BLASTX nr result
ID: Coptis21_contig00001077
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00001077
(1876 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 773 0.0
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 743 0.0
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho... 743 0.0
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 719 0.0
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 718 0.0
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 773 bits (1995), Expect = 0.0
Identities = 380/567 (67%), Positives = 450/567 (79%), Gaps = 2/567 (0%)
Frame = +3
Query: 3 VAQKCGWSQTPSAFQIRYGGYKGVVAVDRSSFKKLSLRPSMLKFKSENRMLNVTSHTESL 182
VAQKCG QTPSAFQIRYGGYKGV+AVDR+SF+KLSLR SMLKF+S+NRMLNVT +ES
Sbjct: 560 VAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWSEST 619
Query: 183 PCFLNREIVTLLSTLGIQDEKFEAMQREQVQFLDEMLTNGEAALDVLASTG--DTKSILV 356
PC+LNREIV+LLSTLG++DE FEA+ EQ+ LD+MLTN +AALDVL S G D K+IL
Sbjct: 620 PCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILA 679
Query: 357 DMLLQGYKPSKEPYLCMMLKSYRAYQLADIRSKCRVFVPKGRVLMGCLDETGTLSYGQVY 536
MLLQGY+P+ EPYL MML++YR QL+DIR++CR+FVPK RVL+GCLDETG L+YGQVY
Sbjct: 680 KMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVY 739
Query: 537 VRVTKTRAELQSGEQTFFRKXXXXXXXXXXXXXXXXXXXXNPCLHPGDIRVLQAVYEPAL 716
VRVT T+AE + Q+FF+K NPCLHPGDIRVL AVYE L
Sbjct: 740 VRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTK----NPCLHPGDIRVLDAVYEVEL 795
Query: 717 VEKGFVDCLVFPQKGDRPHPNECSGGDLDGDLFFVCWDEHLIPMHPDRPMDYIARRQRIL 896
EKG VDC++FPQKG+RPHPNECSGGDLDGD FF+CWDE LIP + PMDY +RR RI+
Sbjct: 796 EEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIM 855
Query: 897 DHEVTLEEIQEFFVNYMINDNLGVIATAHLVHADREPQKARSKKCLDLATLHSMAVDFAK 1076
DH+VTLEEIQ+FFV+YMIND LGVI+TAHLVHADREP+KARSKKCL+LATLHSMAVDFAK
Sbjct: 856 DHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAK 915
Query: 1077 NGAPAEMPGELKPKVYPDFMEREDRPMYVSPGVLGKLYRATITSTENQEPDFIWSEKVAE 1256
GAPAEMP LKPK +PDFMER D+PMY+S G LGKLYRATI S N++ F+WS +
Sbjct: 916 TGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIPG 975
Query: 1257 AAYDHDLEVNGFESLLEIAESCKMMYREKLSILMNYYGAGREEEILTGNLQNRSMYLDRD 1436
AAYDHDLEV+GFE+ LEIA+ K MY EK++ LMN+YGA E+E+LTGNL+N+ MYL RD
Sbjct: 976 AAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRD 1035
Query: 1437 KRKYREVKDRILTSIKSLQREARGWFNGSCEERDYTKMASAWYHVTYHPKYCKDSTNCLS 1616
R++ E+KDRIL S+KSLQ+EA+ W GSC+ + KMASAWYHVTYH + + N LS
Sbjct: 1036 NRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYHVTYHSTFSSQTPNFLS 1095
Query: 1617 FPWIVGENLLNIKSVKSRRV*TVNRYC 1697
FPWIVGE LL IKS SR+ T C
Sbjct: 1096 FPWIVGEVLLVIKSANSRKAETSKDNC 1122
>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 983
Score = 743 bits (1918), Expect = 0.0
Identities = 360/567 (63%), Positives = 441/567 (77%), Gaps = 2/567 (0%)
Frame = +3
Query: 3 VAQKCGWSQTPSAFQIRYGGYKGVVAVDRSSFKKLSLRPSMLKFKSENRMLNVTSHTESL 182
