BLASTX nr result
ID: Cocculus23_contig00058665
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00058665
(292 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prf||1211235R rpoC-like ORF 151 179 4e-43
gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum] 178 6e-43
gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum] 178 6e-43
sp|P12116.1|RPOC1_TOBAC RecName: Full=DNA-directed RNA polymeras... 178 8e-43
gb|AHH30432.1| RNA polymerase beta (chloroplast) [Bartsia inaequ... 177 1e-42
ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum in... 177 1e-42
ref|YP_001294089.1| RNA polymerase beta [Chloranthus spicatus] g... 177 1e-42
ref|YP_007353906.1| RNA polymerase beta' subunit (chloroplast) [... 177 1e-42
gb|ABB90034.1| RNA polymerase beta I chain [Solanum tuberosum] 177 1e-42
sp|Q2VEI5.2|RPOC1_SOLTU RecName: Full=DNA-directed RNA polymeras... 177 1e-42
ref|YP_008963682.1| RNA polymerase beta (chloroplast) [Liquidamb... 177 2e-42
ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum... 177 2e-42
gb|AFK81464.1| RNA polymerase beta [Camellia taliensis] 177 2e-42
ref|YP_008963297.1| RNA polymerase beta [Camellia oleifera] gi|3... 177 2e-42
gb|AFK81290.1| RNA polymerase beta [Camellia sinensis var. assam... 177 2e-42
ref|YP_008593102.1| DNA-directed RNA polymerase beta' subunit (c... 177 2e-42
ref|YP_008520130.1| DNA-directed RNA polymerase beta' subunit (c... 177 2e-42
ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (c... 177 2e-42
ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (c... 177 2e-42
ref|YP_008592748.1| DNA-directed RNA polymerase beta' subunit (c... 177 2e-42
>prf||1211235R rpoC-like ORF 151
Length = 151
Score = 179 bits (454), Expect = 4e-43
Identities = 84/88 (95%), Positives = 85/88 (96%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
KNF P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 65 KNF-GPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 123
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 124 YLKRLPSYIANLLDKPLKELEGLVYCDV 151
>gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum]
Length = 682
Score = 178 bits (452), Expect = 6e-43
Identities = 82/90 (91%), Positives = 84/90 (93%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV*F 4
YLKRLPSYIANLLDKPLKELEGLVYCDV F
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDVSF 147
>gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum]
Length = 682
Score = 178 bits (452), Expect = 6e-43
Identities = 82/90 (91%), Positives = 84/90 (93%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV*F 4
YLKRLPSYIANLLDKPLKELEGLVYCDV F
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDVSF 147
>sp|P12116.1|RPOC1_TOBAC RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
Length = 680
Score = 178 bits (451), Expect = 8e-43
Identities = 84/90 (93%), Positives = 85/90 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
KNF P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 KNF-GPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 116
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV*F 4
YLKRLPSYIANLLDKPLKELEGLVYCD F
Sbjct: 117 YLKRLPSYIANLLDKPLKELEGLVYCDFSF 146
>gb|AHH30432.1| RNA polymerase beta (chloroplast) [Bartsia inaequalis]
Length = 679
Score = 177 bits (450), Expect = 1e-42
Identities = 81/88 (92%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum indicum]
gi|347448286|gb|AEO92697.1| RNA polymerase beta' subunit
(chloroplast) [Sesamum indicum]
Length = 691
Score = 177 bits (450), Expect = 1e-42
Identities = 81/88 (92%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 65 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 124
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 125 YLKRLPSYIANLLDKPLKELEGLVYCDV 152
>ref|YP_001294089.1| RNA polymerase beta [Chloranthus spicatus]
gi|212288280|sp|A6MMB3.1|RPOC1_CHLSC RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|146744179|gb|ABQ43251.1| RNA polymerase beta
[Chloranthus spicatus]
Length = 688
Score = 177 bits (450), Expect = 1e-42
Identities = 81/88 (92%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_007353906.1| RNA polymerase beta' subunit (chloroplast) [Tectona grandis]
gi|438687595|emb|CCP47121.1| RNA polymerase beta'
subunit (chloroplast) [Tectona grandis]
