BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001240
         (1858 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3...   551   e-154
ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis tha...   516   e-144
ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|2...   516   e-143
ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|A...   510   e-142
ref|XP_003564854.1| PREDICTED: DNA repair protein recA homolog 3...   506   e-141

>ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like
            [Vitis vinifera] gi|297738654|emb|CBI27899.3| unnamed
            protein product [Vitis vinifera]
          Length = 421

 Score =  551 bits (1419), Expect = e-154
 Identities = 292/423 (69%), Positives = 335/423 (79%), Gaps = 1/423 (0%)
 Frame = +2

Query: 188  MARLLRNHFSLKQSLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXXENLSKKDL 367
            MARLLRN  SL+ SL A +  R  +LGTS+Q  NF                 ENLSKK+L
Sbjct: 1    MARLLRNASSLRHSLFAVEGFRKGVLGTSSQFCNFSSKGRRRSKSDGSDSNEENLSKKEL 60

Query: 368  ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 547
            AL+QA+DQIT +FGKG+IMWLGR+ S ++VPVVSTGSF+LD+ LGIGGLPKGRVVEIYGP
Sbjct: 61   ALRQALDQITTSFGKGSIMWLGRSVSSKHVPVVSTGSFALDIVLGIGGLPKGRVVEIYGP 120

Query: 548  EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 727
            EASGKTTLALHVIAE+QK GGYCVFVDAEHALDP+LAEAIGV T+NLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLSQPDCGEQALS 180

Query: 728  LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 907
            LVDTLIRSG            LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181  LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240

Query: 908  ILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNIKRIGLVKKGEETVGSQVQV 1084
            ILIF NQ+R+KLSTFG F GP EVT GGNALKFYASVRLNIKRIGLVKKGEET+GSQV V
Sbjct: 241  ILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQVLV 300

Query: 1085 KIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNFCGRDA 1264
            K+VKNKHAPPF+TAQFELEFGKGI RESEIVELG KHKFI+KGGGA Y +N Q+F G+DA
Sbjct: 301  KVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSYNGQSFRGKDA 360

Query: 1265 LKRYLAENDNXXXXXXXXXXXXXIHPGSDKVKEPETDVPEEDPKLEIVSPDTVEDDLVSA 1444
            +K++L++N++             +   ++K KE E +  +ED     V PDT +++ V+A
Sbjct: 361  IKQFLSQNESEREELMRKLREKLVGE-TNKEKELEAEAVDEDIAEGTVPPDTTDEE-VTA 418

Query: 1445 LEA 1453
            +EA
Sbjct: 419  VEA 421


>ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis thaliana]
            gi|209572665|sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA
            repair protein recA homolog 3, mitochondrial; AltName:
            Full=Recombinase A homolog 3; Flags: Precursor
            gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis
            thaliana] gi|330251794|gb|AEC06888.1| DNA repair protein
            recA-like 3 [Arabidopsis thaliana]
          Length = 430

 Score =  516 bits (1329), Expect = e-144
 Identities = 273/416 (65%), Positives = 322/416 (77%), Gaps = 1/416 (0%)
 Frame = +2

Query: 188  MARLLRNHFSLKQSLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXXENLSKKDL 367
            MAR+LRN +SL+ SL ++++ R +++GTS Q+  F                 E +SKK++
Sbjct: 1    MARILRNVYSLRSSLFSSELLRRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEI 60

Query: 368  ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 547
            AL+QA+DQIT++FGKG+IM+LGR  SPRNVPV STGSF+LD+ALG+GGLPKGRVVEIYGP
Sbjct: 61   ALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGP 120

Query: 548  EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 727
            EASGKTTLALHVIAE+QK GG CVFVDAEHALD SLA+AIGV TENLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180

Query: 728  LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 907
            LVDTLIRSG            LVPKGEL+GEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181  LVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240

Query: 908  ILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNIKRIGLVKKGEETVGSQVQV 1084
            +LIF NQ+RSKLSTFG F GP EVT GGNALKFYAS+RLNIKRIGL+KKGEET GSQV V
Sbjct: 241  LLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSV 300

