BLASTX nr result
ID: Cocculus23_contig00058109
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00058109
(268 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 130 2e-28
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 129 4e-28
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 128 7e-28
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 127 1e-27
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 127 2e-27
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 125 5e-27
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 125 5e-27
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 125 6e-27
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 125 8e-27
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 124 1e-26
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 123 2e-26
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 123 2e-26
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 123 3e-26
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 122 5e-26
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 122 5e-26
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera] 122 5e-26
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana] 121 9e-26
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 120 2e-25
emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera] 120 2e-25
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 120 2e-25
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 130 bits (327), Expect = 2e-28
Identities = 61/88 (69%), Positives = 72/88 (81%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW++I++P + +IG KW+FKRK GIP VE R+KARLV KG++QREGIDY EIFSPVVK
Sbjct: 854 TWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVK 913
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H SI LL+IV FDMELEQLDVKT FL
Sbjct: 914 HVSIRYLLSIVVQFDMELEQLDVKTAFL 941
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 129 bits (324), Expect = 4e-28
Identities = 58/88 (65%), Positives = 73/88 (82%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW+L+++P+N+ IIG +W+FK K GIP VE RFKARLV KGYTQREG+DY EIF+PVVK
Sbjct: 548 TWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREGVDYQEIFAPVVK 607
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H+SI L+++V DMELEQ+DVKT FL
Sbjct: 608 HTSIRVLMSVVVDQDMELEQMDVKTAFL 635
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 128 bits (322), Expect = 7e-28
Identities = 59/89 (66%), Positives = 74/89 (83%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
HTW +++RP +Q +IGS+W++K K GIP VE+ RFKARLV KGY QR+GIDY+EIF+PVV
Sbjct: 844 HTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVV 903
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KH SI L++IVA D+ELEQLDVKT FL
Sbjct: 904 KHVSIRILMSIVAQEDLELEQLDVKTAFL 932
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 127 bits (320), Expect = 1e-27
Identities = 59/88 (67%), Positives = 73/88 (82%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TWEL+ +P ++ ++GSKWVFKRK+G E R+KARLV KG++Q+EG+DYNEIFSPVVK
Sbjct: 802 TWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVK 861
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
HSSI LLA VAH D+EL+QLDVKT FL
Sbjct: 862 HSSIRLLLAFVAHEDLELDQLDVKTAFL 889
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 127 bits (319), Expect = 2e-27
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW LI P N+ +I KW+FKR EGIP+VE ++KARLV +G+TQREG+D+NEIFSPVVK
Sbjct: 845 TWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVK 904
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
HSSI LLA+VA D+ELEQ+DVKT FL
Sbjct: 905 HSSIRILLAMVALLDLELEQMDVKTAFL 932
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 125 bits (315), Expect = 5e-27
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW+L+++P ++ IIG +W+FK K GIP VE RFKARLV KGYTQREG+DY EIF+PVVK
Sbjct: 870 TWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVK 929
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H SI L+++V D+ELEQ+DVKTTFL
Sbjct: 930 HVSIRILMSLVVDKDLELEQMDVKTTFL 957
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 125 bits (315), Expect = 5e-27
Identities = 59/88 (67%), Positives = 71/88 (80%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW + RP Q IIGS+W++K K+GIP VE+ RFKARLV KGY QREG+DY+EIF+PVVK
Sbjct: 875 TWTTVTRPEKQRIIGSRWIYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVK 934
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H SI LL+IVA ++ELEQLDVKT FL
Sbjct: 935 HVSIRILLSIVAQENLELEQLDVKTAFL 962
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 125 bits (314), Expect = 6e-27
Identities = 57/89 (64%), Positives = 71/89 (79%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
HTW+L+ +P +IG +WVF RK GIP VE RF ARLV KG+TQ+EG+DYNEIFSPVV
Sbjct: 846 HTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVV 905
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KH SI LL++V H++MEL+Q+DVKT FL
Sbjct: 906 KHVSIRYLLSMVVHYNMELQQMDVKTAFL 934
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 125 bits (313), Expect = 8e-27
Identities = 59/89 (66%), Positives = 69/89 (77%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
HTW ++++P + +IG KW+FKRK G P +E RFKARLV KGY QREGIDY +IFSPVV