gi|438688279|emb|CCP47210.1| RNA polymerase beta'
subunit (chloroplast) [Tectona grandis]
gi|438688403|emb|CCP47299.1| RNA polymerase beta'
subunit (chloroplast) [Tectona grandis]
Length = 684
Score = 177 bits (449), Expect = 1e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACP+THVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPITHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDV 145
>gb|ABB90034.1| RNA polymerase beta I chain [Solanum tuberosum]
Length = 694
Score = 177 bits (449), Expect = 1e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 65 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 124
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCD+
Sbjct: 125 YLKRLPSYIANLLDKPLKELEGLVYCDI 152
>sp|Q2VEI5.2|RPOC1_SOLTU RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
Length = 687
Score = 177 bits (449), Expect = 1e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCD+
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDI 145
>ref|YP_008963682.1| RNA polymerase beta (chloroplast) [Liquidambar formosana]
gi|491650362|gb|AGL13422.1| RNA polymerase beta
(chloroplast) [Liquidambar formosana]
Length = 682
Score = 177 bits (448), Expect = 2e-42
Identities = 82/90 (91%), Positives = 83/90 (92%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV*F 4
YLKRLPSYIANLLDKPLKELEGLVYCD F
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDFSF 147
>ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum chinense]
gi|403226772|gb|AFR25651.1| RNA polymerase beta
(chloroplast) [Penthorum chinense]
Length = 686
Score = 177 bits (448), Expect = 2e-42
Identities = 81/88 (92%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEK+DPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKRLPSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRLPSYIANLLDKPLKELEGLVYCDV 145
>gb|AFK81464.1| RNA polymerase beta [Camellia taliensis]
Length = 683
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_008963297.1| RNA polymerase beta [Camellia oleifera] gi|388893286|gb|AFK81377.1|
RNA polymerase beta [Camellia oleifera]
Length = 683
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145
>gb|AFK81290.1| RNA polymerase beta [Camellia sinensis var. assamica]
Length = 683
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_008593102.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
yunnanensis] gi|537362855|gb|AGU44658.1| DNA-directed
RNA polymerase beta' subunit (chloroplast) [Camellia
yunnanensis]
Length = 686
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_008520130.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
taliensis] gi|537362675|gb|AGU44480.1| DNA-directed RNA
polymerase beta' subunit (chloroplast) [Camellia
taliensis] gi|537362945|gb|AGU44747.1| DNA-directed RNA
polymerase beta' subunit (chloroplast) [Camellia
taliensis]
Length = 686
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_008592924.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
impressinervis] gi|537362585|gb|AGU44391.1| DNA-directed
RNA polymerase beta' subunit (chloroplast) [Camellia
impressinervis]
Length = 686
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_008592837.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
danzaiensis] gi|552546184|ref|YP_008593013.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia pitardii] gi|537362497|gb|AGU44304.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia danzaiensis] gi|537362765|gb|AGU44569.1|
DNA-directed RNA polymerase beta' subunit (chloroplast)
[Camellia pitardii]
Length = 686
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_008592748.1| DNA-directed RNA polymerase beta' subunit (chloroplast) [Camellia
cuspidata] gi|537362407|gb|AGU44215.1| DNA-directed RNA
polymerase beta' subunit (chloroplast) [Camellia
cuspidata]
Length = 686
Score = 177 bits (448), Expect = 2e-42
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = -2
Query: 273 KNFLAP*KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVW 94
+ P KSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVW
Sbjct: 58 ERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVW 117
Query: 93 YLKRLPSYIANLLDKPLKELEGLVYCDV 10
YLKR+PSYIANLLDKPLKELEGLVYCDV
Sbjct: 118 YLKRIPSYIANLLDKPLKELEGLVYCDV 145