BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00000583
         (1529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   604   e-170
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   589   e-166
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              585   e-165
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      583   e-164
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   582   e-164

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  604 bits (1558), Expect = e-170
 Identities = 323/436 (74%), Positives = 369/436 (84%), Gaps = 4/436 (0%)
 Frame = -1

Query: 1526 QAIKALKENVNTYSA-ATADESLEKLDFMVEGNFDMESSLEALLLLQKSMLEKQWNLSFE 1350
            Q+IKALKE+V+T SA +TA    +  + M E + D++ S+EALLLLQKSMLEKQWNLSFE
Sbjct: 69   QSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLEKQWNLSFE 128

Query: 1349 QRRTLKEPKEGSCNNVEVTGSGVSARQRRS--MRKYVTNSD-AVPPTRRKPIVPIVSPDL 1179
            +  +   P   S   + VT SGVSARQRR    RK ++ S   V     K +   VSP+L
Sbjct: 129  RTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQLKSAVSPEL 188

Query: 1178 LGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPSEDQLATSL 999
            L NR++ YVKGV+SEELL+HAEVV LS+ IKAGLSLED+KS+LK+RLG DPS++Q+ATSL
Sbjct: 189  LQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPSDEQVATSL 248

Query: 998  RISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLIGLLRGIEK 819
            +IS AEL++K I CSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GLIGLLRGIEK
Sbjct: 249  KISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEK 308

Query: 818  FDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRLEEKGITPS 639
            FDSSKGF+ISTYVYWWIRQGVSRALVE SRTLRLP HLHERL LIRNAKIRLEEKG+TPS
Sbjct: 309  FDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRLEEKGVTPS 368

Query: 638  IARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHG 459
            I RIAESLN+S+KKVRNATEA SKVFSLDREAFPSLNGLPGET HSYIAD  LENNPWHG
Sbjct: 369  IDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHG 428

Query: 458  VDEWTLKNEVNNLIKTTLREREQDIVRLYYGLEKECLTWEDISRRIGLSRERVRQVGLVA 279
            VD+W LK+EVN LI  TL+EREQ+I+RLYYGL+ E LTWEDIS+RIGLSRERVRQVGLVA
Sbjct: 429  VDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRERVRQVGLVA 488

Query: 278  LEKLKHAARRKRLEAM 231
            LEKLKHAAR+K+LEAM
Sbjct: 489  LEKLKHAARKKKLEAM 504


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  589 bits (1518), Expect = e-166
 Identities = 323/437 (73%), Positives = 361/437 (82%), Gaps = 5/437 (1%)
 Frame = -1

Query: 1526 QAIKALKENVNTYSA-ATADESLEKLDFMVEGNFDMESSLEALLLLQKSMLEKQWNLSFE 1350
            Q++KALKE+V + SA +TAD  L      VE   D E  +EA LLLQKSMLEKQWNLSFE
Sbjct: 68   QSMKALKEHVESASAPSTADPDLSSSSSEVE---DEEYLVEAFLLLQKSMLEKQWNLSFE 124

Query: 1349 QRRTLKEP---KEGSCNNVEVTGSGVSARQRR-SMRKYVTNSDAVPPTRRKPIVPIVSPD 1182
            +    +E    K+      EVT SG SARQRR S RK V N  +    R    V      
Sbjct: 125  EEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSRVRAALGVE----- 179

Query: 1181 LLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPSEDQLATS 1002
               NR++ YVKGV+SEELLTHA+VV LS KIKAGL LED+KS+LK+R+G +P+++Q+A S
Sbjct: 180  ---NRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAAS 236

Query: 1001 LRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLIGLLRGIE 822
            LR+S AEL++KLIECSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GLIGLLRGIE
Sbjct: 237  LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 296

Query: 821  KFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRLEEKGITP 642
            KFDSSKGFKISTYVYWWIRQGVSRALVE SRTLRLP+HLHERLSLIRNAKIRLEEKGITP
Sbjct: 297  KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITP 356

