BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000948
         (1792 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex s...   731   0.0  
ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...   731   0.0  
ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arab...   729   0.0  
ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arab...   728   0.0  
ref|XP_003531534.1| PREDICTED: H/ACA ribonucleoprotein complex s...   724   0.0  

>ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
            max]
          Length = 589

 Score =  731 bits (1888), Expect = 0.0
 Identities = 372/494 (75%), Positives = 402/494 (81%), Gaps = 3/494 (0%)
 Frame = +2

Query: 221  LIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGVINLDK 400
            +IKPQSFTP +DTSQWPILLKNY+RLNVRTGHYTP+PSG+SPLKRPL  Y++YGV+NLDK
Sbjct: 34   MIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDK 93

Query: 401  PANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 580
            PANPSSHEVVAWIKRLLR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI
Sbjct: 94   PANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 153

Query: 581  ARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLIVF 760
            ARLHS VPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD D+HL+VF
Sbjct: 154  ARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVF 213

Query: 761  WISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMDAQWVFDNN 940
            WISCEAGTYVRTMC            MQELRRVRSGIMGEKDNMV+MHDVMDAQWV+DN 
Sbjct: 214  WISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNY 273

Query: 941  RDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLM 1120
            RDE YLRRV+MPLE+LLTSYKRLVVKDSAVNAICYGAK MIPGLLRFEN+I+ GEEVVLM
Sbjct: 274  RDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLM 333

Query: 1121 TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMVAEG 1300
            TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKK++++EG
Sbjct: 334  TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEG 393

Query: 1301 LLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXXXXXXXXXX 1480
             LDKHGKPNEKTP EW RN+VLPTGGD+++AG AAA EP                     
Sbjct: 394  KLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEP-----------EDDKIQKKEG 442

Query: 1481 XXXXXAPKTEDNNASPAPVPTKKIKVEEAEETVLK---KAKEEGEELVETVASXXXXXXX 1651
                   K  ++  SP  VP KK+KV+E EE   +   K K+  EE VE           
Sbjct: 443  DGEGKKRKKHESTDSPVAVPAKKVKVDEVEEVEKQEKVKVKKVDEETVEVEVEKKEKKKK 502

Query: 1652 XXXXXXNGEAASPD 1693
                  N EAAS D
Sbjct: 503  KKKNKENSEAASSD 516


>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]
          Length = 586

 Score =  731 bits (1887), Expect = 0.0
 Identities = 368/467 (78%), Positives = 397/467 (85%), Gaps = 2/467 (0%)
 Frame = +2

Query: 206  KQSDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGV 385
            K  ++LIKPQSFTP+LDTSQWPILLKNYDRLNVRTGHYTPLPSG+SPLKRPL  YIRYG+
Sbjct: 35   KDGEFLIKPQSFTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGI 94

Query: 386  INLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 565
            +NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK
Sbjct: 95   LNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 154

Query: 566  EYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADK 745
            EYVC+ARLHS+VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD D+
Sbjct: 155  EYVCVARLHSSVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDR 214

Query: 746  HLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMDAQW 925
            HL+VFWISCEAGTYVRT+C            MQELRRVRSGI+GEKDNMVTMHDVMDAQW
Sbjct: 215  HLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQW 274

Query: 926  VFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGE 1105
            V+DN RDE+YLRRVIMPLEV+LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGE
Sbjct: 275  VYDNYRDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGE 334

Query: 1106 EVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKK 1285
            EVVLMTTKGEAIALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRA+MKKK
Sbjct: 335  EVVLMTTKGEAIALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMKKK 394

Query: 1286 MVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXXXXX 1465
            ++ EG L+KHGKPNE TP+EW RNVVLPTGGD+MVA  AAA EP                
Sbjct: 395  LITEGKLNKHGKPNENTPSEWLRNVVLPTGGDSMVASLAAAVEP---------TVKAETD 445

Query: 1466 XXXXXXXXXXAPKTEDNNASPAPVPTKKIK--VEEAEETVLKKAKEE 1600
                        K  ++   P  VP KKIK  +EE  E V  + KE+
Sbjct: 446  VKEEIDGEQRKRKLNESTDDPVTVPAKKIKKEIEEVSEFVETEKKEK 492


>ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
            gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA
            ribonucleoprotein complex subunit 4; AltName: Full=CBF5
            homolog; AltName: Full=Dyskerin; AltName:
            Full=Nopp-140-associated protein of 57 kDa homolog;
            Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
            homolog gi|8901186|gb|AAF43210.2|AF234984_1 putative
            pseudouridine synthase [Arabidopsis thaliana]
            gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis
            thaliana] gi|28392852|gb|AAO41863.1| unknown protein
            [Arabidopsis thaliana] gi|225898727|dbj|BAH30494.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein
            complex subunit 4 [Arabidopsis thaliana]
          Length = 565

 Score =  729 bits (1882), Expect = 0.0
 Identities = 372/487 (76%), Positives = 407/487 (83%), Gaps = 9/487 (1%)
 Frame = +2

