706
L FP V CIIQYDSPGEAS+YVHR
Sbjct: 413 LDFPKVRCIIQYDSPGEASEYVHR 436
>ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|222862365|gb|EEE99871.1|
predicted protein [Populus trichocarpa]
Length = 594
Score = 138 bits (348), Expect = 2e-30
Identities = 101/268 (37%), Positives = 133/268 (49%), Gaps = 8/268 (2%)
Frame = +1
Query: 190 HLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLMQRYVKGTSFHRKR*SVKL*HDDVIRS 369
H+++ SD DDG + K+ N S DY LP QL+QRYVK R + + + R
Sbjct: 264 HIETAESDEDDGLGY-SKVKNSSTGDYKLPAQLVQRYVKVPCGSRLAVLLSILKNLFERE 322
Query: 370 YNIFISILWLTPCNSSIHSEKFK*KGSRLPKGCGVLFNMCRFLSKIELHQTKAFRLHGNM 549
+ I + + T C++ + P + RFL + RLHGNM
Sbjct: 323 ASHKIVVFFST-CDAVDFHYSLLSEFCWSPNSQSEAEHTERFL------RCNTLRLHGNM 375
Query: 550 EHEGRRTAFQGLK-QRNQLYCCAQMLLQGA*ISK--CYVYYPV*LPRGG**ICA*IFAGV 720
+ E RR FQ K +++ L + +G K C V Y
Sbjct: 376 KQEDRRNTFQAFKTEKSALLLSTDIAARGLDFPKVRCIVQY------------------- 416
Query: 721 LYLIMRRDSWG-----IVRVGRTARLGEKGDVLFFLQPVEVDYLQDLQKHGVSWTEYPLL 885
DS G + RVGRTARLGEKGD L FLQPVEVDYL DL+KHGVS TEYP+L
Sbjct: 417 -------DSPGEATEYVHRVGRTARLGEKGDSLLFLQPVEVDYLHDLEKHGVSLTEYPIL 469
Query: 886 KVLDSFPLSNQRHHIKKFISIERHPWVV 969
KVL SFPL Q + +KF+S++ HPWV+
Sbjct: 470 KVLGSFPLYGQVYRARKFVSLDLHPWVL 497
Score = 119 bits (298), Expect = 1e-24
Identities = 123/355 (34%), Positives = 162/355 (45%), Gaps = 28/355 (7%)
Frame = +2
Query: 29 RILELGYGK*IEEILGFLGSRKDGGVSKENAFSQDSKPQKQNLLLLAT*NDKVNILSRSD 208
RILELG+GK IEEIL LGSR+ G V N S S Q QNLLL AT N+KVN L++
Sbjct: 183 RILELGFGKEIEEILDLLGSRQIGSVGNGNQVSSLSNFQGQNLLLSATLNEKVNHLAKIS 242
Query: 209 L--TWMMGQNL*ASFQTFQRQIITYQLN*CRDM*KVPLFTENVNRLSYSMTMLFALII-- 376
L M+G + Q + L V S L A ++
Sbjct: 243 LENPVMIG----LDDKKIQPDQSVDHIETAESDEDDGLGYSKVKNSSTGDYKLPAQLVQR 298
Query: 377 FLSVSCGSRLVILLSILRNLNEREAASQKVVVFFSTC--VDFYQK--------------- 505
++ V CGSRL +LLSIL+NL ERE AS K+VVFFSTC VDF+
Sbjct: 299 YVKVPCGSRLAVLLSILKNLFERE-ASHKIVVFFSTCDAVDFHYSLLSEFCWSPNSQSEA 357
Query: 506 ------*NCTKRRLLGYMETWNTRAGGLHFRV*NREISYTVVHRCCFKGLRFPNVTCIIQ 667
C RL G M+ + R F+ + + + +GL FP V CI+Q
Sbjct: 358 EHTERFLRCNTLRLHGNMKQEDRRNTFQAFK--TEKSALLLSTDIAARGLDFPKVRCIVQ 415
Query: 668 YDSPGEASKYVHRFLQVFYT*SCGETVGALFE*EELPA*GKRETFCFSYNQLKWIICKTC 847
YDSPGEA++YVHR V T GE +L + + + + ++ I K
