BLASTX nr result
ID: Cocculus23_contig00057740
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00057740
(722 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun... 74 4e-22
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun... 75 2e-21
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera] 71 7e-21
emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera] 71 7e-21
ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203... 71 1e-20
ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prun... 75 1e-20
emb|CAN80487.1| hypothetical protein VITISV_043198 [Vitis vinifera] 69 2e-20
ref|XP_004309164.1| PREDICTED: uncharacterized protein LOC101300... 68 2e-20
emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera] 70 2e-20
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 72 2e-19
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 72 2e-19
ref|XP_004161321.1| PREDICTED: uncharacterized protein LOC101223... 72 2e-19
ref|XP_007216161.1| hypothetical protein PRUPE_ppa015308mg, part... 75 6e-19
emb|CAN68662.1| hypothetical protein VITISV_004407 [Vitis vinifera] 72 7e-19
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 70 7e-19
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 72 1e-18
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 66 1e-18
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 67 1e-18
emb|CAN68706.1| hypothetical protein VITISV_001642 [Vitis vinifera] 70 3e-18
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 70 5e-18
>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
gi|462405925|gb|EMJ11389.1| hypothetical protein
PRUPE_ppa017790mg [Prunus persica]
Length = 1485
Score = 73.6 bits (179), Expect(3) = 4e-22
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K FK KD LF+ LVM F LSN STF+RLMNQVL+PFIG F ++YFDD++
Sbjct: 726 IRPGDEWKTAFKSKDGLFEWLVMPFGLSNTPSTFMRLMNQVLRPFIGSFVVVYFDDIL 783
Score = 51.2 bits (121), Expect(3) = 4e-22
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPAL-VPKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L I+ LSP VP L VPK+ +W + S +NKIT+ I L+DML++LS
Sbjct: 649 LLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAINKITVKYRFPIPRLEDMLDVLSG 708
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
S + K DL S YHQI+I G
Sbjct: 709 SKVFSKIDLRSGYHQIRIRPG 729
Score = 26.6 bits (57), Expect(3) = 4e-22
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 243 NSLFINLNRCHYFLPKILFL 184
N LF+NL +C + K+LFL
Sbjct: 806 NKLFVNLKKCTFCTNKLLFL 825
>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
gi|462402874|gb|EMJ08431.1| hypothetical protein
PRUPE_ppa026856mg [Prunus persica]
Length = 1493
Score = 75.1 bits (183), Expect(3) = 2e-21
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K FK KD LF+ LVM F LSNA STF+RLMNQVL+PFIG F ++YFDD++
Sbjct: 734 IRPGDEWKTAFKSKDGLFEWLVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDIL 791
Score = 48.5 bits (114), Expect(3) = 2e-21
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPAL-VPKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L I+ LSP VP L VPK+ +W + S VNKI + +I L+D+L++LS
Sbjct: 657 LLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAVNKIKVKYRFSIPRLEDILDVLSG 716
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
S + K DL S YHQI+I G
Sbjct: 717 SKVFSKIDLRSGYHQIRIRPG 737
Score = 25.4 bits (54), Expect(3) = 2e-21
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 243 NSLFINLNRCHYFLPKILFL 184
N L++NL +C + K+LFL
Sbjct: 814 NKLYVNLKKCTFCTNKLLFL 833
