BLASTX nr result
ID: Cocculus23_contig00058328
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00058328
(522 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer ar... 76 6e-12
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar... 75 1e-11
ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Popu... 68 2e-09
ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus] 65 8e-09
gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus] 65 8e-09
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus] 65 8e-09
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru... 65 8e-09
ref|XP_006408598.1| hypothetical protein EUTSA_v10002258mg, part... 64 2e-08
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 64 2e-08
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 64 2e-08
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 64 2e-08
gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein... 64 3e-08
ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutr... 62 1e-07
>ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1170
Score = 75.9 bits (185), Expect = 6e-12
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRPFTS 160
SSFP+IL+F+NK PDPQ LRL+ WFSRY F +KHI G+ N++ D LSRP S
Sbjct: 1044 SSFPRILEFKNKMPPDPQTLRLKDWFSRYDFTVKHIKGNQNLIPDLLSRPMKS 1096
>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1951
Score = 74.7 bits (182), Expect = 1e-11
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
SSFP+IL+F+NK PDPQ LRL+ WFSRY F +KHI G+ N++ D LSRP
Sbjct: 1711 SSFPRILEFKNKMPPDPQTLRLKDWFSRYDFTVKHIKGNQNLIPDLLSRP 1760
>ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Populus trichocarpa]
gi|550349213|gb|EEE85243.2| hypothetical protein
POPTR_0001s38890g [Populus trichocarpa]
Length = 309
Score = 67.8 bits (164), Expect = 2e-09
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
SSFPK+LQF+ K LP PQLLRL WF +Y F ++HI G N++ D L+RP
Sbjct: 97 SSFPKMLQFKRKMLPHPQLLRLAEWFPKYTFTVEHIKGTKNLIPDMLTRP 146
>ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus]
Length = 124
Score = 65.5 bits (158), Expect = 8e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
SSFP+I F+NK L D QLL L+ WF++Y F ++HI G+ N++ DFL+RP
Sbjct: 73 SSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 122
>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1701
Score = 65.5 bits (158), Expect = 8e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
SSFP+I F+NK L D QLL L+ WF++Y F ++HI G+ N++ DFL+RP
Sbjct: 1599 SSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 1648
>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1799
Score = 65.5 bits (158), Expect = 8e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
SSFP+I F+NK L D QLL L+ WF++Y F ++HI G+ N++ DFL+RP
Sbjct: 1697 SSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 1746
>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
gi|565672276|gb|AHC13194.1| polyprotein [Citrus
endogenous pararetrovirus]
Length = 1812
Score = 65.5 bits (158), Expect = 8e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
SSFP+I F+NK L D QLL L+ WF++Y F ++HI G+ N++ DFL+RP
Sbjct: 1710 SSFPRIFDFKNKLLLDKQLLNLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 1759
>ref|XP_006408598.1| hypothetical protein EUTSA_v10002258mg, partial [Eutrema
salsugineum] gi|557109754|gb|ESQ50051.1| hypothetical
protein EUTSA_v10002258mg, partial [Eutrema salsugineum]
Length = 260
Score = 64.3 bits (155), Expect = 2e-08
Identities = 29/49 (59%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSR 148
SSFPK++QF+ K LP QLLR +WFS+++F +KHI G N L DFLSR
Sbjct: 62 SSFPKMIQFKQKILPQAQLLRWASWFSQWKFDVKHIKGKYNFLPDFLSR 110
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2
Query: 5 SFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
+FPK+++ K +P+ QLLR WFS YQF +KH+ G NILADFLSRP
Sbjct: 1758 AFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRP 1806
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2
Query: 5 SFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
+FPK+++ K +P+ QLLR WFS YQF +KH+ G NILADFLSRP
Sbjct: 1758 AFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRP 1806
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 63.9 bits (154), Expect = 2e-08
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2
Query: 5 SFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
+FPK+++ K +P+ QLLR WFS YQF +KH+ G NILADFLSRP
Sbjct: 1757 AFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGKDNILADFLSRP 1805
>gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein clearing virus]
Length = 758
Score = 63.5 bits (153), Expect = 3e-08
Identities = 27/50 (54%), Positives = 36/50 (72%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSRP 151
SSFP++L F+ K +P+ QLLR WFSR+ F +KHI G +N L D L+RP
Sbjct: 364 SSFPRMLHFKQKTIPNSQLLRWAXWFSRFDFQVKHIKGKNNTLPDMLTRP 413
>ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutrema salsugineum]
gi|557107078|gb|ESQ47393.1| hypothetical protein
EUTSA_v10028344mg [Eutrema salsugineum]
Length = 1508
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2
Query: 2 SSFPKILQFQNKQLPDPQLLRLQAWFSRYQFHIKHIPGHSNILADFLSR 148
SSFPK++QF+ K LP QLLR +WFS+++F +KH G N L DFLSR
Sbjct: 1164 SSFPKMIQFKQKILPQAQLLRWASWFSQWKFDVKHNIGKDNFLPDFLSR 1212