Sbjct: 416 YDSPGEATEYVHR---VGRTARLGEKGDSLLFLQPVEVDYLHDLEKHGVSLTEYPILKVL 472
Query: 848 RSMVYHGQSIPYSRS*TVFLCPIRGIISRSLFR*RGIHGW-LPLQKSLESFMSSE 1009
S +GQ + R +S L H W L LQ++LESF+ SE
Sbjct: 473 GSFPLYGQ-----------VYRARKFVSLDL------HPWVLYLQRALESFILSE 510
>ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533687|gb|EEF35422.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 603
Score = 137 bits (344), Expect = 5e-30
Identities = 99/272 (36%), Positives = 132/272 (48%), Gaps = 10/272 (3%)
Frame = +1
Query: 187 KHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLMQRYVKGTSFHRKR*SVK----L*HD 354
+H KS+ SD DD E K+ S D+ +P QL+Q+YVK R + L
Sbjct: 273 EHTKSLKSDADDELEHPSKVLKPSTGDFKVPVQLVQKYVKVPCGSRLATLLSILKHLFEK 332
Query: 355 DVIRSYNIFISILWLTPCNSSIHSEKFK*KGSRLPKGCGVLFNMCRFLSKIELHQTKAFR 534
+ +F S + S+ SE S+ +F C K FR
Sbjct: 333 RASQKIVVFFSTCDAVDFHYSLLSEFRFSCTSQSEAEAAEMFLRC-----------KTFR 381
Query: 535 LHGNMEHEGRRTAFQGLKQ-RNQLYCCAQMLLQGA*ISKCYVYYPV*LPRGG**ICA*IF 711
LHGNM+ E RR FQ K + L + +G + K
Sbjct: 382 LHGNMKQEDRRDTFQAFKSDKLALLLSTDVAARGLDLPK--------------------- 420
Query: 712 AGVLYLIMRRDSWG-----IVRVGRTARLGEKGDVLFFLQPVEVDYLQDLQKHGVSWTEY 876
+ I++ D+ G + RVGRTAR+GEKGD L FLQPVEVDYLQ+LQKHGVS TEY
Sbjct: 421 ---VTWIIQYDTPGEATEYVHRVGRTARMGEKGDSLLFLQPVEVDYLQELQKHGVSLTEY 477
Query: 877 PLLKVLDSFPLSNQRHHIKKFISIERHPWVVT 972
P+LK+LDSF Q H KKF+S+E HPW+++
Sbjct: 478 PILKMLDSFSFYEQMHRNKKFVSLESHPWLLS 509
Score = 106 bits (264), Expect = 1e-20
Identities = 95/256 (37%), Positives = 133/256 (51%), Gaps = 30/256 (11%)
Frame = +2
Query: 29 RILELGYGK*IEEILGFLGSRKDGGVSKENAFSQDSKPQKQNLLLLAT*NDKVNILSRSD 208
RILELG+GK IE+IL LGSR V K N S S Q+QNLLL AT N+KVN L+
Sbjct: 193 RILELGFGKEIEDILDLLGSRLTRSVGKGNRDSSISNYQRQNLLLSATLNEKVNHLANIS 252
Query: 209 L--TWMMGQNL*ASFQTFQRQIITYQLN*CRDM*KVPLFTENVNRLSYSMTMLFALII-- 376
L M+G + Q + + + L E+ +++ T F + +
Sbjct: 253 LENPVMIG----LDDEKMQPEPLLEHTKSLKSDADDEL--EHPSKVLKPSTGDFKVPVQL 306
Query: 377 ---FLSVSCGSRLVILLSILRNLNEREAASQKVVVFFSTC--VDFYQ------K*NCTKR 523
++ V CGSRL LLSIL++L E+ ASQK+VVFFSTC VDF+ + +CT +
Sbjct: 307 VQKYVKVPCGSRLATLLSILKHLFEKR-ASQKIVVFFSTCDAVDFHYSLLSEFRFSCTSQ 365
Query: 524 ---------------RLLGYMETWNTRAGGLHFRV*NREISYTVVHRCCFKGLRFPNVTC 658
RL G M+ + R F+ + +++ + +GL P VT
