BLASTX nr result
ID: Cocculus23_contig00058419
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00058419
(280 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containi... 77 3e-12
emb|CBI36158.3| unnamed protein product [Vitis vinifera] 77 3e-12
ref|XP_002528197.1| pentatricopeptide repeat-containing protein,... 75 7e-12
gb|EYU21550.1| hypothetical protein MIMGU_mgv1a002764mg [Mimulus... 66 4e-09
ref|XP_002299640.2| hypothetical protein POPTR_0001s18030g [Popu... 64 2e-08
ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 64 2e-08
ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containi... 64 2e-08
ref|XP_002882971.1| pentatricopeptide repeat-containing protein ... 64 3e-08
ref|XP_006406889.1| hypothetical protein EUTSA_v10020273mg [Eutr... 62 6e-08
ref|XP_006478024.1| PREDICTED: pentatricopeptide repeat-containi... 62 8e-08
ref|XP_006441042.1| hypothetical protein CICLE_v10023415mg [Citr... 62 8e-08
ref|XP_007216985.1| hypothetical protein PRUPE_ppa002680mg [Prun... 60 2e-07
gb|AAO42273.1| unknown protein [Arabidopsis thaliana] 60 3e-07
ref|NP_188222.1| pentatricopeptide repeat-containing protein [Ar... 60 3e-07
ref|XP_004302914.1| PREDICTED: pentatricopeptide repeat-containi... 59 7e-07
ref|XP_006296607.1| hypothetical protein CARUB_v10013192mg [Caps... 59 9e-07
ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group] g... 57 3e-06
gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indi... 57 3e-06
gb|EPS62746.1| hypothetical protein M569_12042, partial [Genlise... 56 5e-06
ref|XP_007024106.1| Pentatricopeptide repeat (PPR-like) superfam... 56 5e-06
>ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 76.6 bits (187), Expect = 3e-12
Identities = 40/68 (58%), Positives = 49/68 (72%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
SI +R +ST PHL QRI QT+SEIVQMF+L + KD +N K R+N S+R LDER
Sbjct: 5 SIPLRRMISTLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRTLDER 64
Query: 26 FLRILKIF 3
F+RILKIF
Sbjct: 65 FIRILKIF 72
>emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 76.6 bits (187), Expect = 3e-12
Identities = 40/68 (58%), Positives = 49/68 (72%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
SI +R +ST PHL QRI QT+SEIVQMF+L + KD +N K R+N S+R LDER
Sbjct: 5 SIPLRRMISTLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRTLDER 64
Query: 26 FLRILKIF 3
F+RILKIF
Sbjct: 65 FIRILKIF 72
>ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532409|gb|EEF34204.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 642
Score = 75.5 bits (184), Expect = 7e-12
Identities = 38/71 (53%), Positives = 52/71 (73%)
Frame = -3
Query: 215 FKMSIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIREL 36
F SIV KR++ST+PHL++RI QTD+EIV MFR+ + + N +N K + + S R+L
Sbjct: 5 FVKSIVLKRSISTSPHLYERIKQTDNEIVNMFRVPSMNNKMQNLPMNRKFSGKDTSTRKL 64
Query: 35 DERFLRILKIF 3
DERF+RILKIF
Sbjct: 65 DERFIRILKIF 75
>gb|EYU21550.1| hypothetical protein MIMGU_mgv1a002764mg [Mimulus guttatus]
Length = 640
Score = 66.2 bits (160), Expect = 4e-09
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
SI R + T LF+RI QT++EIVQMF+L + KD PN N TR + S R+LDER
Sbjct: 5 SIASSRGIFTCSCLFERIKQTENEIVQMFKLASPKDDTPNFG-NHPSTRRSMSARKLDER 63
Query: 26 FLRILKIF 3
F+RILKIF
Sbjct: 64 FIRILKIF 71
>ref|XP_002299640.2| hypothetical protein POPTR_0001s18030g [Populus trichocarpa]
gi|550347580|gb|EEE84445.2| hypothetical protein
POPTR_0001s18030g [Populus trichocarpa]
Length = 641
Score = 64.3 bits (155), Expect = 2e-08
Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Frame = -3
Query: 203 IVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKD--IPPNTSINSKETRSNRSIRELDE 30
I KR++ST P L QRI QT+ EIV+MF++ + KD + + NSK +R + S+R LDE
Sbjct: 7 IASKRSISTFPFLSQRIKQTEKEIVEMFKVPSSKDDEMQNLPTQNSKFSRRDPSVRTLDE 66
Query: 29 RFLRILKIF 3
RF+RILKIF
Sbjct: 67 RFIRILKIF 75
>ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 64.3 bits (155), Expect = 2e-08
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
S+ KR++S+ L RI QT++EIVQMFR+ T N S N K R + S+R LDER
Sbjct: 5 SLASKRSISSLHPLSTRIKQTENEIVQMFRVSTPSPEASNFSFNRKVLRRDPSVRTLDER 64
Query: 26 FLRILKIF 3
F+RILKIF
Sbjct: 65 FIRILKIF 72
>ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 64.3 bits (155), Expect = 2e-08
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
S+ KR++S+ L RI QT++EIVQMFR+ T N S N K R + S+R LDER
Sbjct: 5 SLASKRSISSLHPLSTRIKQTENEIVQMFRVSTPSPEASNFSFNRKVLRRDPSVRTLDER 64
Query: 26 FLRILKIF 3
F+RILKIF
Sbjct: 65 FIRILKIF 72
>ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297328811|gb|EFH59230.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 642
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/74 (45%), Positives = 50/74 (67%)
Frame = -3
Query: 224 VFLFKMSIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSI 45
V++ SI+ KR++ST P+L QR QT++EIVQMF + H++ K +R + S+
Sbjct: 2 VYISARSILAKRSVSTLPYLSQRFKQTENEIVQMFSIPNHEE-SEKPQEKWKLSRKDPSV 60
Query: 44 RELDERFLRILKIF 3
R LDERF+RI+KIF
Sbjct: 61 RMLDERFIRIVKIF 74
>ref|XP_006406889.1| hypothetical protein EUTSA_v10020273mg [Eutrema salsugineum]
gi|557108035|gb|ESQ48342.1| hypothetical protein
EUTSA_v10020273mg [Eutrema salsugineum]
Length = 641
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/74 (48%), Positives = 47/74 (63%)
Frame = -3
Query: 224 VFLFKMSIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSI 45
VF+ SI KR +ST PHL QR QT++EIVQMF + ++ K +R + S+
Sbjct: 2 VFISARSIFVKRRVSTLPHLSQRFKQTENEIVQMFSIPNPEE-SEKPQEKWKLSRRDPSV 60
Query: 44 RELDERFLRILKIF 3
R LDERF+RILKIF
Sbjct: 61 RMLDERFIRILKIF 74
>ref|XP_006478024.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like isoform X1 [Citrus sinensis]
gi|568848458|ref|XP_006478025.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X2 [Citrus sinensis]
gi|568848460|ref|XP_006478026.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X3 [Citrus sinensis]
gi|568848462|ref|XP_006478027.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X4 [Citrus sinensis]
gi|568848464|ref|XP_006478028.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X5 [Citrus sinensis]
gi|568848466|ref|XP_006478029.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X6 [Citrus sinensis]
gi|568848468|ref|XP_006478030.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X7 [Citrus sinensis]
gi|568848470|ref|XP_006478031.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X8 [Citrus sinensis]
gi|568848472|ref|XP_006478032.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g16010-like isoform X9 [Citrus sinensis]
Length = 638
Score = 62.0 bits (149), Expect = 8e-08
Identities = 35/68 (51%), Positives = 44/68 (64%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
SI KR +ST L QRI QT++EIV MF+L D N ++ K R + S R+LDER
Sbjct: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARKLDER 65
Query: 26 FLRILKIF 3
F+RILKIF
Sbjct: 66 FIRILKIF 73
>ref|XP_006441042.1| hypothetical protein CICLE_v10023415mg [Citrus clementina]
gi|557543304|gb|ESR54282.1| hypothetical protein
CICLE_v10023415mg [Citrus clementina]
Length = 638
Score = 62.0 bits (149), Expect = 8e-08
Identities = 35/68 (51%), Positives = 44/68 (64%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
SI KR +ST L QRI QT++EIV MF+L D N ++ K R + S R+LDER
Sbjct: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARKLDER 65
Query: 26 FLRILKIF 3
F+RILKIF
Sbjct: 66 FIRILKIF 73
>ref|XP_007216985.1| hypothetical protein PRUPE_ppa002680mg [Prunus persica]
gi|462413135|gb|EMJ18184.1| hypothetical protein
PRUPE_ppa002680mg [Prunus persica]
Length = 645
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = -3
Query: 206 SIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDER 27
S KR++ST PHL +R+ QT++EIV+MFR N ++ +R + S+R LDER
Sbjct: 5 SFALKRSISTYPHLSERLNQTENEIVKMFRFPRASGEVQNFPMSRNMSRKDPSVRMLDER 64
Query: 26 FLRILKIF 3
F +ILKIF
Sbjct: 65 FTKILKIF 72
>gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -3
Query: 194 KRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDERFLRI 15
KR++S+ PHL QR QT++EIVQMF + H++ K +R + S+R LDERF+RI
Sbjct: 12 KRSISSLPHLSQRFKQTENEIVQMFSVPNHEE-SEKPQEKWKLSRKDPSVRMLDERFIRI 70
Query: 14 LKIF 3
+KIF
Sbjct: 71 VKIF 74
>ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g16010 gi|9294448|dbj|BAB02667.1| unnamed protein
product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -3
Query: 194 KRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDERFLRI 15
