BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001200
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...   125   4e-27
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...   124   1e-26
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   123   1e-26
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   123   2e-26
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   122   4e-26

>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 977

 Score =  125 bits (314), Expect = 4e-27
 Identities = 57/126 (45%), Positives = 86/126 (68%)
 Frame = +1

Query: 79  VTRDEIVEAVSRIDSDKALGGDGFGAHFFKTAWRVVGDDFVRAIKNFFVSGRLLSEVNST 258
           VT++EI   V  +  DK+LG DG+   F+K  W ++G++FV AIK+FF  G L   VNST
Sbjct: 568 VTKEEIKRVVFSMPKDKSLGPDGYRTEFYKATWDIIGEEFVLAIKSFFEKGFLPKGVNST 627

Query: 259 CVTLVPKNLSPASLSDYRPIAFCSVVYKCITKIMATRMKHIMPLIVSPNQSAFITGRSIQ 438
            + L+PK L    + DYRPI+ C+V+YK I+KI+A R+K ++P  ++ NQSAF+  R + 
Sbjct: 628 ILALIPKKLEEIEMKDYRPISCCNVIYKVISKIIANRLKRLLPNFIAGNQSAFVQDRLLL 687

Query: 439 DNILLS 456
           +N+LL+
Sbjct: 688 ENLLLT 693


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score =  124 bits (310), Expect = 1e-26
 Identities = 62/139 (44%), Positives = 90/139 (64%)
 Frame = +1

Query: 40  QIDTTMKEGLEKMVTRDEIVEAVSRIDSDKALGGDGFGAHFFKTAWRVVGDDFVRAIKNF 219
           QID   +E L K VTR+E+   V ++ S KA G DG  A F++  W +VG+D  RA+ +F
Sbjct: 428 QIDLMQREDLIKPVTREEVRNVVFQMGSLKAPGPDGIPAIFYQKHWSIVGEDIWRAVSHF 487

Query: 220 FVSGRLLSEVNSTCVTLVPKNLSPASLSDYRPIAFCSVVYKCITKIMATRMKHIMPLIVS 399
           F +G +L E N T + L+PK   P     +RPI+ C+V+YK I+KI+A R+K I+  IV+
Sbjct: 488 FTTGYILQEWNQTNICLIPKVERPEQACQFRPISLCNVIYKIISKIIANRLKPILKSIVT 547

Query: 400 PNQSAFITGRSIQDNILLS 456
           P Q+AF+ GR I DN L++
Sbjct: 548 PYQNAFVPGRLISDNCLIA 566


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  123 bits (309), Expect = 1e-26
 Identities = 57/141 (40%), Positives = 95/141 (67%)
 Frame = +1

Query: 34  RNQIDTTMKEGLEKMVTRDEIVEAVSRIDSDKALGGDGFGAHFFKTAWRVVGDDFVRAIK 213
           R + D   ++ LE  V+  +I      + S+K+ G DG+ + FFK  W +VG   + A++
Sbjct: 431 RFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQ 490

Query: 214 NFFVSGRLLSEVNSTCVTLVPKNLSPASLSDYRPIAFCSVVYKCITKIMATRMKHIMPLI 393
            FF SGRLL + NST VT+VPK  +   ++++RPI+ C+ +YK I+K++A R+++I+PL 
Sbjct: 491 EFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLW 550

Query: 394 VSPNQSAFITGRSIQDNILLS 456
           +SP+QSAF+ GR + +N+LL+
Sbjct: 551 ISPSQSAFVKGRLLTENVLLA 571


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score =  123 bits (308), Expect = 2e-26
 Identities = 55/133 (41%), Positives = 90/133 (67%)
 Frame = +1

Query: 58  KEGLEKMVTRDEIVEAVSRIDSDKALGGDGFGAHFFKTAWRVVGDDFVRAIKNFFVSGRL 237
           ++ L + VT +EI + + R+ SDK+ G DG+ + FFK  W ++GD+F  A+++FF  G L
Sbjct: 446 QQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFL 505

Query: 238 LSEVNSTCVTLVPKNLSPASLSDYRPIAFCSVVYKCITKIMATRMKHIMPLIVSPNQSAF 417
              +NST + L+PK      + DYRPI+ C+V+YK I+KI+A R+K ++P  ++ NQSAF
Sbjct: 506 PKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAF 565

Query: 418 ITGRSIQDNILLS 456
           +  R + +N+LL+
Sbjct: 566 VKDRLLIENLLLA 578


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score =  122 bits (305), Expect = 4e-26
 Identities = 57/133 (42%), Positives = 90/133 (67%)
 Frame = +1

Query: 58   KEGLEKMVTRDEIVEAVSRIDSDKALGGDGFGAHFFKTAWRVVGDDFVRAIKNFFVSGRL 237
            K+ L   V+  EI  A+  + +DK+ G DG+ + F+K AW ++G +FV A+K+FF  G L
Sbjct: 861  KDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFL 920

Query: 238  LSEVNSTCVTLVPKNLSPASLSDYRPIAFCSVVYKCITKIMATRMKHIMPLIVSPNQSAF 417
               VN+T + L+PK L    + DYRPI+ C+V+YK I+KI+A R+KH++P  ++ NQSAF
Sbjct: 921  PKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAF 980

Query: 418  ITGRSIQDNILLS 456
            +  R + +N+LL+
Sbjct: 981  VKDRLLIENLLLA 993