BLASTX nr result
ID: Coptis21_contig00000822
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00000822
(2871 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516534.1| Poly(A) polymerase beta, putative [Ricinus c... 785 0.0
emb|CBI36047.3| unnamed protein product [Vitis vinifera] 769 0.0
ref|XP_002277939.1| PREDICTED: poly(A) polymerase-like [Vitis vi... 769 0.0
ref|XP_004148426.1| PREDICTED: poly(A) polymerase-like [Cucumis ... 754 0.0
ref|XP_004164768.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) poly... 753 0.0
>ref|XP_002516534.1| Poly(A) polymerase beta, putative [Ricinus communis]
gi|223544354|gb|EEF45875.1| Poly(A) polymerase beta,
putative [Ricinus communis]
Length = 754
Score = 785 bits (2028), Expect = 0.0
Identities = 370/430 (86%), Positives = 405/430 (94%)
Frame = +3
Query: 15 GVTSPISVAGPTEVDIRRSFELDKFLVDAGLYESVDETLKREEVLSQIDQVVKAWVKQLT 194
G+T PIS+AGP+E D+ R+ +L KFLVD+GLYES +E LKREEVL +IDQ+VK W+KQLT
Sbjct: 28 GITKPISLAGPSEADLLRNADLVKFLVDSGLYESKEENLKREEVLCRIDQIVKDWIKQLT 87
Query: 195 RQRGYTDQMVQDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDILAD 374
RQRGY+DQMV +ANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFI+LHDILA+
Sbjct: 88 RQRGYSDQMVDEANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFILLHDILAE 147
Query: 375 MGDVTELQPVPDAHVPVMKFKLRGISVDLLYASISVLVVPQDLDISHGSVLYNVDEQTVR 554
M ++TELQPVPDAHVPVMKFK +GIS+DLLYASIS+ VVP+DLDISHGSVLY+VDEQTVR
Sbjct: 148 MDEITELQPVPDAHVPVMKFKFQGISIDLLYASISLPVVPEDLDISHGSVLYDVDEQTVR 207
Query: 555 SLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQL 734
SLNGCRVADQIL+LVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR+CQL
Sbjct: 208 SLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARLCQL 267
Query: 735 YPNANPSMLVSRFFRVYTQWRWPNPVMLCSIEEDDLGFPVWDPRKNPRDRTHHMPIITPA 914
YPNA PSMLVSRFFRVYTQWRWPNPVMLC+IEED+LGFPVWDPR+NPRDR HHMPIITPA
Sbjct: 268 YPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDPRRNPRDRFHHMPIITPA 327
Query: 915 YPCMNSSYNVSTSTRRVMMEQFQNGNKICEDIELSKAQWRALFEPYLFFETYKNYLQVDI 1094
YPCMNSSYNVS ST RVMMEQFQ GNKICE+IEL+KAQW ALFEPYLFFE YKNYLQ+DI
Sbjct: 328 YPCMNSSYNVSISTLRVMMEQFQYGNKICEEIELNKAQWSALFEPYLFFEAYKNYLQIDI 387
Query: 1095 VAADGDDLLSWKGWVESRLRQLTLMIERDTIGMLQCHPYPSEYVDTSKQSPHCAFFMGLQ 1274
+AAD DDLL+WKGWVESRLRQLTL IERDTIGMLQCHPYP+EY+DTSKQ PHCAFFMGLQ
Sbjct: 388 IAADADDLLAWKGWVESRLRQLTLKIERDTIGMLQCHPYPNEYIDTSKQCPHCAFFMGLQ 447
Query: 1275 REQGVSVQEG 1304
R +GVS QEG
Sbjct: 448 RRKGVSGQEG 457
Score = 67.0 bits (162), Expect = 3e-08
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +1
Query: 1429 MEIFVSHVRRRQLPSFVFPDGYKRPRPSRLISPQ--QPDKISPGEECGINSTXXXXXXXX 1602
M+++VSH RRRQLP+FVFPDGYKR R SR + Q +P +S G +
Sbjct: 483 MDVYVSHARRRQLPAFVFPDGYKRSRTSRHPNQQAGKPSDVSATSRAG---SVEGHLKRK 539
Query: 1603 STEEVADLGTNRPEKRASNSLERL 1674
+ EV D+ ++PEKRAS S +RL
Sbjct: 540 NDHEVVDVRPDKPEKRASVSPQRL 563
>emb|CBI36047.3| unnamed protein product [Vitis vinifera]
