BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000673
         (1343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chlor...   441   e-121
gb|ABK95213.1| unknown [Populus trichocarpa]                          424   e-116
ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|2...   419   e-114
ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus ...   413   e-113
ref|NP_566579.1| 50S ribosomal protein L3-2 [Arabidopsis thalian...   409   e-112

>ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis vinifera]
            gi|297736812|emb|CBI26013.3| unnamed protein product
            [Vitis vinifera]
          Length = 307

 Score =  441 bits (1135), Expect = e-121
 Identities = 221/310 (71%), Positives = 245/310 (79%)
 Frame = +1

Query: 226  MLAASKNIITHLXXXXXXXXXXXIFFHLRRRRFSSGESLILEDDHDGSNVIKSGIMTPKS 405
            M AAS+ +I+             I    + RRF S ESLI  D+     V K G+M+P S
Sbjct: 1    MSAASRGLISGFRFLSIGPRTSAIVASYQFRRFGS-ESLI--DEEPRIIVPKPGVMSPNS 57

Query: 406  KRTGVIAVKCGMTALWDKWGARIPITVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKH 585
            KRTG IAVKCGM+ALWDKWGAR+PITVLW+DDNIV+Q KT +KE   ALQ+GCGQKK KH
Sbjct: 58   KRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEKEGLNALQVGCGQKKAKH 117

Query: 586  LTKPEVGHFRSQGVPMKRKLREFPVTEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQ 765
            LTKPEVGHFR+QGVP+KRKLREFPVTEDALLPVGT I VRHFVPGQYVDVTGI++GKGFQ
Sbjct: 118  LTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQYVDVTGITRGKGFQ 177

Query: 766  GGMKRWGFRGMPASHGASLSHRSIGSTGQRDAPGRVFXXXXXXXXXXXXQITVKNVWVYK 945
            GGMKRWGF+GMPASHGASLSHRSIGSTGQRDAPG+VF            Q TVKNVWVYK
Sbjct: 178  GGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKGKKMPGRMGGKQRTVKNVWVYK 237

Query: 946  IDPGRNLMWVRGQVPGAEGNFVFIKDAVYKKPDHSVLPFPTYLSAPDGETAELESLVADL 1125
            IDP RNLMWVRGQVPGAEGNFVFIKDAVYKKPD S+LPFPTY  A D +   LE +VADL
Sbjct: 238  IDPTRNLMWVRGQVPGAEGNFVFIKDAVYKKPDASILPFPTYFPAEDEDPTVLEPIVADL 297

Query: 1126 GELDPFMAAD 1155
            G++DPFM AD
Sbjct: 298  GDIDPFMVAD 307


>gb|ABK95213.1| unknown [Populus trichocarpa]
          Length = 315

 Score =  424 bits (1089), Expect = e-116
 Identities = 208/268 (77%), Positives = 226/268 (84%), Gaps = 2/268 (0%)
 Frame = +1

Query: 358  HDGSNVI--KSGIMTPKSKRTGVIAVKCGMTALWDKWGARIPITVLWVDDNIVTQTKTLD 531
            H  S +I  K G+MTP SKRTGV+AVKCGMTALWDKWGARIPITVLWVDDNIV+Q KT++
Sbjct: 50   HQQSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIPITVLWVDDNIVSQVKTVE 109

Query: 532  KEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPVTEDALLPVGTPITVRHF 711
            KE   ALQ+GCGQKKEKHLTKPEVGHFR+QGVPMKRKLREFPVTEDALLPVGT + VRHF
Sbjct: 110  KEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVGTYVGVRHF 169

Query: 712  VPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIGSTGQRDAPGRVFXXXXX 891
            VPGQ+VDV GI+ GKGFQGGMKR GF+G PASHGASLSHRSIGSTGQRDAPG+VF     
Sbjct: 170  VPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIGSTGQRDAPGKVFKGKKM 229

Query: 892  XXXXXXXQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIKDAVYKKPDHSVLPFPTY 1071
                   Q TVKNVWVYKIDP RNLMWV+GQVPGAEGNFVFIKD+VYKKPD  +LPFPTY
Sbjct: 230  PGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIKDSVYKKPDIQMLPFPTY 289

Query: 1072 LSAPDGETAELESLVADLGELDPFMAAD 1155
              A D + A  E LVADLGE+DPFM AD
Sbjct: 290  FGAEDDDNA--EPLVADLGEVDPFMVAD 315


>ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|222864508|gb|EEF01639.1|
            predicted protein [Populus trichocarpa]
          Length = 320

 Score =  419 bits (1076), Expect = e-114
 Identities = 212/290 (73%), Positives = 234/290 (80%), Gaps = 10/290 (3%)
 Frame = +1

Query: 316  RRFSSGESLILEDDHDGSNV----------IKSGIMTPKSKRTGVIAVKCGMTALWDKWG 465
            RRFSS ++L+     DGS +           K G+MTP SKRTGVIAVKCGMTALWDKWG
Sbjct: 39   RRFSS-DALV-----DGSEIQYQQPSRIIEAKPGVMTPNSKRTGVIAVKCGMTALWDKWG 92

Query: 466  ARIPITVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKL 645
            ARIPITVLWVDDNIV+Q KT++KE   ALQ+GCGQKKEKHLTKPEVGHFR+QGVPMKRKL
Sbjct: 93   ARIPITVLWVDDNIVSQVKTVEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKL 152