>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
Length = 1521
Score = 70.9 bits (172), Expect(2) = 7e-21
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K +FK KD L++ LVM F L+NA STF+R+M QVL+PFIG+F ++YFDD++
Sbjct: 723 IRPGDEWKTSFKTKDGLYEWLVMPFGLTNAPSTFMRIMTQVLKPFIGRFVVVYFDDIL 780
Score = 56.6 bits (135), Expect(2) = 7e-21
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPALV-PKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L I+ LSP VPAL+ PK+ GSW + S +NKITI I LDDML+M+
Sbjct: 646 LLTKGFIRESLSPCGVPALLTPKKDGSWRMCVDSRAINKITIKYRFPIPRLDDMLDMMVG 705
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
S+I K DL S YHQI+I G
Sbjct: 706 SVIFSKIDLRSGYHQIRIRPG 726
>emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
Length = 1392
Score = 70.9 bits (172), Expect(2) = 7e-21
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K +FK KD L++ LVM F L+NA STF+R+M QVL+PFIG+F ++YFDD++
Sbjct: 682 IRPGDEWKTSFKTKDGLYEWLVMPFGLTNAPSTFMRIMTQVLKPFIGRFVVVYFDDIL 739
Score = 56.6 bits (135), Expect(2) = 7e-21
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPALV-PKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L I+ LSP VPAL+ PK+ GSW + S +NKITI I LDDML+M+
Sbjct: 605 LLTKGFIRESLSPCGVPALLTPKKDGSWRMCVDSRAINKITIKYRFPIPRLDDMLDMMVG 664
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
S+I K DL S YHQI+I G
Sbjct: 665 SVIFSKIDLRSGYHQIRIRPG 685
>ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203557 [Cucumis sativus]
Length = 1406
Score = 70.9 bits (172), Expect(3) = 1e-20
Identities = 31/58 (53%), Positives = 45/58 (77%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K FK + LF+ LVM F LSNA STF+RLMNQ+LQPF+ +F ++YFDD++
Sbjct: 368 IKPGDEWKTAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQILQPFLNQFIVVYFDDIL 425
Score = 54.7 bits (130), Expect(3) = 1e-20
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Frame = -1
Query: 674 IQPDLSPSIVPALV-PKRVGSWHVYWWSL-VNKITI---IAIIHLDDMLNMLSSSMILPK 510
IQP LSP VPAL+ PK+ G+W + S +NKITI I L D+L+ L + I K
Sbjct: 297 IQPSLSPCAVPALLAPKKDGNWRLCVDSRSINKITIKYRFPIPRLSDLLDQLGKASIFSK 356
Query: 509 NDLDSDYHQIKI*SG 465
DL S YHQI+I G
Sbjct: 357 VDLKSGYHQIRIKPG 371
Score = 20.8 bits (42), Expect(3) = 1e-20
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 243 NSLFINLNRCHYFLPKILFL 184
N L INL +C + I FL
Sbjct: 448 NELQINLKKCEFLCYSIHFL 467
>ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
gi|462417202|gb|EMJ21939.1| hypothetical protein
PRUPE_ppa023598mg [Prunus persica]
Length = 1457
Score = 75.1 bits (183), Expect(2) = 1e-20
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K FK KD LF+ LVM F LSNA STF+RLMNQVL+PFIG F ++YFDD++
Sbjct: 716 IRPGDEWKTAFKSKDGLFEWLVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDIL 773
Score = 51.2 bits (121), Expect(2) = 1e-20
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPAL-VPKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L I+ LSP VP L VPK+ +W + S +NKIT+ I L+DML++LS
Sbjct: 639 LLQKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAINKITVKSRFPIPRLEDMLDVLSG 698
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
S + K DL S YHQI+I G
Sbjct: 699 SRVFSKIDLRSGYHQIRIRPG 719
>emb|CAN80487.1| hypothetical protein VITISV_043198 [Vitis vinifera]
Length = 1499
Score = 69.3 bits (168), Expect(2) = 2e-20
Identities = 32/58 (55%), Positives = 45/58 (77%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ SG++ K +FK KD L++ LVM F L+NA STF+R M QVL+PFIG F ++YFDD++
Sbjct: 656 IRSGDEWKTSFKTKDGLYEWLVMPFGLTNAPSTFMRSMTQVLKPFIGWFVVVYFDDIL 713