Query: 641  SIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWH 462
            SI RIAE LNMS+KKVRNATEA SKVFSLDREAFPSLNGLPGETLHSYIAD RLENNPWH
Sbjct: 357  SIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWH 416

Query: 461  GVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLEKECLTWEDISRRIGLSRERVRQVGLV 282
            GVDEW LK+EVN LI TTL ERE+DI+RLYYGL+ ECLTWEDIS+RIGLSRERVRQVGLV
Sbjct: 417  GVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLV 476

Query: 281  ALEKLKHAARRKRLEAM 231
            ALEKLK+AAR+ R+EAM
Sbjct: 477  ALEKLKNAARKGRMEAM 493


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  585 bits (1509), Expect = e-165
 Identities = 321/434 (73%), Positives = 359/434 (82%), Gaps = 2/434 (0%)
 Frame = -1

Query: 1526 QAIKALKENVNTYSA-ATADESLEKLDFMVEGNFDMESSLEALLLLQKSMLEKQWNLSFE 1350
            Q++KALKE+V + SA +TAD  L      VE   D E  +EA LLLQKSMLEKQWNLSF+
Sbjct: 139  QSMKALKEHVESASAPSTADPDLSSSSSEVE---DEEYLVEAFLLLQKSMLEKQWNLSFK 195

Query: 1349 QRRTLKEPKEGSCNNVEVTGSGVSARQRR-SMRKYVTNSDAVPPTRRKPIVPIVSPDLLG 1173
             R+  +E          VT SG SARQRR S RK V N  +    R    V         
Sbjct: 196  ARQKRRE----------VTCSGTSARQRRISGRKRVMNEKSKSRVRAALGVE-------- 237

Query: 1172 NRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPSEDQLATSLRI 993
            NR++ YVKGV+SEELLTHA+VV LS KIKAGL LED+KS+LK+R+G +P+++Q+A SLR+
Sbjct: 238  NRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRM 297

Query: 992  SCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLIGLLRGIEKFD 813
            S AEL++KLIECSLAREKLAMSNVRLVMSIAQ+YDNMGAE+ADLVQ GLIGLLRGIEKFD
Sbjct: 298  SRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFD 357

Query: 812  SSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRLEEKGITPSIA 633
            SSKGFKISTYVYWWIRQGVSRALVE SRTLRLP+HLHERLSLIRNAKIRLEEKGITPSI 
Sbjct: 358  SSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSID 417

Query: 632  RIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWHGVD 453
            RIAE LNMS+KKVRNATEA SKVFSLDREAFPSLNGLPGETLHSYIAD RLENNPWHGVD
Sbjct: 418  RIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVD 477

Query: 452  EWTLKNEVNNLIKTTLREREQDIVRLYYGLEKECLTWEDISRRIGLSRERVRQVGLVALE 273
            EW LK+EVN LI TTL ERE+DI+RLYYGL+ ECLTWEDIS+RIGLSRERVRQVGLVALE
Sbjct: 478  EWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALE 537

Query: 272  KLKHAARRKRLEAM 231
            KLK+AAR+ R+EAM
Sbjct: 538  KLKNAARKGRMEAM 551


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  583 bits (1503), Expect = e-164
 Identities = 305/441 (69%), Positives = 361/441 (81%), Gaps = 8/441 (1%)
 Frame = -1

Query: 1529 AQAIKALKENVNTYSAATADES-----LEKLDFMVEGNFDMESSLEALLLLQKSMLEKQW 1365
            +Q+ K+LKE+V+     TAD S      E  + +   + D + S+E LLLLQKSMLEKQW
Sbjct: 68   SQSAKSLKEHVDI----TADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEKQW 123

Query: 1364 NLSFEQRRTLKEPKEGSCNNVEVTGSGVSARQRRS---MRKYVTNSDAVPPTRRKPIVPI 1194
            NLS EQ  T     E     + +T SG SAR+RR     R    +S A P +  KP+  I
Sbjct: 124  NLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPLRSI 183

Query: 1193 VSPDLLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPSEDQ 1014
            + P+LL NR++ YVKGV+SEELLTHAEV+ LSKKI+ GL LE+ KS+LK+RLG +PS+DQ
Sbjct: 184  IGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQ 243