Length = 677
Score = 769 bits (1986), Expect = 0.0
Identities = 371/432 (85%), Positives = 395/432 (91%)
Frame = +3
Query: 9 QRGVTSPISVAGPTEVDIRRSFELDKFLVDAGLYESVDETLKREEVLSQIDQVVKAWVKQ 188
Q GVT PISVAGPTEVDI+RS EL+KFLVDAGLYES +E +KR EVL ++ Q+VK WVKQ
Sbjct: 18 QYGVTKPISVAGPTEVDIQRSLELEKFLVDAGLYESKEEAIKRAEVLDRLGQIVKDWVKQ 77
Query: 189 LTRQRGYTDQMVQDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDIL 368
LTR RGYTDQMV+DANAV+FTFGSYRLGVHGPG DIDTLC+GPSYV+REEDFF ILH+IL
Sbjct: 78 LTRLRGYTDQMVEDANAVLFTFGSYRLGVHGPGTDIDTLCIGPSYVSREEDFFFILHNIL 137
Query: 369 ADMGDVTELQPVPDAHVPVMKFKLRGISVDLLYASISVLVVPQDLDISHGSVLYNVDEQT 548
ADM +VTELQPVPDAHVPVMKFK GIS+DLLYASIS+LVVP+DLDIS SVLYN+DE T
Sbjct: 138 ADMEEVTELQPVPDAHVPVMKFKFDGISIDLLYASISLLVVPEDLDISDLSVLYNIDEPT 197
Query: 549 VRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC 728
VRSLNGCRVADQIL+LVPNVEHF TTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC
Sbjct: 198 VRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC 257
Query: 729 QLYPNANPSMLVSRFFRVYTQWRWPNPVMLCSIEEDDLGFPVWDPRKNPRDRTHHMPIIT 908
QLYPNA PSMLVSRFFRVYTQWRWPNPVMLC+IEED+LGF VWDPRKNPRDRTHHMPIIT
Sbjct: 258 QLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFSVWDPRKNPRDRTHHMPIIT 317
Query: 909 PAYPCMNSSYNVSTSTRRVMMEQFQNGNKICEDIELSKAQWRALFEPYLFFETYKNYLQV 1088
PAYPCMNSSYNVS ST RVMMEQFQ GNKICE IELS AQW ALFEPYLFFE+YKNYLQV
Sbjct: 318 PAYPCMNSSYNVSISTLRVMMEQFQYGNKICEGIELSNAQWGALFEPYLFFESYKNYLQV 377
Query: 1089 DIVAADGDDLLSWKGWVESRLRQLTLMIERDTIGMLQCHPYPSEYVDTSKQSPHCAFFMG 1268
DIVA D DDL +WKGWVESRLRQLTLMIERDT G LQCHPYP EYVDTSKQ HCAFFMG
Sbjct: 378 DIVAVDIDDLRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPHEYVDTSKQCSHCAFFMG 437
Query: 1269 LQREQGVSVQEG 1304
LQR+QG +QEG
Sbjct: 438 LQRKQGEIIQEG 449
Score = 74.7 bits (182), Expect = 1e-10
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Frame = +2
Query: 2120 NSRTHTGSVVGSNSQCSSLGDALDGNLELLAENGCLDHCGSFQD-VTEDLQPNIAIGVFL 2296
+S +TGSV GSN S GD+ + + ELL ENGC++ FQD + E+L+PN A+G+ L
Sbjct: 593 SSDGNTGSVEGSNILGISQGDSCEADSELLLENGCVNAKEGFQDGLHEELEPNAALGIVL 652
Query: 2297 KARDGVNSDSSQKSVI-RLSLTSTA 2368
K+R GV+S+ KSV+ RLSLTSTA
Sbjct: 653 KSRGGVDSEPVPKSVLSRLSLTSTA 677
Score = 60.8 bits (146), Expect = 2e-06
Identities = 26/40 (65%), Positives = 34/40 (85%)
Frame = +1
Query: 1429 MEIFVSHVRRRQLPSFVFPDGYKRPRPSRLISPQQPDKIS 1548
MEI+VSHVRR+Q+PS+VFP+GYKR RP R ++ QQ D+ S
Sbjct: 475 MEIYVSHVRRKQIPSYVFPEGYKRSRPQRPVNQQQGDEAS 514
>ref|XP_002277939.1| PREDICTED: poly(A) polymerase-like [Vitis vinifera]
Length = 770
Score = 769 bits (1986), Expect = 0.0
Identities = 371/432 (85%), Positives = 395/432 (91%)
Frame = +3
Query: 9 QRGVTSPISVAGPTEVDIRRSFELDKFLVDAGLYESVDETLKREEVLSQIDQVVKAWVKQ 188
Q GVT PISVAGPTEVDI+RS EL+KFLVDAGLYES +E +KR EVL ++ Q+VK WVKQ
Sbjct: 18 QYGVTKPISVAGPTEVDIQRSLELEKFLVDAGLYESKEEAIKRAEVLDRLGQIVKDWVKQ 77
Query: 189 LTRQRGYTDQMVQDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDIL 368