Score = 56.6 bits (135), Expect(2) = 2e-20
Identities = 40/81 (49%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPALV-PKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L I+ LSP VPAL+ PK+ GSW + S +NKITI I LDDML+M+
Sbjct: 579 LLTKGFIRESLSPCGVPALLTPKKDGSWRMCVDSRAINKITIKYRFPIPRLDDMLDMMVG 638
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
S+I K DL S YHQI I SG
Sbjct: 639 SVIFSKIDLRSGYHQICIRSG 659
>ref|XP_004309164.1| PREDICTED: uncharacterized protein LOC101300012 [Fragaria vesca
subsp. vesca]
Length = 1034
Score = 68.2 bits (165), Expect(3) = 2e-20
Identities = 31/58 (53%), Positives = 45/58 (77%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K FK KD L++ LVM F LSNA STF+R+MNQVL+P+IG ++YFDD++
Sbjct: 763 IKLGDEWKTAFKSKDGLYEWLVMPFGLSNAPSTFMRVMNQVLKPYIGTCVVVYFDDIL 820
Score = 50.4 bits (119), Expect(3) = 2e-20
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Frame = -1
Query: 674 IQPDLSPSIVPAL-VPKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSSSMILPK 510
I+ +SP VP L VPK+ SW + S +NKITI I L+DML++L S++ K
Sbjct: 692 IRESMSPCAVPVLLVPKKDRSWRMCVDSRAINKITIKYRFPIPQLEDMLDVLGGSVVFSK 751
Query: 509 NDLDSDYHQIKI 474
DL S YHQI+I
Sbjct: 752 IDLRSGYHQIRI 763
Score = 26.9 bits (58), Expect(3) = 2e-20
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 243 NSLFINLNRCHYFLPKILFL 184
N L++NL +C + K+LFL
Sbjct: 843 NKLYVNLKKCSFMTKKLLFL 862
>emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera]
Length = 1292
Score = 70.5 bits (171), Expect(2) = 2e-20
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K +FK KD L++ LVM F L+NA STF+R+M QVL+PFIG+F ++YFDD++
Sbjct: 641 IRPGDEWKTSFKTKDGLYEWLVMLFGLTNAPSTFMRIMTQVLKPFIGRFVVVYFDDIL 698
Score = 55.1 bits (131), Expect(2) = 2e-20
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPALV-PKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L I+ LSP VPAL+ PK+ GSW + S +NKITI I LDDML+M+
Sbjct: 564 LLTKGFIRESLSPYGVPALLTPKKDGSWRMCVDSRAMNKITIKYRFPIPRLDDMLDMMVR 623
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
S+I K DL S YHQI+I G
Sbjct: 624 SVIFSKIDLRSGYHQIRIRPG 644
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 72.0 bits (175), Expect(2) = 2e-19
Identities = 33/58 (56%), Positives = 47/58 (81%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K TFK K L++ LVM F L+NA STF+RLMN+VL+PFIGKF ++YFDD++
Sbjct: 1160 MKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDIL 1217
Score = 50.4 bits (119), Expect(2) = 2e-19
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Frame = -1
Query: 674 IQPDLSPSIVPA-LVPKRVGSWHVYW-WSLVNKITII---AIIHLDDMLNMLSSSMILPK 510
++ LSP VP LVPK+ GSW + +N ITI I LDDML+ LS S++ K
Sbjct: 1089 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 1148
Query: 509 NDLDSDYHQIKI 474
DL S YHQI++
Sbjct: 1149 VDLRSGYHQIRM 1160
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 72.0 bits (175), Expect(2) = 2e-19
Identities = 33/58 (56%), Positives = 47/58 (81%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K TFK K L++ LVM F L+NA STF+RLMN+VL+PFIGKF ++YFDD++
Sbjct: 1151 MKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDIL 1208
Score = 50.4 bits (119), Expect(2) = 2e-19
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Frame = -1
Query: 674 IQPDLSPSIVPA-LVPKRVGSWHVYW-WSLVNKITII---AIIHLDDMLNMLSSSMILPK 510
++ LSP VP LVPK+ GSW + +N ITI I LDDML+ LS S++ K
Sbjct: 1080 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 1139
Query: 509 NDLDSDYHQIKI 474
DL S YHQI++
Sbjct: 1140 VDLRSGYHQIRM 1151
>ref|XP_004161321.1| PREDICTED: uncharacterized protein LOC101223713 [Cucumis sativus]