KR++S+ PHL QR QT++EIVQMF + H++ K +R + S+R LDERF+RI
Sbjct: 12 KRSISSLPHLSQRFKQTENEIVQMFSVPNHEE-SEKPQEKWKLSRKDPSVRMLDERFIRI 70
Query: 14 LKIF 3
+KIF
Sbjct: 71 VKIF 74
>ref|XP_004302914.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Fragaria vesca subsp. vesca]
Length = 651
Score = 58.9 bits (141), Expect = 7e-07
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = -3
Query: 218 LFKMSIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRE 39
L S R++ST+ HL QR+ QT++EIV MFRL D + ++ R + S+R
Sbjct: 4 LIAKSFATTRSISTSTHLSQRLNQTENEIVNMFRLPNASDQTHSFPMSRNMPRKDPSVRT 63
Query: 38 LDERFLRILKIF 3
LD+RF +ILKIF
Sbjct: 64 LDDRFTKILKIF 75
>ref|XP_006296607.1| hypothetical protein CARUB_v10013192mg [Capsella rubella]
gi|482565316|gb|EOA29505.1| hypothetical protein
CARUB_v10013192mg [Capsella rubella]
Length = 638
Score = 58.5 bits (140), Expect = 9e-07
Identities = 32/74 (43%), Positives = 48/74 (64%)
Frame = -3
Query: 224 VFLFKMSIVWKRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSI 45
+++ SI KR+++T PHL QR QT++EIVQMF + ++ K +R + S+
Sbjct: 2 LYISARSIFPKRSIATLPHLSQRFKQTENEIVQMFSVPNPEE-SEKPQEKWKLSRKDPSV 60
Query: 44 RELDERFLRILKIF 3
R LDERF+RI+KIF
Sbjct: 61 RMLDERFIRIVKIF 74
>ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa Japonica
Group] gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza
sativa Japonica Group] gi|125581581|gb|EAZ22512.1|
hypothetical protein OsJ_06176 [Oryza sativa Japonica
Group] gi|215704610|dbj|BAG94238.1| unnamed protein
product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 632
Score = 56.6 bits (135), Expect = 3e-06
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = -3
Query: 191 RALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDERFLRIL 12
R ++++PHL +R+ QT++EIVQMFR + ++ ++ + R S+R LDERF+RIL
Sbjct: 12 RGIASSPHLARRLKQTENEIVQMFRTPSPRN---EDAVAALSPRYTNSVRVLDERFIRIL 68
Query: 11 KIF 3
KIF
Sbjct: 69 KIF 71
>gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 56.6 bits (135), Expect = 3e-06
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = -3
Query: 191 RALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDERFLRIL 12
R ++++PHL +R+ QT++EIVQMFR + ++ ++ + R S+R LDERF+RIL
Sbjct: 12 RGIASSPHLARRLKQTENEIVQMFRTPSPRN---EDAVAALSPRYTNSVRVLDERFIRIL 68
Query: 11 KIF 3
KIF
Sbjct: 69 KIF 71
>gb|EPS62746.1| hypothetical protein M569_12042, partial [Genlisea aurea]
Length = 624
Score = 56.2 bits (134), Expect = 5e-06
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = -3
Query: 191 RALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDERFLRIL 12
R +T+P L +RI QT++EIVQMFR+ + + +++ N SIR LDERF+RIL
Sbjct: 1 RFFTTSPILLKRIKQTENEIVQMFRVGVPSE--EESPFSNRRKNGNASIRALDERFVRIL 58
Query: 11 KIF 3
KIF
Sbjct: 59 KIF 61
>ref|XP_007024106.1| Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1
[Theobroma cacao] gi|590618658|ref|XP_007024107.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao]
gi|590618661|ref|XP_007024108.1| Pentatricopeptide
repeat (PPR-like) superfamily protein isoform 1
[Theobroma cacao] gi|590618664|ref|XP_007024109.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao]
gi|590618669|ref|XP_007024110.1| Pentatricopeptide
repeat (PPR-like) superfamily protein isoform 1
[Theobroma cacao] gi|590618672|ref|XP_007024111.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao] gi|508779472|gb|EOY26728.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao] gi|508779473|gb|EOY26729.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao] gi|508779474|gb|EOY26730.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao] gi|508779475|gb|EOY26731.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao] gi|508779476|gb|EOY26732.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao] gi|508779477|gb|EOY26733.1|
Pentatricopeptide repeat (PPR-like) superfamily protein
isoform 1 [Theobroma cacao]
Length = 636
Score = 56.2 bits (134), Expect = 5e-06
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = -3
Query: 194 KRALSTTPHLFQRIMQTDSEIVQMFRLQTHKDIPPNTSINSKETRSNRSIRELDERFLRI 15
+R++ST HL + I QT++EIVQMF+L + K + ++ K+ S+R LDERF+RI
Sbjct: 11 RRSISTLSHLCEPIKQTENEIVQMFQLPSPKKEAQDLAVKRKKP----SVRTLDERFIRI 66
Query: 14 LKIF 3
LKIF
Sbjct: 67 LKIF 70