LTR RGYTDQMV+DANAV+FTFGSYRLGVHGPG DIDTLC+GPSYV+REEDFF ILH+IL
Sbjct: 78 LTRLRGYTDQMVEDANAVLFTFGSYRLGVHGPGTDIDTLCIGPSYVSREEDFFFILHNIL 137
Query: 369 ADMGDVTELQPVPDAHVPVMKFKLRGISVDLLYASISVLVVPQDLDISHGSVLYNVDEQT 548
ADM +VTELQPVPDAHVPVMKFK GIS+DLLYASIS+LVVP+DLDIS SVLYN+DE T
Sbjct: 138 ADMEEVTELQPVPDAHVPVMKFKFDGISIDLLYASISLLVVPEDLDISDLSVLYNIDEPT 197
Query: 549 VRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC 728
VRSLNGCRVADQIL+LVPNVEHF TTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC
Sbjct: 198 VRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC 257
Query: 729 QLYPNANPSMLVSRFFRVYTQWRWPNPVMLCSIEEDDLGFPVWDPRKNPRDRTHHMPIIT 908
QLYPNA PSMLVSRFFRVYTQWRWPNPVMLC+IEED+LGF VWDPRKNPRDRTHHMPIIT
Sbjct: 258 QLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFSVWDPRKNPRDRTHHMPIIT 317
Query: 909 PAYPCMNSSYNVSTSTRRVMMEQFQNGNKICEDIELSKAQWRALFEPYLFFETYKNYLQV 1088
PAYPCMNSSYNVS ST RVMMEQFQ GNKICE IELS AQW ALFEPYLFFE+YKNYLQV
Sbjct: 318 PAYPCMNSSYNVSISTLRVMMEQFQYGNKICEGIELSNAQWGALFEPYLFFESYKNYLQV 377
Query: 1089 DIVAADGDDLLSWKGWVESRLRQLTLMIERDTIGMLQCHPYPSEYVDTSKQSPHCAFFMG 1268
DIVA D DDL +WKGWVESRLRQLTLMIERDT G LQCHPYP EYVDTSKQ HCAFFMG
Sbjct: 378 DIVAVDIDDLRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPHEYVDTSKQCSHCAFFMG 437
Query: 1269 LQREQGVSVQEG 1304
LQR+QG +QEG
Sbjct: 438 LQRKQGEIIQEG 449
Score = 67.8 bits (164), Expect = 2e-08
Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +2
Query: 2120 NSRTHTGSVVGSNSQCSSLGDALDGNLELLAENGCLDHCGSFQD-VTEDLQPNIAIGVFL 2296
+S +TGSV GSN S GD+ + + ELL ENGC++ FQD + E+L+PN A+G+ L
Sbjct: 672 SSDGNTGSVEGSNILGISQGDSCEADSELLLENGCVNAKEGFQDGLHEELEPNAALGIVL 731
Query: 2297 KARDGVNSDSSQKSVIR 2347
K+R GV+S+ KSV+R
Sbjct: 732 KSRGGVDSEPVPKSVLR 748
Score = 63.9 bits (154), Expect = 2e-07
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +1
Query: 1429 MEIFVSHVRRRQLPSFVFPDGYKRPRPSRLISPQQPDKISPGEECGINSTXXXXXXXXST 1608
MEI+VSHVRR+Q+PS+VFP+GYKR RP R ++ QQ D E C S+
Sbjct: 475 MEIYVSHVRRKQIPSYVFPEGYKRSRPQRPVNQQQGD-----EACRTGSSEKHMKRKKDP 529
Query: 1609 EEVADLGTNRPEKRASNSLER 1671
EEV D+ ++ KR + S +R
Sbjct: 530 EEV-DVEQDKAAKRLTISPQR 549
>ref|XP_004148426.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 863
Score = 754 bits (1948), Expect = 0.0
Identities = 363/430 (84%), Positives = 395/430 (91%)
Frame = +3
Query: 15 GVTSPISVAGPTEVDIRRSFELDKFLVDAGLYESVDETLKREEVLSQIDQVVKAWVKQLT 194
GVT PIS+AGP + DI R+ EL+KFLVD+ LYES +E KREEVL +IDQ+VK+WVKQLT
Sbjct: 21 GVTKPISLAGPMDADIHRNIELEKFLVDSELYESKEEAAKREEVLGRIDQIVKSWVKQLT 80
Query: 195 RQRGYTDQMVQDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDILAD 374
RGYT+QMV+DANAVIFTFGSYRLGVHGPG+DIDTLCVGPSYVNRE DFFIILH+ILA+
Sbjct: 81 LLRGYTEQMVEDANAVIFTFGSYRLGVHGPGSDIDTLCVGPSYVNRE-DFFIILHNILAE 139
Query: 375 MGDVTELQPVPDAHVPVMKFKLRGISVDLLYASISVLVVPQDLDISHGSVLYNVDEQTVR 554
M +VT+LQPVPDAHVPVM+FK GIS+DLLYASIS+LVVP+DLDISHGSVLYNVDEQTVR
