BLASTX nr result
ID: Cocculus23_contig00059703
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00059703
(485 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 67 3e-09
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 64 2e-08
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript... 64 2e-08
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 62 1e-07
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 61 2e-07
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 60 3e-07
gb|ABK28243.1| unknown [Arabidopsis thaliana] 60 3e-07
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 60 3e-07
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part... 60 4e-07
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 59 5e-07
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 59 9e-07
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A... 58 2e-06
ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcr... 58 2e-06
gb|ABW81026.1| reverse transcriptase [Arabidopsis lyrata subsp. ... 58 2e-06
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 58 2e-06
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A... 53 2e-06
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 57 2e-06
ref|XP_007220081.1| hypothetical protein PRUPE_ppa024663mg [Prun... 44 2e-06
ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcript... 57 3e-06
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript... 56 5e-06
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 67.0 bits (162), Expect = 3e-09
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = -3
Query: 213 VTRKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NAR 34
+TR + PW+ ++WF IP+H+F+ W++ L RL T DRLQ++ I D C LC
Sbjct: 418 LTRTVHVIAPWSSIVWFPLAIPRHAFLHWQVMLFRLPTKDRLQQWGITSDATCRLCDGED 477
Query: 33 ETIQNLLFGC 4
E+ Q+L FGC
Sbjct: 478 ESHQHLFFGC 487
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 64.3 bits (155), Expect = 2e-08
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = -3
Query: 186 PWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFG 7
PW K +WF+ H+PKH+FI W + RL T DRL+ + +++ C LC + E+ +L F
Sbjct: 150 PWYKAVWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFE 209
Query: 6 CP 1
CP
Sbjct: 210 CP 211
>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 323
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = -3
Query: 237 SNVKSAQEV---TRKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINL 67
SN+ SA + G+ PW K +WF+ IPKH+FI W +RL T DRL ++ +N+
Sbjct: 133 SNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNI 192
Query: 66 DPCCGLC*NARETIQNLLFGC 4
C LC ET +L F C
Sbjct: 193 PTVCVLCNVVDETHDHLFFQC 213
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 61.6 bits (148), Expect = 1e-07
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = -3
Query: 183 WTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFGC 4
W K +WF+ H+PK +FI W + RL T DRL+R+ ++ P C LC + E+ ++L F C
Sbjct: 986 WHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRC 1045
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/68 (39%), Positives = 36/68 (52%)
Frame = -3
Query: 207 RKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARET 28
R P PW + +WF+G PKH+F +W L RL T RL + + +D CGLC ET
Sbjct: 940 RPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPET 999
Query: 27 IQNLLFGC 4
+L C
Sbjct: 1000 RDHLFLSC 1007
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 60.1 bits (144), Expect = 3e-07
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = -3
Query: 186 PWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFG 7
PW K +WF+ H+PKH+FI W + RL T DRLQ + +++ C LC ++ +L F
Sbjct: 128 PWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFE 187
Query: 6 C 4
C
Sbjct: 188 C 188
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 60.1 bits (144), Expect = 3e-07
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = -3
Query: 186 PWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFG 7
PW K +WF+ H+PKH+FI W + RL T DRLQ + +++ C LC ++ +L F
Sbjct: 128 PWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFE 187
Query: 6 C 4
C
Sbjct: 188 C 188
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 60.1 bits (144), Expect = 3e-07
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = -3
Query: 186 PWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFG 7
PW K +WF+ H+PKH+FI W + RL T DRLQ + +++ C LC ++ +L F
Sbjct: 128 PWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFE 187
Query: 6 C 4
C
Sbjct: 188 C 188
>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
gi|482569649|gb|EOA33837.1| hypothetical protein
CARUB_v10021318mg, partial [Capsella rubella]
Length = 290
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = -3
Query: 210 TRKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARE 31
T G PW K +WF+ IPKH+FI W + RL T DRL+ + +N+ C LC ++ E
Sbjct: 104 THPAGPLVPWFKSVWFKERIPKHAFISWVVIRNRLTTRDRLRGWGMNVPSECLLCTSSAE 163
Query: 30 TIQNLLFGC 4
+ +L F C
Sbjct: 164 SRLHLFFEC 172
