BLASTX nr result
ID: Cocculus23_contig00061446
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00061446
(238 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE87827.1| RNA polymerase beta' chain subunit-1, partial (ch... 45 4e-07
gb|AHI87518.1| RNA polymerase beta subunit (chloroplast) [Chiono... 42 5e-07
gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion o... 42 5e-07
ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281... 42 5e-07
gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia] 42 5e-07
gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis] 42 5e-07
gb|AGQ55750.1| RNA polymerase beta (chloroplast) [Lilium longifl... 41 6e-07
ref|YP_008758179.1| DNA-directed RNA polymerase beta' chain (chl... 42 6e-07
ref|NP_904222.1| RNA polymerase beta' subunit [Physcomitrella pa... 42 6e-07
ref|XP_002886863.1| hypothetical protein ARALYDRAFT_893971 [Arab... 40 1e-06
ref|YP_008994511.1| RNA polymerase beta (chloroplast) [Hypseocha... 42 1e-06
gb|AEX94482.1| RNA polymerase beta (chloroplast) [Haworthia cymb... 42 1e-06
gb|AFU96966.1| RpoC1, partial (chloroplast) [Linum usitatissimum] 42 1e-06
gb|AFU96949.1| RpoC1, partial (chloroplast) [Ctenolophon engleri... 42 1e-06
gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus] 42 1e-06
gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata] 42 1e-06
gb|ABB90034.1| RNA polymerase beta I chain [Solanum tuberosum] 42 1e-06
gb|AAZ03990.1| RNA polymerase beta' chain [Yucca schidigera] 42 1e-06
gb|AFV61805.1| RNA polymerase beta' subunit (chloroplast) [Origa... 42 1e-06
ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [... 42 1e-06
>gb|ADE87827.1| RNA polymerase beta' chain subunit-1, partial (chloroplast)
[Chloraea virescens]
Length = 555
Score = 45.4 bits (106), Expect(2) = 4e-07
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LPCY
Sbjct: 74 MGYIKLACPVTHVWYLKRLPCY 95
Score = 34.3 bits (77), Expect(2) = 4e-07
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 73 HIMNLLGKPLKELEVLVYCD 132
+I NLL KPL+ELE LVYCD
Sbjct: 95 YIANLLDKPLRELEGLVYCD 114
>gb|AHI87518.1| RNA polymerase beta subunit (chloroplast) [Chionographis japonica]
Length = 692
Score = 41.6 bits (96), Expect(2) = 5e-07
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 104 MGYIKLACPVTHVWYLKRLPSY 125
Score = 37.7 bits (86), Expect(2) = 5e-07
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL*FYR 159
++I NLL KPLKELE LVYCD+ L F R
Sbjct: 124 SYIANLLDKPLKELEGLVYCDVYLDFSFAR 153
>gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion osense]
Length = 686
Score = 41.6 bits (96), Expect(2) = 5e-07
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 104 MGYIKLACPVTHVWYLKRLPSY 125
Score = 37.7 bits (86), Expect(2) = 5e-07
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL*FYR 159
++I NLL KPLKELE LVYCD+ L F R
Sbjct: 124 SYIANLLDKPLKELEGLVYCDVYLDFSFAR 153
>ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281371763|gb|ADA63690.1|
RNA polymerase beta [Typha latifolia]
Length = 686
Score = 41.6 bits (96), Expect(2) = 5e-07
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 104 MGYIKLACPVTHVWYLKRLPSY 125
Score = 37.7 bits (86), Expect(2) = 5e-07
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL*FYR 159
++I NLL KPLKELE LVYCD+ L F R
Sbjct: 124 SYIANLLDKPLKELEGLVYCDVYLDFSFAR 153
>gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]
Length = 684
Score = 41.6 bits (96), Expect(2) = 5e-07
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 104 MGYIKLACPVTHVWYLKRLPSY 125
Score = 37.7 bits (86), Expect(2) = 5e-07
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL*FYR 159
++I NLL KPLKELE LVYCD+ L F R
Sbjct: 124 SYIANLLDKPLKELEGLVYCDVYLDFSFAR 153
>gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis]
Length = 683
Score = 41.6 bits (96), Expect(2) = 5e-07
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 104 MGYIKLACPVTHVWYLKRLPSY 125
Score = 37.7 bits (86), Expect(2) = 5e-07
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL*FYR 159
++I NLL KPLKELE LVYCD+ L F R
Sbjct: 124 SYIANLLDKPLKELEGLVYCDVYLDFSFAR 153
>gb|AGQ55750.1| RNA polymerase beta (chloroplast) [Lilium longiflorum]
Length = 688
Score = 40.8 bits (94), Expect(2) = 6e-07
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK +P Y
Sbjct: 104 MGYIKLACPVTHVWYLKRIPSY 125
Score = 38.1 bits (87), Expect(2) = 6e-07
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL*FYR 159
++I NLL KPLKELE LVYCD+ L F R
Sbjct: 124 SYIANLLDKPLKELEGLVYCDVYLNFSFAR 153
>ref|YP_008758179.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Veratrum
patulum] gi|549531708|gb|AGX28834.1| DNA-directed RNA
polymerase beta' chain (chloroplast) [Veratrum patulum]
Length = 687
Score = 41.6 bits (96), Expect(2) = 6e-07
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 104 MGYIKLACPVTHVWYLKRLPSY 125
Score = 37.4 bits (85), Expect(2) = 6e-07
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL*FYR 159
++I NLL KPLKELE LVYCD+ L F R
Sbjct: 124 SYIANLLDKPLKELEGLVYCDVYLYFSFAR 153
>ref|NP_904222.1| RNA polymerase beta' subunit [Physcomitrella patens]
gi|41017895|sp|P60288.1|RPOC1_PHYPA RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|34494805|dbj|BAC85072.1| RNA polymerase beta' subunit
(chloroplast) [Physcomitrella patens]
Length = 679
Score = 41.6 bits (96), Expect(2) = 6e-07
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 101 MGYIKLACPVTHVWYLKRLPSY 122
Score = 37.4 bits (85), Expect(2) = 6e-07
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 121 SYIANLLAKPLKELESLVYCDL 142
>ref|XP_002886863.1| hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp.
