BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00001131
         (739 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262822.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...    96   8e-18
ref|XP_002519056.1| rnf5, putative [Ricinus communis] gi|2235417...    94   3e-17
gb|AEC04825.1| ubiquitin ligase protein [Vitis pseudoreticulata]       94   4e-17
ref|XP_003542751.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...    88   2e-15
ref|XP_003529322.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...    88   2e-15

>ref|XP_002262822.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1 isoform 1 [Vitis
           vinifera] gi|359497380|ref|XP_003635497.1| PREDICTED: E3
           ubiquitin-protein ligase RMA1H1 isoform 2 [Vitis
           vinifera] gi|359497382|ref|XP_003635498.1| PREDICTED: E3
           ubiquitin-protein ligase RMA1H1 isoform 3 [Vitis
           vinifera] gi|147810574|emb|CAN63097.1| hypothetical
           protein VITISV_013326 [Vitis vinifera]
          Length = 240

 Score = 95.9 bits (237), Expect = 8e-18
 Identities = 63/145 (43%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
 Frame = +3

Query: 75  LYGRGQS-SHDESKDQGSLRGLDIPSRPRACGVDALIXXXXXXXXXXXXXXRNPYRXXXX 251
           LYGRGQ+ S  E + +    G+ IP RP ACG  ALI              RNPY+    
Sbjct: 88  LYGRGQTPSETELEGKTHCFGMAIPPRPPACGTQALINATSHNGQQLQY--RNPYQNQQY 145

Query: 252 XXXXXXFQNRFGXXXXXXXXXXXXM-----IGMFGEMFYTRIFGNSPATSLYWYPNSYHH 416
                                         +GMFGEM Y R+FGNS   SLY YPNSYH 
Sbjct: 146 DPHPYNDYEHDSPSSLFNMGGSTATSFFHPVGMFGEMVYARVFGNSE--SLYAYPNSYHL 203

Query: 417 TGNTSPRARRQEMQAEKSLNRISSF 491
           TG+++PR RRQEMQA+KSLNRIS F
Sbjct: 204 TGSSTPRLRRQEMQADKSLNRISIF 228


>ref|XP_002519056.1| rnf5, putative [Ricinus communis] gi|223541719|gb|EEF43267.1| rnf5,
           putative [Ricinus communis]
          Length = 241

 Score = 94.0 bits (232), Expect = 3e-17
 Identities = 65/154 (42%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
 Frame = +3

Query: 51  IFYNTGNNLYGRGQSSHD-ESKDQGSLRGLDIPSRPRACGVDALIXXXXXXXXXXXXXXR 227
           I + T   LYGRGQ+  + E + + S RG  IP RP ACG  ALI               
Sbjct: 80  ISHTTMVPLYGRGQAPAEAEIEGKASCRGTAIPPRPSACGAQALISSPQHTAQQLPY--H 137

Query: 228 NPYRXXXXXXXXXX-FQNR-----FGXXXXXXXXXXXXMIGMFGEMFYTRIFGNSPATSL 389
           NPY+           F+                      +GMFGEM Y R+FGNS   SL
Sbjct: 138 NPYQNHNYTPDPYSSFEEASQSPLLNLGGSAVTGFHHPFVGMFGEMVYARVFGNSD--SL 195

Query: 390 YWYPNSYHHTGNTSPRARRQEMQAEKSLNRISSF 491
           Y Y NSYH  G+ SPR RRQEMQA+KSLNRIS F
Sbjct: 196 YAYRNSYHLMGSNSPRLRRQEMQADKSLNRISIF 229


>gb|AEC04825.1| ubiquitin ligase protein [Vitis pseudoreticulata]
          Length = 240

 Score = 93.6 bits (231), Expect = 4e-17
 Identities = 62/145 (42%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
 Frame = +3

Query: 75  LYGRGQS-SHDESKDQGSLRGLDIPSRPRACGVDALIXXXXXXXXXXXXXXRNPYRXXXX 251
           LYGRGQ+ S  E + +    G+ IP RP ACG  ALI              RNPY+    
Sbjct: 88  LYGRGQTPSETELEGKTHCFGMAIPPRPPACGTQALINATSHNGQQLQY--RNPYQNQQY 145

Query: 252 XXXXXXFQNRFGXXXXXXXXXXXXM-----IGMFGEMFYTRIFGNSPATSLYWYPNSYHH 416
                                         +GMFGEM Y R+FGNS   SLY YPNSYH 
Sbjct: 146 DPHPYNDYEHDSPSSLFNMGGSTATSFFHPVGMFGEMVYARVFGNSE--SLYAYPNSYHL 203

Query: 417 TGNTSPRARRQEMQAEKSLNRISSF 491
           TG+++PR R QEMQA+KSLNRIS F
Sbjct: 204 TGSSTPRLRTQEMQADKSLNRISIF 228


>ref|XP_003542751.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform 1
           [Glycine max] gi|356548729|ref|XP_003542752.1|
           PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like
           isoform 2 [Glycine max]
          Length = 237

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 64/154 (41%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
 Frame = +3

Query: 45  DFIFYNTGNNLYGRGQ--SSHDESKDQGSLRGLDIPSRPRACGVDALIXXXXXXXXXXXX 218
           D I + T   LYGRGQ  +  D      S RG  IP RP A G  +LI            
Sbjct: 79  DDICHTTMVPLYGRGQGIAHSDHDGKASSYRGSCIPPRPPALGAQSLIATSSQSVPY--- 135

Query: 219 XXRNPYRXXXXXXXXXXFQNRF--GXXXXXXXXXXXXMIGMFGEMFYTRIFGNSPATSLY 392
             RN Y+            ++                + GMFGEMFYTR+FGNS   +LY
Sbjct: 136 --RNTYQNQHLYQEEDASSSQMLNPGATILAPGFPHLVFGMFGEMFYTRVFGNSE--NLY 191

Query: 393 WYPNSYH-HTGNTSPRARRQEMQAEKSLNRISSF 491
            +PNSYH    N SPR RRQEMQA KSLNRIS F
Sbjct: 192 THPNSYHLGESNNSPRLRRQEMQANKSLNRISIF 225


>ref|XP_003529322.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max]
          Length = 248

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 64/159 (40%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
 Frame = +3

Query: 45  DFIFYNTGNNLYGRGQSSHDESKD--QGSLRGLDIPSRPRACGVDALIXXXXXXXXXXXX 218
           D I + T   LYGRGQ      +D    S RG  IP RP A G  +L+            
Sbjct: 82  DDICHTTMVPLYGRGQGIAHSDRDGKASSYRGSFIPPRPPALGAQSLMSTSSQSAQQLPY 141

Query: 219 XXRNPYRXXXXXXXXXXFQNRFGXXXXXXXXXXXX------MIGMFGEMFYTRIFGNSPA 380
             RNPY+           ++                     ++GMFGEM Y R+FGNS  
Sbjct: 142 --RNPYQNQHFNPPLYQDEDESSSQMLNPGANMVAPGFPHLVVGMFGEMLYARVFGNSE- 198

Query: 381 TSLYWYPNSYHHTG--NTSPRARRQEMQAEKSLNRISSF 491
            +LY YPNSYH  G  N SPR RRQEMQA KSLNRIS F
Sbjct: 199 -NLYNYPNSYHLGGSNNNSPRLRRQEMQANKSLNRISIF 236