Query: 197  DPPKQSDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 376
            D     DY+IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G SPLKRPL+ YIR
Sbjct: 20   DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIR 79

Query: 377  YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 556
            YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 80   YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139

Query: 557  AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 736
            AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD
Sbjct: 140  AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 199

Query: 737  ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 916
            AD+HL+VFW+SCEAGTY+RTMC            MQELRRVRSGI+GE +NMVTMHDVMD
Sbjct: 200  ADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMD 259

Query: 917  AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1096
            AQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+I+
Sbjct: 260  AQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 319

Query: 1097 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1276
             G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM
Sbjct: 320  VGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 379

Query: 1277 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1456
            KKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG AAA E I A          
Sbjct: 380  KKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEA 439

Query: 1457 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKV-----EEAEETV----LKKAKEEGEE 1609
                           K +D++ SPAPV TKK K      EEAEE V     KK K++ EE
Sbjct: 440  RKR------------KHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKEEE 487

Query: 1610 LVETVAS 1630
              E   S
Sbjct: 488  KEEEAGS 494


>ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
            lyrata] gi|297323972|gb|EFH54393.1| hypothetical protein
            ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score =  728 bits (1878), Expect = 0.0
 Identities = 368/487 (75%), Positives = 406/487 (83%), Gaps = 9/487 (1%)
 Frame = +2

Query: 197  DPPKQSDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 376
            D     DY+IKPQSFTP +DTSQWPILLKNYD LNVRTGHYTP+ +G+SPLKRPL+ YIR
Sbjct: 20   DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDLLNVRTGHYTPISAGYSPLKRPLQEYIR 79

Query: 377  YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 556
            YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 80   YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139

Query: 557  AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 736
            AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD
Sbjct: 140  AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 199

Query: 737  ADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMD 916
            AD+HL+VFW+SCEAGTY+RTMC            MQELRRVRSGI+GE +NMVTMHDVMD
Sbjct: 200  ADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMD 259

Query: 917  AQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 1096
            AQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEN+I+
Sbjct: 260  AQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 319

Query: 1097 NGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 1276
             G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM
Sbjct: 320  VGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASM 379

Query: 1277 KKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXX 1456
            KKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG AAA   I A          
Sbjct: 380  KKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPVEIKAEAENGEAGEV 439

Query: 1457 XXXXXXXXXXXXXAPKTEDNNASPAPVPTKKIKVEEAE---------ETVLKKAKEEGEE 1609
                           K +D++ SPAPV TKK K +E E          +  KK K++GEE
Sbjct: 440  RKR------------KHDDSSDSPAPVSTKKSKTKEVEGDESEEKVKSSKKKKKKDKGEE 487

Query: 1610 LVETVAS 1630
              E V S
Sbjct: 488  KEEEVGS 494


>ref|XP_003531534.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
            max]
          Length = 555

 Score =  724 bits (1870), Expect = 0.0
 Identities = 370/495 (74%), Positives = 399/495 (80%), Gaps = 4/495 (0%)
 Frame = +2

Query: 221  LIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGVINLDK 400
            +IKPQSFTP +DTSQWPILLKNY+RLNVRTGHYTP+PSG+SPLKRPL  Y++YGV+NLDK
Sbjct: 1    MIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLSEYLKYGVLNLDK 60

Query: 401  PANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 580
            PANPSSHEVVAWIKRLLR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI
Sbjct: 61   PANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 120

Query: 581  ARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLIVF 760
            ARLHSAVPD+SKV+RALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD D+HL+VF
Sbjct: 121  ARLHSAVPDISKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVF 180

Query: 761  WISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGIMGEKDNMVTMHDVMDAQWVFDNN 940
            WISCEAGTYVRTMC            MQELRRVRSGIMGEKDNMV+MHDVMDAQWV+DN 
Sbjct: 181  WISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNY 240

Query: 941  RDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLM 1120
            RDE YLRRV+MPLE+LLTSYKRLVVKDSAVNAICYGAK MIPGLLRFEN+I+ GEEVVLM
Sbjct: 241  RDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLM 300

Query: 1121 TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMVAEG 1300
            TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKK++++EG
Sbjct: 301  TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEG 360

Query: 1301 LLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHAAATEPIPAXXXXXXXXXXXXXXXXXX 1480
             LDKHGKPNEKTP EW RN+VLPTGGD+M+AG AAA EP                     
Sbjct: 361  KLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGLAAAPEP----------EDDKLQKKEEG 410

Query: 1481 XXXXXAPKTEDNNASPAPVPTKKIK----VEEAEETVLKKAKEEGEELVETVASXXXXXX 1648
                   K  ++  S   VP KK K    VEE E+    K K+  EE VE          
Sbjct: 411  DGEGKKRKKHESTDSLVAVPAKKAKVVDEVEELEKLEKVKVKKVDEETVEVEVEKKEKKK 470

Query: 1649 XXXXXXXNGEAASPD 1693
                   N E AS D
Sbjct: 471  KKKKDKENSEVASSD 485