lyrata] gi|297332704|gb|EFH63122.1| hypothetical protein
ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata]
Length = 1763
Score = 40.0 bits (92), Expect(2) = 1e-06
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KL CPV H+WYLK LP Y
Sbjct: 1168 MGYIKLTCPVTHVWYLKRLPSY 1189
Score = 38.1 bits (87), Expect(2) = 1e-06
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM*LKL 147
++I NLL KPLKELE LVYCD +KL
Sbjct: 1188 SYIANLLDKPLKELEGLVYCDSNMKL 1213
>ref|YP_008994511.1| RNA polymerase beta (chloroplast) [Hypseocharis bilobata]
gi|540067588|gb|AGV02939.1| RNA polymerase beta
(chloroplast) [Hypseocharis bilobata]
Length = 687
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 111 MGYIKLACPVTHVWYLKRLPSY 132
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 131 SYIANLLDKPLKELEDLVYCDL 152
>gb|AEX94482.1| RNA polymerase beta (chloroplast) [Haworthia cymbiformis]
Length = 685
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 104 MGYIKLACPVTHVWYLKRLPSY 125
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCD 132
++I+NLL KPLKELE LVYCD
Sbjct: 124 SYIVNLLDKPLKELEGLVYCD 144
>gb|AFU96966.1| RpoC1, partial (chloroplast) [Linum usitatissimum]
Length = 731
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 107 MGYIKLACPVTHVWYLKRLPSY 128
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCD 132
++I NLL KPLKELE LVYCD
Sbjct: 127 SYIANLLDKPLKELESLVYCD 147
>gb|AFU96949.1| RpoC1, partial (chloroplast) [Ctenolophon englerianus]
Length = 731
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 107 MGYIKLACPVTHVWYLKRLPSY 128
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCD 132
++I NLL KPLKELE LVYCD
Sbjct: 127 SYIANLLDKPLKELESLVYCD 147
>gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus]
Length = 696
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 111 MGYIKLACPVTHVWYLKRLPSY 132
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 131 SYIANLLDKPLKELEGLVYCDV 152
>gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata]
Length = 695
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 111 MGYIKLACPVTHVWYLKRLPSY 132
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 131 SYIANLLDKPLKELEGLVYCDV 152
>gb|ABB90034.1| RNA polymerase beta I chain [Solanum tuberosum]
Length = 694
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 111 MGYIKLACPVTHVWYLKRLPSY 132
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 131 SYIANLLDKPLKELEGLVYCDI 152
>gb|AAZ03990.1| RNA polymerase beta' chain [Yucca schidigera]
Length = 693
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 111 MGYIKLACPVTHVWYLKRLPSY 132
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 131 SYIANLLDKPLKELEGLVYCDV 152
>gb|AFV61805.1| RNA polymerase beta' subunit (chloroplast) [Origanum vulgare subsp.
vulgare]
Length = 691
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 111 MGYIKLACPVTHVWYLKRLPSY 132
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 131 SYIANLLDKPLKELEGLVYCDV 152
>ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [Salvia miltiorrhiza]
gi|401879733|gb|AFQ30920.1| RNA polymerase beta' subunit
(chloroplast) [Salvia miltiorrhiza]
Length = 691
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 3 MVYMKLACPVNHLWYLKHLPCY 68
M Y+KLACPV H+WYLK LP Y
Sbjct: 111 MGYIKLACPVTHVWYLKRLPSY 132
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 70 THIMNLLGKPLKELEVLVYCDM 135
++I NLL KPLKELE LVYCD+
Sbjct: 131 SYIANLLDKPLKELEGLVYCDV 152