Length = 645
Score = 72.4 bits (176), Expect(2) = 2e-19
Identities = 34/66 (51%), Positives = 49/66 (74%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI*N 290
+ G++ K TFK K+ LF+ +VM F LSNA +TF+RLMNQ+L PF+ KF ++YFDD++
Sbjct: 571 IRPGDEWKTTFKTKEGLFEWMVMPFGLSNAPNTFMRLMNQILHPFLNKFIVVYFDDIL-- 628
Query: 289 KVMTTN 272
V +TN
Sbjct: 629 -VYSTN 633
Score = 50.1 bits (118), Expect(2) = 2e-19
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Frame = -1
Query: 674 IQPDLSPSIVPALVP-KRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSSSMILPK 510
I+P LSP VPAL+ K+ GSW + S +N+IT+ +I + D+L+ L + I K
Sbjct: 500 IKPSLSPCAVPALLTLKKDGSWRMCVDSRAINRITVKYRFSIPRISDLLDQLGKASIFSK 559
Query: 509 NDLDSDYHQIKI*SG 465
DL S YHQI+I G
Sbjct: 560 IDLKSGYHQIRIRPG 574
>ref|XP_007216161.1| hypothetical protein PRUPE_ppa015308mg, partial [Prunus persica]
gi|462412311|gb|EMJ17360.1| hypothetical protein
PRUPE_ppa015308mg, partial [Prunus persica]
Length = 1150
Score = 74.7 bits (182), Expect(2) = 6e-19
Identities = 45/104 (43%), Positives = 65/104 (62%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI*N 290
+ G++ K FK KD LF+ LVM F LSNA STF+RLMNQVL+PFIG F ++YFDD++
Sbjct: 590 IRPGDEWKTAFKSKDVLFECLVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDIL-- 647
Query: 289 KVMTTN*HIFGMFYKK*LIYQLKQVSLFPSKDSFLVIGFQKMVF 158
I+ +K L++ L+QV L +++ L + +K F
Sbjct: 648 --------IYSTIKEKHLVH-LRQV-LDVLRENKLYVNLKKCTF 681
Score = 46.2 bits (108), Expect(2) = 6e-19
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPAL-VPKRVGSWHVYWWSLVNKITIIAIIHLDDMLNMLSSSMIL 516
L I+ LSP VP L VPK+ +W ++ I L+DML++LS S +
Sbjct: 528 LLQKGFIRESLSPCAVPVLLVPKKDKTWRMF-----------PIPRLEDMLDVLSGSRVF 576
Query: 515 PKNDLDSDYHQIKI*SG 465
K DL S YHQI+I G
Sbjct: 577 SKIDLRSGYHQIRIRPG 593
>emb|CAN68662.1| hypothetical protein VITISV_004407 [Vitis vinifera]
Length = 605
Score = 72.0 bits (175), Expect(3) = 7e-19
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = -2
Query: 460 GEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
G++ K FK KD L++ LVM F LSNA STF+RLMNQVL FIGKF ++YFDD++
Sbjct: 292 GDEWKTNFKTKDGLYEWLVMPFGLSNAPSTFMRLMNQVLHSFIGKFVVVYFDDIL 346
Score = 44.3 bits (103), Expect(3) = 7e-19
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = -1
Query: 677 LIQPDLSPSIVPALV-PKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSSSMILP 513
LI +SP +V AL+ PK+ GSW + + +NKIT+ I L+D L+ L +
Sbjct: 217 LICESMSPCVVLALLTPKKDGSWRMCVDNHAINKITVKYRFPIPRLNDTLDRLEGHEVFT 276
Query: 512 KNDLDSDYHQIKI 474
K DL SDYHQI I
Sbjct: 277 KLDLRSDYHQICI 289
Score = 24.3 bits (51), Expect(3) = 7e-19
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 243 NSLFINLNRCHYFLPKILFL 184
N L+INL +C + LFL
Sbjct: 369 NKLYINLKKCSFMTSHFLFL 388
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 70.1 bits (170), Expect(2) = 7e-19
Identities = 32/58 (55%), Positives = 46/58 (79%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K FK K L++ LVM F L+NA STF+RLMN+VL+PFIGKF ++YFDD++
Sbjct: 818 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDIL 875
Score = 50.4 bits (119), Expect(2) = 7e-19
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Frame = -1
Query: 674 IQPDLSPSIVPA-LVPKRVGSWHVYW-WSLVNKITII---AIIHLDDMLNMLSSSMILPK 510
++ LSP VP LVPK+ GSW + +N ITI I LDDML+ LS S++ K
Sbjct: 747 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 806
Query: 509 NDLDSDYHQIKI 474
DL S YHQI++
Sbjct: 807 VDLRSGYHQIRM 818
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 72.0 bits (175), Expect(2) = 1e-18