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 59.3 bits (142), Expect = 5e-07
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = -3
Query: 183 WTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFGC 4
W K +WF IPKH+F MW RL+T DR+ + + +D C LC A E+ +L F C
Sbjct: 305 WYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSC 364
Query: 3 P 1
P
Sbjct: 365 P 365
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = -3
Query: 183 WTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFGC 4
W +LI PK FI+W L RLATA+R+ R+ ++ P C +C N ETIQ+L F C
Sbjct: 960 WKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFNC 1019
>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 288
Score = 57.8 bits (138), Expect = 2e-06
Identities = 30/78 (38%), Positives = 40/78 (51%)
Frame = -3
Query: 234 NVKSAQEVTRKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCC 55
++ SA E R W+ L+W G+IPKHSF W RL T DRL R+ ++ C
Sbjct: 184 SIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSC 243
Query: 54 GLC*NARETIQNLLFGCP 1
LC E+ +L F CP
Sbjct: 244 ILCGRNYESRDHLFFPCP 261
>ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|98962153|gb|ABF59406.1| unknown protein [Arabidopsis
thaliana] gi|332004916|gb|AED92299.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 209
Score = 57.8 bits (138), Expect = 2e-06
Identities = 27/60 (45%), Positives = 35/60 (58%)
Frame = -3
Query: 183 WTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFGC 4
W K IWF+G IPKH+FI W RL T D+L + +++ C LC ET Q+L F C
Sbjct: 144 WHKAIWFKGRIPKHAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFFDC 203
>gb|ABW81026.1| reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 181
Score = 57.8 bits (138), Expect = 2e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = -3
Query: 183 WTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFGC 4
W + IWF PK++F W + R+AT DR+ ++ N+D C C ++RET ++ F C
Sbjct: 41 WYQDIWFSNASPKYAFFTWLVAKNRIATGDRMIKWNQNVDASCVFCKDSRETKDHMFFNC 100
Query: 3 P 1
P
Sbjct: 101 P 101
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/77 (36%), Positives = 38/77 (49%)
Frame = -3
Query: 234 NVKSAQEVTRKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCC 55
+ K TR G+ PW K +WF PK SF +W RL+T D++ + L C
Sbjct: 1265 STKETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKMLLWNRGLQGTC 1324
Query: 54 GLC*NARETIQNLLFGC 4
LC NA E+ +L F C
Sbjct: 1325 LLCRNATESRDHLFFSC 1341
>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 342
Score = 53.1 bits (126), Expect(2) = 2e-06
Identities = 28/75 (37%), Positives = 39/75 (52%)
Frame = -3
Query: 234 NVKSAQEVTRKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCC 55
++ SA E R W+ L+W G+IPKHSF W RL+T DRL R+ ++ C
Sbjct: 182 SITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLSTRDRLSRWDRSIPLSC 241
Query: 54 GLC*NARETIQNLLF 10
LC E+ +L F
Sbjct: 242 LLCGGNYESRNHLFF 256
Score = 24.3 bits (51), Expect(2) = 2e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 329 DLKIHLAALRAFPSNEEDRIIWPYNSRGEFSATSS 225
D+ + +R PS EDR +W SR FS TS+
Sbjct: 153 DIWDRVQGVRPSPS-VEDRWVWVPGSRDSFSITSA 186
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/61 (42%), Positives = 36/61 (59%)
Frame = -3
Query: 186 PWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFG 7
PW K++WF+ +IP+ S I W L RL T DRL+ + +N+ LC N ET +L F
Sbjct: 126 PWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFE 185
Query: 6 C 4
C
Sbjct: 186 C 186
>ref|XP_007220081.1| hypothetical protein PRUPE_ppa024663mg [Prunus persica]
gi|462416543|gb|EMJ21280.1| hypothetical protein
PRUPE_ppa024663mg [Prunus persica]
Length = 681
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 177 KLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFGCP 1
K IW +PK +W+ R ++T L + I DP C +C E+++++LF CP
Sbjct: 428 KTIWKVETLPKIKLFLWRALSRSISTRFALFKIKIATDPICPICEGFEESVEHILFLCP 486
Score = 33.1 bits (74), Expect(2) = 2e-06
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 290 SNEEDRIIWPYNSRGEFSATSSQHR 216
S+ DR++WP+NS G ++ S HR
Sbjct: 379 SSRPDRLVWPWNSSGSYTVKSGYHR 403
>ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana] gi|3184287|gb|AAC18934.1|
putative non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana] gi|330250497|gb|AEC05591.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis
thaliana]
Length = 211
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/60 (45%), Positives = 32/60 (53%)
Frame = -3
Query: 183 WTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCCGLC*NARETIQNLLFGC 4
W K IWF+G IPKH+FI W RL T DR+ + P C C ET Q+L F C
Sbjct: 43 WFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDC 102
>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 746
Score = 56.2 bits (134), Expect = 5e-06
Identities = 28/78 (35%), Positives = 36/78 (46%)
Frame = -3
Query: 234 NVKSAQEVTRKKGLPFPWTKLIWFEGHIPKHSFIMWKLCLRRLATADRLQRFTINLDPCC 55
N K TR+ L W K +WF PK+S + W RL T DR+ + D C
Sbjct: 267 NTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSC 326
Query: 54 GLC*NARETIQNLLFGCP 1
LC + ET +L F CP
Sbjct: 327 VLCHHLVETRDHLFFTCP 344