VAQKCG ++TPSAFQIRYGGYKGV+AVDR+SF+KLSLR SM KF+SENRMLNVT +ES+
Sbjct: 410 VAQKCGLNRTPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESM 469
Query: 183 PCFLNREIVTLLSTLGIQDEKFEAMQREQVQFLDEMLTNGEAALDVLASTG--DTKSILV 356
PC+LNREI+TLL+TLG++DE FE +Q++Q+Q L+ MLTN E+AL+VL + + K+IL+
Sbjct: 470 PCYLNREIITLLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILI 529
Query: 357 DMLLQGYKPSKEPYLCMMLKSYRAYQLADIRSKCRVFVPKGRVLMGCLDETGTLSYGQVY 536
ML+QGY+P+ EPYL MML++Y L ++RS+CR+FVPKGR+L+GCLDET L YGQVY
Sbjct: 530 KMLVQGYEPNVEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVY 589
Query: 537 VRVTKTRAELQSGEQTFFRKXXXXXXXXXXXXXXXXXXXXNPCLHPGDIRVLQAVYEPAL 716
VR+T T+AELQ +Q F + NPCLHPGDIRVL+AVYE L
Sbjct: 590 VRITMTKAELQDADQASFHRVDETTAVVTGKVIVTK----NPCLHPGDIRVLEAVYEVEL 645
Query: 717 VEKGFVDCLVFPQKGDRPHPNECSGGDLDGDLFFVCWDEHLIPMHPDRPMDYIARRQRIL 896
EKG VDC++FPQKG+RPHPNECSGGDLDGD FF+ WD+ LIP + PMDY RR R +
Sbjct: 646 EEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKM 705
Query: 897 DHEVTLEEIQEFFVNYMINDNLGVIATAHLVHADREPQKARSKKCLDLATLHSMAVDFAK 1076
DH+VTLEEIQ+FF++YMIND LG I+TAHLVHADREP KARS KCL LA LHSMAVDFAK
Sbjct: 706 DHDVTLEEIQKFFIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAK 765
Query: 1077 NGAPAEMPGELKPKVYPDFMEREDRPMYVSPGVLGKLYRATITSTENQEPDFIWSEKVAE 1256
GAPAEMP LKPK +PDFMER D+ MY+S GVLGKLYR T+ ST Q F+W+E +AE
Sbjct: 766 TGAPAEMPKALKPKEFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAE 825
Query: 1257 AAYDHDLEVNGFESLLEIAESCKMMYREKLSILMNYYGAGREEEILTGNLQNRSMYLDRD 1436
A YDHDLEV GFE +EIA S K MY EKLS LM+YY A +E+EILTGNLQN++MYL RD
Sbjct: 826 ATYDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRD 885
Query: 1437 KRKYREVKDRILTSIKSLQREARGWFNGSCEERDYTKMASAWYHVTYHPKYCKDSTNCLS 1616
R+Y + KDRIL S+KSLQ+EA+ WF C+ ++ ++ASAWYHVTYHP Y ++ CLS
Sbjct: 886 NRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQRLASAWYHVTYHPSYFQEGITCLS 945
Query: 1617 FPWIVGENLLNIKSVKSRRV*TVNRYC 1697
FPWIV + LLNIKS S+ + T + C
Sbjct: 946 FPWIVADILLNIKSANSKNLKTSSVPC 972
>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
[Populus trichocarpa]
Length = 1110
Score = 743 bits (1918), Expect = 0.0
Identities = 364/558 (65%), Positives = 435/558 (77%), Gaps = 2/558 (0%)
Frame = +3
Query: 3 VAQKCGWSQTPSAFQIRYGGYKGVVAVDRSSFKKLSLRPSMLKFKSENRMLNVTSHTESL 182
VA KCG S TPSAFQIRYGGYKGVVAVDR+SF+KLSLR SMLKF SENRMLNVT +ES+
Sbjct: 555 VAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRMLNVTKWSESM 614
Query: 183 PCFLNREIVTLLSTLGIQDEKFEAMQREQVQFLDEMLTNGEAALDVLASTG--DTKSILV 356
PC+LNREI++LLSTLG+ DE F+A+Q++Q+ L +MLTN E+ALDVL + D+K+ILV
Sbjct: 615 PCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILV 674
Query: 357 DMLLQGYKPSKEPYLCMMLKSYRAYQLADIRSKCRVFVPKGRVLMGCLDETGTLSYGQVY 536
MLLQGY+P+ EPYL MML++Y L ++RS+CR+FVPKGR+L+GCLDE+G L YGQVY
Sbjct: 675 QMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVY 734