Sbjct: 140 MEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPEDLDISHGSVLYNVDEQTVR 199
Query: 555 SLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQL 734
SLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA+VCQL
Sbjct: 200 SLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAQVCQL 259
Query: 735 YPNANPSMLVSRFFRVYTQWRWPNPVMLCSIEEDDLGFPVWDPRKNPRDRTHHMPIITPA 914
YPNA PSMLVSRFFRVYTQWRWPNPVMLCSIEE++LGFPVWDPR+NPRDR H MPIITPA
Sbjct: 260 YPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRRNPRDRFHLMPIITPA 319
Query: 915 YPCMNSSYNVSTSTRRVMMEQFQNGNKICEDIELSKAQWRALFEPYLFFETYKNYLQVDI 1094
YPCMNSSYNVSTST RVMMEQF+ GN ICE+I+LSKAQW ALFEPYLFFETYKNYLQVDI
Sbjct: 320 YPCMNSSYNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSALFEPYLFFETYKNYLQVDI 379
Query: 1095 VAADGDDLLSWKGWVESRLRQLTLMIERDTIGMLQCHPYPSEYVDTSKQSPHCAFFMGLQ 1274
+AAD DDLL+WKGWVESR RQLTL IERDT GMLQCHPYP EY DTSK HCAFFMGLQ
Sbjct: 380 IAADADDLLAWKGWVESRFRQLTLKIERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQ 439
Query: 1275 REQGVSVQEG 1304
R++G+ Q G
Sbjct: 440 RKEGLRGQGG 449
>ref|XP_004164768.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) polymerase-like [Cucumis
sativus]
Length = 544
Score = 753 bits (1943), Expect = 0.0
Identities = 362/430 (84%), Positives = 394/430 (91%)
Frame = +3
Query: 15 GVTSPISVAGPTEVDIRRSFELDKFLVDAGLYESVDETLKREEVLSQIDQVVKAWVKQLT 194
GVT PIS+AGP + DI R+ EL+KFLVD+ LYES +E KREEVL +IDQ+VK+WVKQLT
Sbjct: 21 GVTKPISLAGPMDADIHRNIELEKFLVDSELYESKEEAAKREEVLGRIDQIVKSWVKQLT 80
Query: 195 RQRGYTDQMVQDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDILAD 374
RGYT+QMV+DANAV FTFGSYRLGVHGPG+DIDTLCVGPSYVNRE DFFIILH+ILA+
Sbjct: 81 LLRGYTEQMVEDANAVXFTFGSYRLGVHGPGSDIDTLCVGPSYVNRE-DFFIILHNILAE 139
Query: 375 MGDVTELQPVPDAHVPVMKFKLRGISVDLLYASISVLVVPQDLDISHGSVLYNVDEQTVR 554
M +VT+LQPVPDAHVPVM+FK GIS+DLLYASIS+LVVP+DLDISHGSVLYNVDEQTVR
Sbjct: 140 MEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPEDLDISHGSVLYNVDEQTVR 199
Query: 555 SLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQL 734
SLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA+VCQL
Sbjct: 200 SLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAQVCQL 259
Query: 735 YPNANPSMLVSRFFRVYTQWRWPNPVMLCSIEEDDLGFPVWDPRKNPRDRTHHMPIITPA 914
YPNA PSMLVSRFFRVYTQWRWPNPVMLCSIEE++LGFPVWDPR+NPRDR H MPIITPA
Sbjct: 260 YPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRRNPRDRFHLMPIITPA 319
Query: 915 YPCMNSSYNVSTSTRRVMMEQFQNGNKICEDIELSKAQWRALFEPYLFFETYKNYLQVDI 1094
YPCMNSSYNVSTST RVMMEQF+ GN ICE+I+LSKAQW ALFEPYLFFETYKNYLQVDI
Sbjct: 320 YPCMNSSYNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSALFEPYLFFETYKNYLQVDI 379
Query: 1095 VAADGDDLLSWKGWVESRLRQLTLMIERDTIGMLQCHPYPSEYVDTSKQSPHCAFFMGLQ 1274
+AAD DDLL+WKGWVESR RQLTL IERDT GMLQCHPYP EY DTSK HCAFFMGLQ
Sbjct: 380 IAADADDLLAWKGWVESRFRQLTLKIERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQ 439
Query: 1275 REQGVSVQEG 1304
R++G+ Q G
Sbjct: 440 RKEGLRGQGG 449