BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00055038
         (362 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50976.1| T4.15 [Malus x robusta]                                65   1e-08
gb|AAT40504.2| Polyprotein, putative [Solanum demissum]                65   1e-08
gb|ABB00038.1| reverse transcriptase family member [Glycine max]       65   1e-08
ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596...    63   5e-08
ref|WP_008409321.1| hypothetical protein [Bacillus isronensis] g...    62   8e-08
gb|AEJ72569.1| putative reverse transcriptase family member [Mal...    62   8e-08
ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis] g...    61   1e-07
ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840...    61   1e-07
gb|AAT38756.2| Putative methyltransferase family protein [Solanu...    60   4e-07
gb|AAT40500.1| Putative reverse transcriptase, identical [Solanu...    60   4e-07
ref|XP_003571941.1| PREDICTED: RNA-directed DNA polymerase from ...    59   5e-07
gb|EMS59381.1| Phospholipid-transporting ATPase 2 [Triticum urartu]    58   1e-06
gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis]      56   5e-06
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus...    56   6e-06
gb|EMS62958.1| Putative SWI/SNF-related matrix-associated actin-...    56   6e-06
emb|CBL94165.1| putative reverse transcriptase family member [Ma...    56   6e-06
gb|EMS60091.1| Retinoblastoma-related protein 1 [Triticum urartu]      55   8e-06
gb|EMS50104.1| Retrovirus-related Pol polyprotein LINE-1 [Tritic...    55   8e-06

>emb|CCH50976.1| T4.15 [Malus x robusta]
          Length = 986

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 38/98 (38%), Positives = 52/98 (53%)
 Frame = -1

Query: 362  RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
            RMLRW+C    KDK   E I+   G+  I  +MREN+L+WF HV RR  DAP R+ +  T
Sbjct: 877  RMLRWMCGHTRKDKIRNEDIRGKVGVAEIQGKMRENQLRWFGHVQRRPTDAPIRRCDYGT 936

Query: 182  ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAE 69
                       R T  E L+KD+   ++T  +  D A+
Sbjct: 937  EVQGRRGRGRPRKTLEETLRKDLEYLDLTKDMTQDRAQ 974


>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
          Length = 868

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 32/98 (32%), Positives = 53/98 (54%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C     DK   E I++  G+  +  ++RE RL+WF HV RR  DAP R+ E++ 
Sbjct: 585 RMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAPVRRCEVMV 644

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAE 69
           + G        +    E++++D+   ++T  +  D  E
Sbjct: 645 VEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKE 682


>gb|ABB00038.1| reverse transcriptase family member [Glycine max]
          Length = 377

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 32/83 (38%), Positives = 49/83 (59%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C K  +DK   E I++  G+ PI  +M ENRL+WF HV RR +D+  R+ + + 
Sbjct: 269 RMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRLRWFGHVERRPVDSVLRRVDQME 328

Query: 182 ISGNVXXXXXXRVTPIEILKKDM 114
               +      + T  E++KKD+
Sbjct: 329 RRQTIRGRGRPKKTIREVIKKDL 351


>ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
          Length = 278

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 31/89 (34%), Positives = 49/89 (55%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C     DK   E I++  G+  +  ++RE RL+WF HV RR  DAP R+ E L 
Sbjct: 172 RMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVRRRCADAPVRRCEGLV 231

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVT 96
           + G        +    E++++D+   ++T
Sbjct: 232 VEGTRRGRGRPKKYWGEVIRQDLAQLHIT 260


>ref|WP_008409321.1| hypothetical protein [Bacillus isronensis]
           gi|405383715|gb|EKB43273.1| hypothetical protein
           B857_03969 [Bacillus isronensis B3W22]
          Length = 109

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 37/97 (38%), Positives = 50/97 (51%)
 Frame = -1

Query: 359 MLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLTI 180
           MLRW+C    KDK   E I+   G+  I  +MRENRL+WF HV R   DAP R+ +  T 
Sbjct: 1   MLRWMCGHTRKDKIRNEDIRGKVGVAEIEGKMRENRLRWFGHVQRMPTDAPIRRCDYGTE 60

Query: 179 SGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAE 69
                     R T  E L+KD+   ++T  +  D A+
Sbjct: 61  VQGRRGRGRPRKTLEETLRKDLEYLDLTEDMTQDRAQ 97