Query: 537 VRVTKTRAELQSGEQTFFRKXXXXXXXXXXXXXXXXXXXXNPCLHPGDIRVLQAVYEPAL 716
VR+T T+AELQ +Q+FFRK NPCLHPGDIRVL+AVY+ L
Sbjct: 735 VRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTK----NPCLHPGDIRVLEAVYDVEL 790
Query: 717 VEKGFVDCLVFPQKGDRPHPNECSGGDLDGDLFFVCWDEHLIPMHPDRPMDYIARRQRIL 896
EKG VDC++FPQ G RPHPNECSGGDLDGD FF+ WDE L+P H + PMDY+ RQRI+
Sbjct: 791 EEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQRIM 850
Query: 897 DHEVTLEEIQEFFVNYMINDNLGVIATAHLVHADREPQKARSKKCLDLATLHSMAVDFAK 1076
DH VTLEEIQ FFV+YMIND LG I+TAHLVHAD EP KARS+KCL LATLHSMAVDFAK
Sbjct: 851 DHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAK 910
Query: 1077 NGAPAEMPGELKPKVYPDFMEREDRPMYVSPGVLGKLYRATITSTENQEPDFIWSEKVAE 1256
GAPAEMP LKP+ +PDFMER ++ MY+S GVLGKLYR ST + +F+WS+K+AE
Sbjct: 911 TGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAE 970
Query: 1257 AAYDHDLEVNGFESLLEIAESCKMMYREKLSILMNYYGAGREEEILTGNLQNRSMYLDRD 1436
A YD DLEV GFE L IA K Y EK+S LM+YYGA E+EILTGNL++R YL RD
Sbjct: 971 ATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRD 1030
Query: 1437 KRKYREVKDRILTSIKSLQREARGWFNGSCEERDYTKMASAWYHVTYHPKYCKDSTNCLS 1616
RKY +VKDRIL S+K+L++EA+ WF SC ++ MASAWYHVTYHP Y + NCLS
Sbjct: 1031 NRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVTYHPTYFHERMNCLS 1090
Query: 1617 FPWIVGENLLNIKSVKSR 1670
FPWIVG+ LLNIKS+ SR
Sbjct: 1091 FPWIVGDILLNIKSLNSR 1108
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 719 bits (1856), Expect = 0.0
Identities = 353/555 (63%), Positives = 436/555 (78%), Gaps = 3/555 (0%)
Frame = +3
Query: 3 VAQKCGWSQTPSAFQIRYGGYKGVVAVDRSSFKKLSLRPSMLKFKSENRMLNVTSHTESL 182
VA+KCG + PSAFQIRYGGYKGVVAVDR+SF K+SLR SMLKF+S+ RMLNVT +ES+
Sbjct: 561 VAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESM 620
Query: 183 PCFLNREIVTLLSTLGIQDEKFEAMQREQVQFLDEMLTNGEAALDVLASTG--DTKSILV 356
PCFLNREIVTL STLGI+DE FE MQ EQ+ L +MLTN EAALD L S G ++K+ILV
Sbjct: 621 PCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILV 680
Query: 357 DMLLQGYKPSKEPYLCMMLKSYRAYQLADIRSKCRVFVPKGRVLMGCLDETGTLSYGQVY 536
+ML Q Y+P+ +PYL MML+++ L+D++S+CR+FVPKGR+L+GCLDETGTL+YGQVY
Sbjct: 681 EML-QFYEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVY 739
Query: 537 VRVTKTRAELQSGEQTFFRKXXXXXXXXXXXXXXXXXXXXNPCLHPGDIRVLQAVYEPAL 716
+ + +AEL+ +Q++FRK NPCLHPGD+RVL+AVYEP L
Sbjct: 740 LCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTK----NPCLHPGDVRVLEAVYEPQL 795
Query: 717 VEKGFVDCLVFPQKGDRPHPNECSGGDLDGDLFFVCWDEHLIPMHPDRPMDYIARRQRIL 896
EKG VDCLVFPQKG+RPHPNECSGGDLDGD FF+ WD+ LIP + PMDY RR RI+
Sbjct: 796 EEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIM 855
Query: 897 DHEVTLEEIQEFFVNYMINDNLGVIATAHLVHADREPQKARSKKCLDLATLHSMAVDFAK 1076
DHEVTLEEIQ+FFV+YMIND LG I+TAHLVHADREP KA S+ CL LATLHSMAVDFAK
Sbjct: 856 DHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALATLHSMAVDFAK 915
Query: 1077 NGAPAEMPGELKPKVYPDFMEREDRPMYVSPGVLGKLYRATITSTENQEPDFIWSEKVAE 1256