Sbjct: 366 SEAEAAEMFLRCKTFRLHGNMKQEDRRDTFQAFK--SDKLALLLSTDVAARGLDLPKVTW 423
Query: 659 IIQYDSPGEASKYVHR 706
IIQYD+PGEA++YVHR
Sbjct: 424 IIQYDTPGEATEYVHR 439
>ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
17-like [Glycine max]
Length = 596
Score = 135 bits (340), Expect = 2e-29
Identities = 101/272 (37%), Positives = 141/272 (51%), Gaps = 11/272 (4%)
Frame = +1
Query: 187 KHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLMQRYVKGTSFHRKR*SVKL*HDDVIR 366
K L S SD D ++ K+P DY +P QL+QRY+K R + + R
Sbjct: 267 KRLDSSESDEDSEDKYSSKVPTVG--DYKVPIQLIQRYMKVPCGSRLPVLLSILKHLFER 324
Query: 367 SYNIFISILWLTPCNS-----SIHSEKFK*KGSRLPKGCGVLFNMCRFLSKIELHQTKAF 531
+ + +L+ + C++ S+ SE F+ +G +F C K F
Sbjct: 325 EPSQKV-VLFFSTCDAVDFHYSLLSE-FQFSSYPQTEGVRQVFLGC-----------KTF 371
Query: 532 RLHGNMEHEGRRTAFQGLK-QRNQLYCCAQMLLQGA*ISKCYVYYPV*LPRGG**ICA*I 708
RLHGNM+ E RRT+FQ K +++ L + +G K
Sbjct: 372 RLHGNMQQEDRRTSFQAFKTEKSALLLSTDVSARGLDFPK-------------------- 411
Query: 709 FAGVLYLIMRRDSWG-----IVRVGRTARLGEKGDVLFFLQPVEVDYLQDLQKHGVSWTE 873
+ I++ DS G + RVGRTARLGE+G+ L FLQPVE+DYLQDL+KHGVS TE
Sbjct: 412 ----VRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTE 467
Query: 874 YPLLKVLDSFPLSNQRHHIKKFISIERHPWVV 969
YP+LKVLDSFPL Q++H KK + +E HPWV+
Sbjct: 468 YPVLKVLDSFPL--QKNHTKKSVFLESHPWVL 497
Score = 122 bits (306), Expect = 1e-25
Identities = 97/253 (38%), Positives = 129/253 (50%), Gaps = 27/253 (10%)
Frame = +2
Query: 29 RILELGYGK*IEEILGFLGSRKDGGVSKENAFSQDSKPQKQNLLLLAT*NDKVNILSRSD 208
RILELG+GK IEEIL LGSRK G +EN SK Q+QNLLL AT N+KVN L++
Sbjct: 187 RILELGFGKDIEEILDLLGSRKKGHGDQENTVLTHSKIQRQNLLLSATLNEKVNHLAKMS 246
Query: 209 L-----TWMMGQNL*ASFQTFQRQIITYQLN*CRDM*KVPLFTENVNRLSYSMTMLFALI 373
L + G+ + T +R + D ++ V + + +
Sbjct: 247 LDNPVMIGLDGKKM-EPISTIKRLDSSESDEDSEDK-----YSSKVPTVGDYKVPIQLIQ 300
Query: 374 IFLSVSCGSRLVILLSILRNLNEREAASQKVVVFFSTC--VDFYQK-------------- 505
++ V CGSRL +LLSIL++L ERE SQKVV+FFSTC VDF+
Sbjct: 301 RYMKVPCGSRLPVLLSILKHLFERE-PSQKVVLFFSTCDAVDFHYSLLSEFQFSSYPQTE 359
Query: 506 ------*NCTKRRLLGYMETWNTRAGGLHFRV*NREISYTVVHRCCFKGLRFPNVTCIIQ 667
C RL G M+ + R F+ + + + +GL FP V CIIQ
Sbjct: 360 GVRQVFLGCKTFRLHGNMQQEDRRTSFQAFK--TEKSALLLSTDVSARGLDFPKVRCIIQ 417
Query: 668 YDSPGEASKYVHR 706
YDSPGEA++YVHR
Sbjct: 418 YDSPGEATEYVHR 430