Query: 1013 LATSLRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLIGLL 834
            LA SL++S  +L++ LIECSLARE+LAMSNVRLVMSIAQ+YDN+GAE+ADLVQ GLIGLL
Sbjct: 244  LAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLL 303

Query: 833  RGIEKFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRLEEK 654
            RGIEKFD SKG+KISTYVYWWIRQGVSRALVE SRTLRLPT+LHERLSLIRNAK RLEEK
Sbjct: 304  RGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLEEK 363

Query: 653  GITPSIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTRLEN 474
            GITPS+  IA SLNMS+KKVRNATEA+SK++SLDREAFPSLNGLPGETLHSYIAD  LEN
Sbjct: 364  GITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLEN 423

Query: 473  NPWHGVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLEKECLTWEDISRRIGLSRERVRQ 294
            NPWHGVD W LK+EVNNLI +TLR+RE++I+RLYYGL+ ECLTWEDIS+RIGLSRERVRQ
Sbjct: 424  NPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRERVRQ 483

Query: 293  VGLVALEKLKHAARRKRLEAM 231
            VGLVALEKLKHAAR+++L+AM
Sbjct: 484  VGLVALEKLKHAARKRQLDAM 504


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  582 bits (1501), Expect = e-164
 Identities = 309/437 (70%), Positives = 365/437 (83%), Gaps = 4/437 (0%)
 Frame = -1

Query: 1529 AQAIKALKENVNTYSAATADESLEK-LDFMVEGNFDMESSLEALLLLQKSMLEKQWNLSF 1353
            + +IKALKE+V+T SA++   +  K  D   E +  ++ S+EALLLLQKSMLEKQWNLSF
Sbjct: 69   SHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNLSF 128

Query: 1352 EQRRTLKEPKEGSCNNVEVTGSGVSARQRR--SMRKYVTNSDAVPPTRR-KPIVPIVSPD 1182
            E+  +     + +   + VT SGVSARQRR  + RK    S  +  +   K +  + SPD
Sbjct: 129  ERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFLRSVSSPD 188

Query: 1181 LLGNRVRTYVKGVLSEELLTHAEVVHLSKKIKAGLSLEDYKSKLKKRLGYDPSEDQLATS 1002
            LL NR++ YVKGV+S+E+L H EVV LS+ I+AGLS ED+KS+LK+RLG +PS++Q+A S
Sbjct: 189  LLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIADS 248

Query: 1001 LRISCAELRTKLIECSLAREKLAMSNVRLVMSIAQKYDNMGAELADLVQAGLIGLLRGIE 822
            LRIS A+L++KLI+CSLAREKLAMSNVRLVMSIAQKYDNMGAE+ADLVQ GLIGLLRGIE
Sbjct: 249  LRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRGIE 308

Query: 821  KFDSSKGFKISTYVYWWIRQGVSRALVEYSRTLRLPTHLHERLSLIRNAKIRLEEKGITP 642
            KFDSSKGFKISTYVYWWIRQGVSRALV+ SRTLRLP HLHERL LIRNAKIRLEEKG+TP
Sbjct: 309  KFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGVTP 368

Query: 641  SIARIAESLNMSEKKVRNATEATSKVFSLDREAFPSLNGLPGETLHSYIADTRLENNPWH 462
            SI RIAESLNMS++KVRNATEA SKVFSLDREAFPSLNGLPGET HSYIAD R ENNPWH
Sbjct: 369  SIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNPWH 428

Query: 461  GVDEWTLKNEVNNLIKTTLREREQDIVRLYYGLEKECLTWEDISRRIGLSRERVRQVGLV 282
            GVDEW LK EVN LI +TL+ERE++I+RLY+GL++ECLTWEDIS+R+GLSRERVRQVGLV
Sbjct: 429  GVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRERVRQVGLV 488

Query: 281  ALEKLKHAARRKRLEAM 231
            ALEKLKHAAR++  EAM
Sbjct: 489  ALEKLKHAARKRNTEAM 505