Sbjct: 767 HTWTVVKKPVGERVIGCKWIFKRKPGTPGIEQPRFKARLVSKGYAQREGIDYTDIFSPVV 826
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KH SI LLAIVA + ELEQLDVKT FL
Sbjct: 827 KHVSIRILLAIVAEENYELEQLDVKTAFL 855
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 124 bits (312), Expect = 1e-26
Identities = 60/89 (67%), Positives = 71/89 (79%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
+TW ++ RP NQ IIG +W+FK K GI VE+ RFKARLV KGY Q+EGIDY+EIF+PVV
Sbjct: 867 NTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVV 926
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KH SI LL+IVA D+ELEQLDVKT FL
Sbjct: 927 KHVSIRVLLSIVAQEDLELEQLDVKTAFL 955
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 123 bits (309), Expect = 2e-26
Identities = 55/88 (62%), Positives = 71/88 (80%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW L+++P ++ IIG +W+FK K GIP VE R+KARLV KGYTQREG+DY EIF+PV K
Sbjct: 777 TWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVAK 836
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H+SI L+++V D+ELEQ+DVKTTFL
Sbjct: 837 HTSIRILMSVVVDQDLELEQMDVKTTFL 864
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 123 bits (309), Expect = 2e-26
Identities = 56/89 (62%), Positives = 71/89 (79%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
HTW+LIE+P Q +IG KW+FK K GIP VE R+KARLV KG++Q+EGIDYNE+FS VV
Sbjct: 763 HTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYNEVFSLVV 822
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KH SI +L+++ + D ELEQ+DVKT FL
Sbjct: 823 KHVSIRLMLSLMVNMDYELEQMDVKTAFL 851
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 123 bits (308), Expect = 3e-26
Identities = 61/89 (68%), Positives = 69/89 (77%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
+TW L+ R Q IG KWVFKRK GI VE RFKARLVVKGY+Q+EGIDY EIFSPVV
Sbjct: 664 NTWVLVNRDQFQKPIGCKWVFKRKSGIVGVEKPRFKARLVVKGYSQKEGIDYQEIFSPVV 723
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KH SI LL++V H DMEL+Q+DVKT FL
Sbjct: 724 KHVSIRLLLSMVTHCDMELQQMDVKTAFL 752
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 122 bits (306), Expect = 5e-26
Identities = 55/89 (61%), Positives = 71/89 (79%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
HTW+LIE+P Q +IG KW+FK K GIP +E R+K RLV KG++Q+EGIDYNE+FS VV
Sbjct: 235 HTWDLIEKPEKQKLIGCKWIFKLKPGIPGLEKQRYKVRLVAKGFSQQEGIDYNEVFSLVV 294
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KH SI +L++V + D ELEQ+DVKT+FL
Sbjct: 295 KHVSIRLMLSLVVNMDYELEQMDVKTSFL 323
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 122 bits (306), Expect = 5e-26
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW+L+ +PS + II KWVFK+KEGI E ++KAR+V +G+ QREG+DYNEIFSPVV+
Sbjct: 822 TWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVR 881
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H+SI LLAIVAH ++ELEQLDVKT FL
Sbjct: 882 HTSIRVLLAIVAHQNLELEQLDVKTAFL 909
>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
Length = 595
Score = 122 bits (306), Expect = 5e-26
Identities = 54/88 (61%), Positives = 72/88 (81%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW+L+E P + IG KWV+K+KE I E +FKARLV KGY+QR+G+DY+EIFSP+V+
Sbjct: 192 TWDLVEPPEGKRAIGCKWVYKKKEAISKKEGEKFKARLVAKGYSQRKGVDYDEIFSPMVR 251
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H+SI +L +VAHFDM+LEQ+DV+TTFL
Sbjct: 252 HTSIRTVLGLVAHFDMQLEQMDVETTFL 279
>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
Length = 494
Score = 121 bits (304), Expect = 9e-26
Identities = 54/88 (61%), Positives = 70/88 (79%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW L+++P ++ IIG +W+FK K GIP VE R+KARLV KGYTQREG+DY EIF+PV K
Sbjct: 102 TWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVAK 161
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H+SI L+++V D+ELEQ+DVKT FL
Sbjct: 162 HTSIRILMSVVVDQDLELEQMDVKTAFL 189
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 120 bits (302), Expect = 2e-25
Identities = 54/88 (61%), Positives = 70/88 (79%)
Frame = +1
Query: 4 TWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVK 183
TW L+++P ++ IIG +W+FK K GIP VE R+KARLV KGYTQREG+DY EIF+PVVK
Sbjct: 101 TWVLVDKPQDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVVK 160
Query: 184 HSSICALLAIVAHFDMELEQLDVKTTFL 267
H+ I L+++V D+ELEQ+DVKT FL
Sbjct: 161 HTFIRILMSVVVDQDLELEQMDVKTAFL 188
>emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera]
Length = 444
Score = 120 bits (302), Expect = 2e-25
Identities = 55/85 (64%), Positives = 71/85 (83%)
Frame = +1
Query: 13 LIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVVKHSS 192
L+++P ++G KWVFK+K GIP VE RFKARLV KGYTQREG+D+NEIFSP VKH+S
Sbjct: 225 LVDKPKGCKVVGCKWVFKKKLGIPGVEPERFKARLVAKGYTQREGVDFNEIFSPAVKHTS 284
Query: 193 ICALLAIVAHFDMELEQLDVKTTFL 267
I LLA+V+ +++E+EQ+DVKTTFL
Sbjct: 285 IGVLLALVSLWNLEIEQMDVKTTFL 309
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 120 bits (301), Expect = 2e-25
Identities = 56/89 (62%), Positives = 71/89 (79%)
Frame = +1
Query: 1 HTWELIERPSNQMIIGSKWVFKRKEGIPNVEDARFKARLVVKGYTQREGIDYNEIFSPVV 180
HTWEL++ P + I KW+FKRKEGI + ++AR+KARL+ KGY+Q GID+N++FSPVV
Sbjct: 1053 HTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVV 1112
Query: 181 KHSSICALLAIVAHFDMELEQLDVKTTFL 267
KHSSI LL+IVA D ELEQ+DVKT FL
Sbjct: 1113 KHSSIRTLLSIVAMHDYELEQMDVKTAFL 1141