GAPAEMP LKP+ +PDFM+R ++PMY S GVLGKLYRATI ST F+W++++AE
Sbjct: 916 TGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWTKEMAE 975
Query: 1257 AAYDHDLEVNGFESLLEIAESCKMMYREKLSILMNYYGAGREEEILTGNLQNRSMYLDRD 1436
YDHDLEVNGFESL+ +AE+ K MY E++S+LM+YY E+EILTGN+ N++ +L RD
Sbjct: 976 LVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQFLLRD 1035
Query: 1437 KRKYREVKDRILTSIKSLQREARGWFNGSCEERD-YTKMASAWYHVTYHPKYCKDSTNCL 1613
R+Y E+K+RI+ S+K LQREA+ WF SC + D + K+ASAWY+VTYHP Y ++ N L
Sbjct: 1036 NRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFQERMNSL 1095
Query: 1614 SFPWIVGENLLNIKS 1658
SFPWIVG+ LL +KS
Sbjct: 1096 SFPWIVGDILLRVKS 1110
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 718 bits (1853), Expect = 0.0
Identities = 354/555 (63%), Positives = 437/555 (78%), Gaps = 3/555 (0%)
Frame = +3
Query: 3 VAQKCGWSQTPSAFQIRYGGYKGVVAVDRSSFKKLSLRPSMLKFKSENRMLNVTSHTESL 182
VA+KCG + PSAFQIRYGGYKGVVAVDR+SF K+SLR SMLKF+S+ RMLNVT +ES+
Sbjct: 561 VAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESM 620
Query: 183 PCFLNREIVTLLSTLGIQDEKFEAMQREQVQFLDEMLTNGEAALDVLASTG--DTKSILV 356
PCFLNREIVTL STLGI+DE FE MQ EQ+ L +MLTN EAALD L S G ++K+ILV
Sbjct: 621 PCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILV 680
Query: 357 DMLLQGYKPSKEPYLCMMLKSYRAYQLADIRSKCRVFVPKGRVLMGCLDETGTLSYGQVY 536
+ML Q +P+ +PYL MML+++ L+D++S+CR+FVPKGR+L+GCLDETGTL+YGQVY
Sbjct: 681 EML-QFDEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVY 739
Query: 537 VRVTKTRAELQSGEQTFFRKXXXXXXXXXXXXXXXXXXXXNPCLHPGDIRVLQAVYEPAL 716
+ + +AEL+ +Q++FRK NPCLHPGD+RVL+AVYEP L
Sbjct: 740 LCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTK----NPCLHPGDVRVLEAVYEPQL 795
Query: 717 VEKGFVDCLVFPQKGDRPHPNECSGGDLDGDLFFVCWDEHLIPMHPDRPMDYIARRQRIL 896
EKG VDCLVFP+KG+RPHPNECSGGDLDGD FF+ WD+ LIP + PMDY RR RI+
Sbjct: 796 EEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIM 855
Query: 897 DHEVTLEEIQEFFVNYMINDNLGVIATAHLVHADREPQKARSKKCLDLATLHSMAVDFAK 1076
DHEVTLEEIQ+FFV+YMIND LG I+TAHLVHADREP KARS+ CL LATLHSMAVDFAK
Sbjct: 856 DHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHSMAVDFAK 915
Query: 1077 NGAPAEMPGELKPKVYPDFMEREDRPMYVSPGVLGKLYRATITSTENQEPDFIWSEKVAE 1256
GAPAEMP LKP+ +PDFM+R ++PMY S GVLGKLYRATI ST F+W++++AE
Sbjct: 916 TGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQIRSKFVWTKEMAE 975
Query: 1257 AAYDHDLEVNGFESLLEIAESCKMMYREKLSILMNYYGAGREEEILTGNLQNRSMYLDRD 1436
AYDHDLEVNGFESL+ +AE+ K MY E++S+LM+YY E+EILTGN+ N++ +L RD
Sbjct: 976 LAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLLRD 1035
Query: 1437 KRKYREVKDRILTSIKSLQREARGWFNGSCEERD-YTKMASAWYHVTYHPKYCKDSTNCL 1613
R+Y E+K+RI+ S+K LQREA+ WF SC + D + K+ASAWY+VTYHP Y ++ N L
Sbjct: 1036 NRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEERMNSL 1095
Query: 1614 SFPWIVGENLLNIKS 1658
SFPWIVG+ LL IKS
Sbjct: 1096 SFPWIVGDILLRIKS 1110