>gb|AEJ72569.1| putative reverse transcriptase family member [Malus domestica]
          Length = 212

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 38/98 (38%), Positives = 50/98 (51%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C    KDK   E I+   G+  I   MRENRL+WF HV RR   AP R+ +  T
Sbjct: 103 RMLRWMCGHTRKDKIRNEDIRGKVGVAEIEGNMRENRLRWFGHVQRRPTYAPIRRCDYET 162

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAE 69
                      R T  E L+KD+   ++T  +  D A+
Sbjct: 163 EVQGRRGRGRPRKTLEETLRKDLGYLDLTKDMTQDRAQ 200


>ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis]
           gi|405551390|gb|EKB47241.1| hypothetical protein
           B879_04163 [Cecembia lonarensis LW9]
          Length = 133

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 38/98 (38%), Positives = 51/98 (52%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLR +C    KDK   E I+   G+  I  +MRENRL+WF HV RR  DAP R+ +  T
Sbjct: 24  RMLRGMCGHTRKDKIRNEDIQGKVGVAEIEGKMRENRLRWFGHVQRRPTDAPVRRCDYGT 83

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAE 69
                      R T  E L+KD+   ++T  +  D A+
Sbjct: 84  EVRGRRGRGRPRKTLEETLRKDLEYLDLTEDMTQDRAQ 121


>ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840703 [Brachypodium
           distachyon]
          Length = 567

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 30/101 (29%), Positives = 53/101 (52%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C    +D+   + I+   G+ PI+ ++ ++RL+WF H+ RR +DAP     L  
Sbjct: 460 RMLRWMCGHTRRDRVRNDDIRDRVGVAPIAEKLVQHRLRWFGHIQRRPLDAPVHSGRLKR 519

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAEEKV 60
                       +T  E +K+D+  +N+T  +  + A  K+
Sbjct: 520 AGNVKRGRGRPNLTWEESVKRDLKGWNITKELAMNRAAWKL 560


>gb|AAT38756.2| Putative methyltransferase family protein [Solanum demissum]
          Length = 828

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 30/97 (30%), Positives = 51/97 (52%)
 Frame = -1

Query: 359 MLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLTI 180
           MLRW+C     DK   E I++  G+  +  ++RE RL+WF HV RR  DA  R+ E++ +
Sbjct: 3   MLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAAVRRCEVMVV 62

Query: 179 SGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAE 69
            G        +    E++++D+   ++T  +  D  E
Sbjct: 63  EGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKE 99


>gb|AAT40500.1| Putative reverse transcriptase, identical [Solanum demissum]
          Length = 213

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C     DK   E I++  G+  +  ++RE RL+WF HV RR  DAP R+ E++ 
Sbjct: 117 RMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAPVRRCEVMV 176

Query: 182 ISGNVXXXXXXRVTPIEIL-KKDMLAFNVTIYVV 84
           +  ++      +V  +  L +  ++ F+  + VV
Sbjct: 177 VEASLPPRGSGKVCVLFTLPRPHLVGFHWVVVVV 210


>ref|XP_003571941.1| PREDICTED: RNA-directed DNA polymerase from mobile element
           jockey-like [Brachypodium distachyon]
          Length = 307

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/89 (31%), Positives = 47/89 (52%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C    +D    + I+   G+ PI+ ++ ++RL+WF H+ RR +DAP     L  
Sbjct: 200 RMLRWMCGHTRRDHVRNDDIRDRVGVAPIAEKLVQHRLRWFGHIQRRPLDAPVHSGRLKR 259

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVT 96
                       +T  E +K+D+  +N+T
Sbjct: 260 AGNVKRGRGRPNLTWEESVKRDLKGWNIT 288


>gb|EMS59381.1| Phospholipid-transporting ATPase 2 [Triticum urartu]
          Length = 1134

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 29/95 (30%), Positives = 49/95 (51%)
 Frame = -1

Query: 362  RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
            RMLRW+C  + KD+   + I+   G+ PI  ++ ++RL+WF H+ RR  +AP     L  
Sbjct: 719  RMLRWMCGHVRKDRVRNDDIRDRVGVAPIEEKLVQHRLRWFGHIQRRPPEAPVNSGRLKR 778

Query: 182  ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSD 78
                        +T  E +K+DM  +++T  +  D
Sbjct: 779  AENVKRGRGRPNLTWEESVKRDMKDWSITKELAMD 813


>gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis]
          Length = 1413

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 31/79 (39%), Positives = 43/79 (54%)
 Frame = -1

Query: 362  RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
            RMLRW+  +   D+   E I+   G+ PI  ++RE RL+WF HV RR ++AP R  E + 
Sbjct: 990  RMLRWMSGQTRMDRIKNEVIRSKVGVAPIEDKVREGRLRWFGHVQRRPLEAPVRAWEDIL 1049

Query: 182  ISGNVXXXXXXRVTPIEIL 126
            I          R+T  EIL
Sbjct: 1050 IPNTRRGRGRLRITWTEIL 1068


>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 30/96 (31%), Positives = 51/96 (53%)
 Frame = -1

Query: 350  WICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLTISGN 171
            W+      D+   E I+   G+ PI  ++RE RL+W+ HV RR ++AP R  E + I   
Sbjct: 1213 WMSGHTRMDRIRNEVIRSKVGVAPIEDKVREGRLRWYGHVQRRPLEAPVRAWEDILIPNT 1272

Query: 170  VXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAEEK 63
                   R+T  E+++KD+L   +   ++S+ A E+
Sbjct: 1273 RRGRGRPRITWTEVVRKDILDLGLQESLISNRAVEE 1308


>gb|EMS62958.1| Putative SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 3-like 1
           [Triticum urartu]
          Length = 1028

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/100 (29%), Positives = 49/100 (49%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLRW+C    KD+   + I+   G+ PI  ++ ++RL+WF H+ RR  +AP     L  
Sbjct: 660 RMLRWMCGHTRKDRVRNDDIRDRVGVAPIEEKLVQHRLRWFGHIQRRPPEAPVHSGRLKR 719

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAEEK 63
                       +T  E +K+D+  +++T  +  D    K
Sbjct: 720 AENVKRGRGRPNLTWEESVKRDLKDWSITKELAMDRDVSK 759


>emb|CBL94165.1| putative reverse transcriptase family member [Malus domestica]
          Length = 163

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 35/98 (35%), Positives = 49/98 (50%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           RMLR +C    KDK   E I+   G+  +  +MRENRL+WF HV R   DAP R+    T
Sbjct: 55  RMLRGMCRHTRKDKIVNEDIRGKVGVAEVEGKMRENRLRWFGHVQRMPTDAPVRRCNYET 114

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAE 69
                      R T  E L+KD+   ++T  +  + A+
Sbjct: 115 EVRGRRGRGRPRKTLEETLRKDLEYLDLTEDMTQNRAQ 152


>gb|EMS60091.1| Retinoblastoma-related protein 1 [Triticum urartu]
          Length = 747

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 27/101 (26%), Positives = 51/101 (50%)
 Frame = -1

Query: 362 RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
           R+LRW+C    KD+   + I+   G+ PI+ ++  +RL+WF H+ RR ++AP     L  
Sbjct: 226 RVLRWMCGHTRKDRVRNDDIRDRVGVAPIAEKLCPHRLRWFGHIQRRPLEAPGHSGRLKH 285

Query: 182 ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSDEAEEKV 60
                       +T  E + +D+  +++T  +  D  ++ V
Sbjct: 286 AENVKRGRGRPNLTWEEAVNRDLKDWSITKELAMDRVKQTV 326


>gb|EMS50104.1| Retrovirus-related Pol polyprotein LINE-1 [Triticum urartu]
          Length = 3154

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 28/95 (29%), Positives = 48/95 (50%)
 Frame = -1

Query: 362  RMLRWICDKILKDKNSIEQIKKMAGLCPISVRMRENRLKWFRHVHRRLIDAPERKSELLT 183
            RMLRW+C    KD+   + I+   G+ PI  ++ ++RL+WF H+ RR  +AP     L  
Sbjct: 2374 RMLRWMCGHTRKDRVRNDDIRDRVGVAPIEEKLVQHRLRWFGHIQRRPPEAPVHSGRLKR 2433

Query: 182  ISGNVXXXXXXRVTPIEILKKDMLAFNVTIYVVSD 78
                        +T  E +K+D+  +++T  +  D
Sbjct: 2434 AENVKRGRGRPNLTWEESVKRDLKDWSITKELAMD 2468