Query: 1085 KIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNFCGRDA 1264
            KIVKNK APPFRTAQFELEFGKGI + +EI++L IKHKFI K  G +Y  N +N+ G++A
Sbjct: 301  KIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAK-NGTFYNLNGKNYHGKEA 359

Query: 1265 LKRYLAENDNXXXXXXXXXXXXXIHPGSDKVKEPETDVPEEDPKLEIVSPDTVEDD 1432
            LKR+L +N++             I   +   KE E++  EED    +VSPD  +D+
Sbjct: 360  LKRFLKQNESDQEELMKKLQDKLIADEAAD-KETESESEEEDSLRVVVSPDNTDDE 414


>ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1|
            predicted protein [Populus trichocarpa]
          Length = 418

 Score =  516 bits (1328), Expect = e-143
 Identities = 270/419 (64%), Positives = 320/419 (76%)
 Frame = +2

Query: 188  MARLLRNHFSLKQSLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXXENLSKKDL 367
            MARLLRN  SL+++L+A +  R  +LGTSTQI NF                 EN+SKK+L
Sbjct: 1    MARLLRNASSLRRALVAPEGIRRGVLGTSTQICNFATKGKRKSKSDGSESGEENMSKKEL 60

Query: 368  ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 547
            AL+QA+DQIT+ FGKGAIMW GR+ +P+NVPVVSTGSF+LD+ALG GG PKGRVVEI+GP
Sbjct: 61   ALQQALDQITSQFGKGAIMWFGRSEAPKNVPVVSTGSFALDIALGCGGFPKGRVVEIFGP 120

Query: 548  EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 727
            EASGKTTLALHVIAE+QK GGYCVFVDAEHALD SLA+AIGV TENLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180

Query: 728  LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 907
            LVDTLIRSG            LVPK ELDGEMGDAHMAMQARLMSQALRKLSHSLS SQT
Sbjct: 181  LVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLSQSQT 240

Query: 908  ILIFTNQIRSKLSTFGAFGPQEVTSGGNALKFYASVRLNIKRIGLVKKGEETVGSQVQVK 1087
            IL+F NQ+R+KLSTFG  GP EVT GGNALKFYASVRLNI+R+G +KKGEET G+QVQVK
Sbjct: 241  ILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQVQVK 300

Query: 1088 IVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNFCGRDAL 1267
            IVKNK APPF+T QFELEFGKGISRESEI+EL +KHK I K  G++Y  N + + G++A 
Sbjct: 301  IVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKK-SGSFYDCNGKKYHGKEAF 359

Query: 1268 KRYLAENDNXXXXXXXXXXXXXIHPGSDKVKEPETDVPEEDPKLEIVSPDTVEDDLVSA 1444
            K +LA ND+             +    +  +E   +  + +P  EI+SPD+ ++++ +A
Sbjct: 360  KEFLAHNDDVQEELMMKLREKLLE--GETGQELGDESTDGEPTQEIISPDSTDEEVAAA 416


>ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|AES65456.1| RecA [Medicago
            truncatula]
          Length = 424

 Score =  510 bits (1314), Expect = e-142
 Identities = 278/434 (64%), Positives = 323/434 (74%), Gaps = 12/434 (2%)
 Frame = +2

Query: 188  MARLLRNHFSLKQSL----LATQVC-RHAILGTSTQISNFXXXXXXXXXXXXXXXXXENL 352
            MARLLR+ F L +S     L T+ C ++ +LGTS  +S                   EN+
Sbjct: 1    MARLLRSTFFLNRSFFHHHLPTRFCSKNGVLGTSQVLSFSTNKGKKRSKSDGSDSGEENM 60

Query: 353  SKKDLALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVV 532
            SKKDLAL+QAMDQIT+TFGKG+IMWLGRT SP+NVPVVSTGSF+LD+ALGI GLPKGRVV
Sbjct: 61   SKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVV 120

Query: 533  EIYGPEASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSG 712
            EI+GPEASGKTTLALHVIAE+QK GGYC F+DAEHALD SLAE+IGV TENLLLSQPD G
Sbjct: 121  EIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCG 180

Query: 713  EQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 892
            EQALSLVDTLIRSG            LVPKGELDGEMGDAHMAMQARLMSQALRKL HSL
Sbjct: 181  EQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSL 240