Identities = 33/58 (56%), Positives = 47/58 (81%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K TFK K L++ LVM F L+NA STF+RLMN+VL+PFIGKF ++YFDD++
Sbjct: 912 MKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDIL 969
Score = 47.8 bits (112), Expect(2) = 1e-18
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Frame = -1
Query: 674 IQPDLSPSIVPA-LVPKRVGSWHVYW-WSLVNKITII---AIIHLDDMLNMLSSSMILPK 510
++ LSP VP LVPK+ GSW + +N TI I LDDML+ LS S++ K
Sbjct: 841 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNNTIRYRHPIPRLDDMLDELSGSIVFSK 900
Query: 509 NDLDSDYHQIKI 474
DL S YHQI++
Sbjct: 901 VDLRSGYHQIRM 912
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 65.9 bits (159), Expect(2) = 1e-18
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K FK K L++ LVM F LSNA STF+RLM +VL+P +GKF ++YFDD++
Sbjct: 716 IREGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDIL 773
Score = 53.9 bits (128), Expect(2) = 1e-18
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPAL-VPKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L A ++ LSP VPAL VPK+ G+W + S +N IT+ I LDDML+ LS
Sbjct: 639 LMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRAINNITVKYRFPIPRLDDMLDELSG 698
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
+ I K DL YHQ++I G
Sbjct: 699 ASIFSKIDLRQGYHQVRIREG 719
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 67.4 bits (163), Expect(2) = 1e-18
Identities = 29/58 (50%), Positives = 45/58 (77%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K FK K L++ LVM F LSNA STF+RLM +VL+P++G+F ++YFDD++
Sbjct: 704 IKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPYLGRFVVVYFDDIL 761
Score = 52.4 bits (124), Expect(2) = 1e-18
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = -1
Query: 692 LAAHSLIQPDLSPSIVPAL-VPKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSS 528
L + ++ LSP VPAL VPK+ GSW + S +N ITI I LDD+L+ LS
Sbjct: 627 LVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNITIKYRFPIPRLDDILDELSG 686
Query: 527 SMILPKNDLDSDYHQIKI*SG 465
+ + K DL YHQ++I G
Sbjct: 687 AQLFSKIDLRQGYHQVRIKEG 707
>emb|CAN68706.1| hypothetical protein VITISV_001642 [Vitis vinifera]
Length = 1082
Score = 69.7 bits (169), Expect(2) = 3e-18
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
+ G++ K +FK KD L++ LVM F L+NA STF+R+M QVL+PFIG+F ++YFDD++
Sbjct: 552 IRPGDEWKTSFKTKDGLYEWLVMPFGLTNAPSTFMRVMMQVLKPFIGRFVVVYFDDIL 609
Score = 48.9 bits (115), Expect(2) = 3e-18
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = -1
Query: 635 VPKRVGSWHVYWWS-LVNKITI---IAIIHLDDMLNMLSSSMILPKNDLDSDYHQIKI*S 468
VPK+ GSW + S +NKITI I LDDML+M+ S+I K DL S YHQI+I
Sbjct: 495 VPKKDGSWRMCVDSRAINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRP 554
Query: 467 G 465
G
Sbjct: 555 G 555
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 70.1 bits (170), Expect(2) = 5e-18
Identities = 32/58 (55%), Positives = 46/58 (79%)
Frame = -2
Query: 469 LESGEKGKITFKRKDDLFD*LVMSFTLSNAHSTFIRLMNQVLQPFIGKFFMIYFDDLI 296
++ G++ K FK K L++ LVM F L+NA STF+RLMN+VL+PFIGKF ++YFDD++
Sbjct: 797 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDIL 854
Score = 47.8 bits (112), Expect(2) = 5e-18
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = -1
Query: 674 IQPDLSPSIVPA-LVPKRVGSWHVYW-WSLVNKITII---AIIHLDDMLNMLSSSMILPK 510
++ LSP VP LVPK+ GSW + +N ITI I LDDML+ LS S++ K
Sbjct: 726 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSK 785
Query: 509 NDLDSDYHQI 480
+L S YHQI
Sbjct: 786 VELRSGYHQI 795