Query: 646  REFPVTEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLS 825
            REFPVTE+ALLPVGT I VRHFVPGQ+VDV GI+ GKGFQGGMKR GF+G PASHGASLS
Sbjct: 153  REFPVTENALLPVGTCIGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLS 212

Query: 826  HRSIGSTGQRDAPGRVFXXXXXXXXXXXXQITVKNVWVYKIDPGRNLMWVRGQVPGAEGN 1005
            HRSIGSTGQRDAPG+VF            Q TVKNVWVYKIDP RNLMWV+GQVPGAEGN
Sbjct: 213  HRSIGSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGN 272

Query: 1006 FVFIKDAVYKKPDHSVLPFPTYLSAPDGETAELESLVADLGELDPFMAAD 1155
            FVFIKD+V+KKPD  +LPFPTY    D + +  E LVADLGE+DPFM AD
Sbjct: 273  FVFIKDSVFKKPDIQILPFPTYFETEDDDNS--EPLVADLGEVDPFMVAD 320


>ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus communis]
            gi|223541641|gb|EEF43190.1| 50S ribosomal protein L3,
            putative [Ricinus communis]
          Length = 311

 Score =  413 bits (1061), Expect = e-113
 Identities = 210/288 (72%), Positives = 231/288 (80%), Gaps = 8/288 (2%)
 Frame = +1

Query: 316  RRFSSGESLILEDDHDGSNV--------IKSGIMTPKSKRTGVIAVKCGMTALWDKWGAR 471
            RRFS  +SLI     DGS +         K GIMTP SKRTG+IA+KCGMTALWDKWG R
Sbjct: 32   RRFSI-DSLI-----DGSQIQEEARILEAKPGIMTPHSKRTGIIALKCGMTALWDKWGER 85

Query: 472  IPITVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLRE 651
            +PITVLWVDDNIVTQ KT++KE   ALQIG G KK KHLTKPEVGHFR+  VP+KRKLRE
Sbjct: 86   VPITVLWVDDNIVTQVKTVEKEGIFALQIGYGHKKAKHLTKPEVGHFRAHNVPLKRKLRE 145

Query: 652  FPVTEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHR 831
            FPVTEDAL+PVGT + VRHFVPGQ+VD+TGI++GKGFQGGMKR GF+GMPA+HGASLSHR
Sbjct: 146  FPVTEDALIPVGTSLGVRHFVPGQFVDITGITRGKGFQGGMKRHGFKGMPATHGASLSHR 205

Query: 832  SIGSTGQRDAPGRVFXXXXXXXXXXXXQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFV 1011
            S GSTGQRDAPG+VF            Q TVKNVWVYKIDP RN+MWVRGQVPGAEGNFV
Sbjct: 206  SGGSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPTRNMMWVRGQVPGAEGNFV 265

Query: 1012 FIKDAVYKKPDHSVLPFPTYLSAPDGETAELESLVADLGELDPFMAAD 1155
            FIKDAVYKKPD S LPFPTYL A D ET   E L+ADLGE+DPFM AD
Sbjct: 266  FIKDAVYKKPDISKLPFPTYLRAEDEETT--EPLIADLGEMDPFMVAD 311


>ref|NP_566579.1| 50S ribosomal protein L3-2 [Arabidopsis thaliana]
            gi|42559534|sp|Q9LRN8.1|RK3B_ARATH RecName: Full=50S
            ribosomal protein L3-2, chloroplastic; Flags: Precursor
            gi|11994685|dbj|BAB02923.1| 50S ribosomal protein L3
            [Arabidopsis thaliana] gi|332642436|gb|AEE75957.1| 50S
            ribosomal protein L3-2 [Arabidopsis thaliana]
          Length = 324

 Score =  409 bits (1052), Expect = e-112
 Identities = 208/289 (71%), Positives = 231/289 (79%), Gaps = 9/289 (3%)
 Frame = +1

Query: 316  RRFSSGESLILEDDHDGSNVI---------KSGIMTPKSKRTGVIAVKCGMTALWDKWGA 468
            RRFSS   L+   D  GS++I         K G M+ +SKRTG+IAVKCGMTALWDKWG 
Sbjct: 39   RRFSSDTGLM---DGGGSDIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGK 95

Query: 469  RIPITVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLR 648
            RIPI++LWVDDNIV+Q KT++KE   ALQIGCGQKK KHL+K  VGHFR+QGVP+KRKLR
Sbjct: 96   RIPISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLR 155

Query: 649  EFPVTEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSH 828
            EFPVTEDALLPVGT + VRHFVPGQYVDVTGI++GKGFQG MKR GF GMPASHGASLSH
Sbjct: 156  EFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSH 215

Query: 829  RSIGSTGQRDAPGRVFXXXXXXXXXXXXQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNF 1008
            RS GSTGQRDAPG+VF            Q TVKNVWVYKIDP RNLMWVRGQVPGAEGNF
Sbjct: 216  RSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNF 275

Query: 1009 VFIKDAVYKKPDHSVLPFPTYLSAPDGETAELESLVADLGELDPFMAAD 1155
            VFIKDA  KKPD S LPFPTYL+  D + +ELE LVADLGE+DPFM A+
Sbjct: 276  VFIKDAWCKKPDISKLPFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324