Query: 893  SLSQTILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNIKRIGLVKKGEETVG 1069
            SLSQ ILIF NQ+RSK+STFG F GP EVT GGNALKFY+SVRLNIKR+G VKKGEETVG
Sbjct: 241  SLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETVG 300

Query: 1070 SQVQVKIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNF 1249
            SQV VK+VKNKHAPPF+TAQFELEFGKGI RE+EI+EL IKHKFI K  G++Y++N +N+
Sbjct: 301  SQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKK-SGSFYEYNGKNY 359

Query: 1250 CGRDALKRYLAENDNXXXXXXXXXXXXXIHPGSDKVKEPETDVPEEDPKL------EIVS 1411
             G+DALK +L   D                   +K+   ET+   E  ++      E++S
Sbjct: 360  HGKDALKSHLINGDGLQDLTTKL---------REKLLNAETETVSESQEMVGDVTEEMLS 410

Query: 1412 PDTVEDDLVSALEA 1453
            PD+ +++     EA
Sbjct: 411  PDSTDEETAVVAEA 424


>ref|XP_003564854.1| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like
            [Brachypodium distachyon]
          Length = 429

 Score =  506 bits (1304), Expect = e-141
 Identities = 278/431 (64%), Positives = 324/431 (75%), Gaps = 9/431 (2%)
 Frame = +2

Query: 188  MARLLRNHFSLKQSL--LATQVC----RHAILGTSTQISNFXXXXXXXXXXXXXXXXXEN 349
            MA LLR   S+++++  +A+  C    R  I G++    +F                 EN
Sbjct: 1    MATLLRRA-SVRRAIAAVASSPCPESYRQVICGSTFHCRDFASKAKKKTKSSGTDSGEEN 59

Query: 350  LSKKDLALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRV 529
            +SKKDLAL QA+DQIT++FGKGAIMWLGR+   R VPVVSTGSFSLDLALGIGGLPKGRV
Sbjct: 60   MSKKDLALHQAIDQITSSFGKGAIMWLGRSEGHREVPVVSTGSFSLDLALGIGGLPKGRV 119

Query: 530  VEIYGPEASGKTTLALHVIAESQKHGG--YCVFVDAEHALDPSLAEAIGVKTENLLLSQP 703
            VE+YGPEASGKTTLALHVIAE+QKHGG  YC F+DAEHALDPSLAE+IGV T NLLLSQP
Sbjct: 120  VEVYGPEASGKTTLALHVIAEAQKHGGGGYCAFIDAEHALDPSLAESIGVDTSNLLLSQP 179

Query: 704  DSGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLS 883
            DS EQALSLVDTLIRSG            LVPK ELDGEMGDAH+A+QARLMSQALRKLS
Sbjct: 180  DSAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRKLS 239

Query: 884  HSLSLSQTILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNIKRIGLVKKGEE 1060
            HSLSLSQTIL+F NQIR+K+STFG F GP EVTSGGNALKFYASVRLNI+R+GLVKKGEE
Sbjct: 240  HSLSLSQTILLFINQIRAKVSTFGGFGGPTEVTSGGNALKFYASVRLNIRRVGLVKKGEE 299

Query: 1061 TVGSQVQVKIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFND 1240
            T+GSQV VKIVKNKHAPPFRTAQFELEFGKGISR SE+VELG+KHK + K GGAYY FN+
Sbjct: 300  TIGSQVNVKIVKNKHAPPFRTAQFELEFGKGISRSSELVELGLKHKLVKKTGGAYYSFNE 359

Query: 1241 QNFCGRDALKRYLAENDNXXXXXXXXXXXXXIHPGSDKVKEPETDVPEEDPKLEIVSPDT 1420
            + F G+DALK +L  N++             I   +   +E E D+  + P+  + S  +
Sbjct: 360  KAFHGKDALKSFLTGNES-IAKELEMELRRLIETEAPIKQEAEDDLLSDLPEETVRSDTS 418

Query: 1421 VEDDLVSALEA 1453
             E+DL + +EA
Sbjct: 419  SEEDLAAVIEA 429